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JAL-2049 set sequence feature group to "Jalview" for computed protein
authorgmungoc <g.m.carstairs@dundee.ac.uk>
Wed, 18 May 2016 12:18:09 +0000 (13:18 +0100)
committergmungoc <g.m.carstairs@dundee.ac.uk>
Wed, 18 May 2016 12:18:09 +0000 (13:18 +0100)
variants

src/jalview/analysis/AlignmentUtils.java patch | blob | history

diff --git a/src/jalview/analysis/AlignmentUtils.java b/src/jalview/analysis/AlignmentUtils.java
index 92753b9..fba023f 100644 (file)
--- a/src/jalview/analysis/AlignmentUtils.java
+++ b/src/jalview/analysis/AlignmentUtils.java
@@ -1936,7 +1936,7 @@ public class AlignmentUtils
       // set score to 0f so 'graduated colour' option is offered! JAL-2060
       SequenceFeature sf = new SequenceFeature(
               SequenceOntologyI.SEQUENCE_VARIANT, desc, peptidePos,
-              peptidePos, 0f, null);
+              peptidePos, 0f, "Jalview");
       StringBuilder attributes = new StringBuilder(32);
       String id = (String) var.variant.getValue(ID);
       if (id != null)