JAL-1705 add concrete ENSEMBL sequence fetchers
authorJim Procter <jprocter@issues.jalview.org>
Sun, 28 Jun 2015 16:18:59 +0000 (17:18 +0100)
committerJim Procter <jprocter@issues.jalview.org>
Sun, 28 Jun 2015 16:18:59 +0000 (17:18 +0100)
src/jalview/ws/SequenceFetcher.java

index 8776747..656fa1d 100644 (file)
@@ -55,6 +55,12 @@ public class SequenceFetcher extends ASequenceFetcher
 
   public SequenceFetcher(boolean addDas)
   {
+    addDBRefSourceImpl(jalview.ext.ensembl.EnsemblProtein.class);
+    addDBRefSourceImpl(jalview.ext.ensembl.EnsemblTranscript.class);
+    addDBRefSourceImpl(jalview.ext.ensembl.EnsemblCds.class);
+    addDBRefSourceImpl(jalview.ext.ensembl.EnsemblGenome.class);
+    addDBRefSourceImpl(jalview.ext.ensembl.EnsemblCdna.class);
+
     addDBRefSourceImpl(jalview.ws.dbsources.EmblSource.class);
     addDBRefSourceImpl(jalview.ws.dbsources.EmblCdsSouce.class);
     addDBRefSourceImpl(jalview.ws.dbsources.Uniprot.class);