adjust start and end of intersecting group relative to selected region

diff --git a/src/jalview/datamodel/AlignmentView.java b/src/jalview/datamodel/AlignmentView.java
index 2da7c80..21b5e7f 100644 (file)
--- a/src/jalview/datamodel/AlignmentView.java
+++ b/src/jalview/datamodel/AlignmentView.java
@@ -150,6 +150,9 @@ public class AlignmentView
             {\r
               sg.setEndRes(esel);\r
             }\r
+            sg.setStartRes(sg.getStartRes()-ssel+1);\r
+            sg.setEndRes(sg.getEndRes()-ssel+1);\r
+            \r
             isg.addElement(sg);\r
           }\r
         }\r