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Merge branch 'patch/JAL-2663_filterAACons' into develop
author
Jim Procter
<jprocter@issues.jalview.org>
Mon, 14 Aug 2017 09:34:44 +0000
(10:34 +0100)
committer
Jim Procter
<jprocter@issues.jalview.org>
Mon, 14 Aug 2017 09:34:44 +0000
(10:34 +0100)
src/jalview/gui/Jalview2XML.java
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diff --git
a/src/jalview/gui/Jalview2XML.java
b/src/jalview/gui/Jalview2XML.java
index
d472ef8
..
ffbe6a1
100644
(file)
--- a/
src/jalview/gui/Jalview2XML.java
+++ b/
src/jalview/gui/Jalview2XML.java
@@
-4489,8
+4489,8
@@
public class Jalview2XML
}
af.viewport.setGlobalColourScheme(cs);
- af.viewport.getResidueShading().setThreshold(
- view.getPidThreshold(), true);
+ af.viewport.getResidueShading().setThreshold(view.getPidThreshold(),
+ view.getIgnoreGapsinConsensus());
af.viewport.getResidueShading().setConsensus(
af.viewport.getSequenceConsensusHash());
af.viewport.setColourAppliesToAllGroups(false);