bug fix for wierdness retrieving QUERY sequence index.

diff --git a/src/jalview/io/JPredFile.java b/src/jalview/io/JPredFile.java
index ac181ec..08f7d17 100755 (executable)
--- a/src/jalview/io/JPredFile.java
+++ b/src/jalview/io/JPredFile.java
@@ -18,7 +18,7 @@ public class JPredFile
   Vector conf;
   Hashtable Scores; // Hash of names and score vectors
   Hashtable Symscores; // indexes of symbol annotation properties in sequenceI vector
-  private int QuerySeqPosition = -1;
+  private int QuerySeqPosition;
   public void setQuerySeqPosition(int QuerySeqPosition)
   {
     this.QuerySeqPosition = QuerySeqPosition;
@@ -47,7 +47,6 @@ public class JPredFile
     Scores = new Hashtable();
     ids = null;
     conf = null;
-    QuerySeqPosition = -1;
   }
 
   public JPredFile(String inFile, String type)