Use DBRefSource.PDB

diff --git a/src/jalview/io/DBRefFetcher.java b/src/jalview/io/DBRefFetcher.java
index 92e7e4b..17526ac 100644 (file)
--- a/src/jalview/io/DBRefFetcher.java
+++ b/src/jalview/io/DBRefFetcher.java
@@ -306,23 +306,21 @@ public class DBRefFetcher implements Runnable
 \r
           continue;\r
         }\r
-        else\r
-        {\r
 \r
-          if(entry.getFeature()!=null)\r
+        if (entry.getFeature() != null)\r
+        {\r
+          Enumeration e = entry.getFeature().elements();\r
+          while (e.hasMoreElements())\r
           {\r
-            Enumeration e = entry.getFeature().elements();\r
-            while (e.hasMoreElements())\r
-            {\r
-              SequenceFeature sf = (SequenceFeature) e.nextElement();\r
-              sf.setBegin(sf.getBegin() + absStart + 1);\r
-              sf.setEnd(sf.getEnd() + absStart + 1);\r
-            }\r
+            SequenceFeature sf = (SequenceFeature) e.nextElement();\r
+            sf.setBegin(sf.getBegin() + absStart + 1);\r
+            sf.setEnd(sf.getEnd() + absStart + 1);\r
           }\r
 \r
           sbuffer.append(sequence.getName() +\r
-                         " HAS "+absStart+" PREFIXED RESIDUES COMPARED TO UNIPROT - ANY SEQUENCE FEATURES"\r
-                        +" HAVE BEEN ADJUSTED ACCORDINGLY \n");\r
+                         " HAS " + absStart +\r
+              " PREFIXED RESIDUES COMPARED TO UNIPROT - ANY SEQUENCE FEATURES"\r
+                         + " HAVE BEEN ADJUSTED ACCORDINGLY \n");\r
           absStart = 0;\r
         }\r
 \r
@@ -338,7 +336,7 @@ public class DBRefFetcher implements Runnable
       while(e.hasMoreElements())\r
       {\r
         PDBEntry pdb = (PDBEntry)e.nextElement();\r
-        if(!pdb.getType().equals("PDB"))\r
+        if(!pdb.getType().equals(DBRefSource.PDB))\r
           continue;\r
 \r
         sequence.addDBRef(new DBRefEntry(DBRefSource.PDB,\r