JAL-3026 MCview -> mc_view

SwingJS requires standard package and class capitalization;
_ added to avoid PC capitalization issue

diff --git a/src/MCview/.cvsignore b/src/mc_view/.cvsignore
similarity index 100%
rename from src/MCview/.cvsignore
rename to src/mc_view/.cvsignore

diff --git a/src/MCview/AppletPDBCanvas.java b/src/mc_view/AppletPDBCanvas.java
similarity index 99%
rename from src/MCview/AppletPDBCanvas.java
rename to src/mc_view/AppletPDBCanvas.java
index b15c3cc..fe1aca1 100644 (file)
--- a/src/MCview/AppletPDBCanvas.java
+++ b/src/mc_view/AppletPDBCanvas.java
@@ -18,7 +18,7 @@
  * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
  * The Jalview Authors are detailed in the 'AUTHORS' file.
  */
-package MCview;
+package mc_view;
 
 import jalview.analysis.AlignSeq;
 import jalview.appletgui.AlignmentPanel;

diff --git a/src/MCview/AppletPDBViewer.java b/src/mc_view/AppletPDBViewer.java
similarity index 99%
rename from src/MCview/AppletPDBViewer.java
rename to src/mc_view/AppletPDBViewer.java
index adf833f..fa30021 100644 (file)
--- a/src/MCview/AppletPDBViewer.java
+++ b/src/mc_view/AppletPDBViewer.java
@@ -18,7 +18,7 @@
  * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
  * The Jalview Authors are detailed in the 'AUTHORS' file.
  */
-package MCview;
+package mc_view;
 
 import jalview.appletgui.AlignmentPanel;
 import jalview.appletgui.EmbmenuFrame;

diff --git a/src/MCview/Atom.java b/src/mc_view/Atom.java
similarity index 99%
rename from src/MCview/Atom.java
rename to src/mc_view/Atom.java
index 904e307..3b4f409 100755 (executable)
--- a/src/MCview/Atom.java
+++ b/src/mc_view/Atom.java
@@ -18,7 +18,7 @@
  * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
  * The Jalview Authors are detailed in the 'AUTHORS' file.
  */
-package MCview;
+package mc_view;
 
 import jalview.schemes.ResidueProperties;
 

diff --git a/src/MCview/Bond.java b/src/mc_view/Bond.java
similarity index 99%
rename from src/MCview/Bond.java
rename to src/mc_view/Bond.java
index 371ccd5..e609506 100755 (executable)
--- a/src/MCview/Bond.java
+++ b/src/mc_view/Bond.java
@@ -18,7 +18,7 @@
  * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
  * The Jalview Authors are detailed in the 'AUTHORS' file.
  */
-package MCview;
+package mc_view;
 
 import java.awt.Color;
 

diff --git a/src/MCview/MCMatrix.java b/src/mc_view/MCMatrix.java
similarity index 99%
rename from src/MCview/MCMatrix.java
rename to src/mc_view/MCMatrix.java
index 8f29c1b..01be1f9 100755 (executable)
--- a/src/MCview/MCMatrix.java
+++ b/src/mc_view/MCMatrix.java
@@ -18,7 +18,7 @@
  * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
  * The Jalview Authors are detailed in the 'AUTHORS' file.
  */
-package MCview;
+package mc_view;
 
 public class MCMatrix
 {

diff --git a/src/MCview/PDBCanvas.java b/src/mc_view/PDBCanvas.java
similarity index 99%
rename from src/MCview/PDBCanvas.java
rename to src/mc_view/PDBCanvas.java
index ab172f2..c15b54f 100644 (file)
--- a/src/MCview/PDBCanvas.java
+++ b/src/mc_view/PDBCanvas.java
@@ -18,7 +18,7 @@
  * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
  * The Jalview Authors are detailed in the 'AUTHORS' file.
  */
-package MCview;
+package mc_view;
 
 import jalview.analysis.AlignSeq;
 import jalview.datamodel.PDBEntry;

diff --git a/src/MCview/PDBChain.java b/src/mc_view/PDBChain.java
similarity index 99%
rename from src/MCview/PDBChain.java
rename to src/mc_view/PDBChain.java
index 904a860..a3c8bee 100755 (executable)
--- a/src/MCview/PDBChain.java
+++ b/src/mc_view/PDBChain.java
@@ -18,7 +18,7 @@
  * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
  * The Jalview Authors are detailed in the 'AUTHORS' file.
  */
-package MCview;
+package mc_view;
 
 import jalview.analysis.AlignSeq;
 import jalview.datamodel.AlignmentAnnotation;

diff --git a/src/MCview/PDBfile.java b/src/mc_view/PDBfile.java
similarity index 99%
rename from src/MCview/PDBfile.java
rename to src/mc_view/PDBfile.java
index ebc52aa..0435def 100755 (executable)
--- a/src/MCview/PDBfile.java
+++ b/src/mc_view/PDBfile.java
@@ -18,7 +18,7 @@
  * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
  * The Jalview Authors are detailed in the 'AUTHORS' file.
  */
-package MCview;
+package mc_view;
 
 import jalview.datamodel.AlignmentAnnotation;
 import jalview.datamodel.DBRefSource;

diff --git a/src/MCview/Residue.java b/src/mc_view/Residue.java
similarity index 98%
rename from src/MCview/Residue.java
rename to src/mc_view/Residue.java
index edef5f1..62e4c29 100755 (executable)
--- a/src/MCview/Residue.java
+++ b/src/mc_view/Residue.java
@@ -18,7 +18,7 @@
  * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
  * The Jalview Authors are detailed in the 'AUTHORS' file.
  */
-package MCview;
+package mc_view;
 
 import java.util.Vector;
 

diff --git a/src/MCview/Zsort.java b/src/mc_view/Zsort.java
similarity index 99%
rename from src/MCview/Zsort.java
rename to src/mc_view/Zsort.java
index 6bdbafa..a2080eb 100755 (executable)
--- a/src/MCview/Zsort.java
+++ b/src/mc_view/Zsort.java
@@ -18,7 +18,7 @@
  * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
  * The Jalview Authors are detailed in the 'AUTHORS' file.
  */
-package MCview;
+package mc_view;
 
 import java.util.Vector;