JAL-1397 propagate any consensus/conservation colourscheme state changes to the backg...
authorJim Procter <jprocter@compbio.dundee.ac.uk>
Thu, 17 Oct 2013 10:09:24 +0000 (11:09 +0100)
committerJim Procter <jprocter@compbio.dundee.ac.uk>
Thu, 17 Oct 2013 10:09:24 +0000 (11:09 +0100)
src/jalview/schemes/AnnotationColourGradient.java

index 17af427..9c5512c 100755 (executable)
@@ -17,6 +17,7 @@
  */
 package jalview.schemes;
 
+import jalview.analysis.Conservation;
 import jalview.datamodel.AlignmentAnnotation;
 import jalview.datamodel.AnnotatedCollectionI;
 import jalview.datamodel.GraphLine;
@@ -24,6 +25,7 @@ import jalview.datamodel.SequenceCollectionI;
 import jalview.datamodel.SequenceI;
 
 import java.awt.Color;
+import java.util.Hashtable;
 import java.util.IdentityHashMap;
 import java.util.Map;
 
@@ -289,4 +291,28 @@ public class AnnotationColourGradient extends ResidueColourScheme
   {
     seqAssociated = sassoc;
   }
+  @Override
+  public void setConsensus(Hashtable[] consensus)
+  {
+    if (colourScheme!=null)
+    {
+      colourScheme.setConsensus(consensus);
+    }
+  }
+  @Override
+  public void setConservation(Conservation cons)
+  {
+    if (colourScheme!=null)
+    {
+      colourScheme.setConservation(cons);
+    }
+  }
+  @Override
+  public void setConservationInc(int i)
+  {
+    if (colourScheme!=null)
+    {
+      colourScheme.setConservationInc(i);
+    }
+  }
 }