Dont use updateResidueView

diff --git a/src/jalview/gui/AlignFrame.java b/src/jalview/gui/AlignFrame.java
index a977623..67995b2 100755 (executable)
--- a/src/jalview/gui/AlignFrame.java
+++ b/src/jalview/gui/AlignFrame.java
@@ -407,7 +407,8 @@ public class AlignFrame extends GAlignFrame
 \r
   protected void colourTextMenuItem_actionPerformed(ActionEvent e)\r
   {\r
-      updateResidueView();\r
+      viewport.setColourText( colourTextMenuItem.isSelected() );\r
+      alignPanel.RefreshPanels();\r
   }\r
 \r
   void SetFont()\r
@@ -427,18 +428,21 @@ public class AlignFrame extends GAlignFrame
 \r
   protected void wrapMenuItem_actionPerformed(ActionEvent e)\r
   {\r
-     updateResidueView();\r
+    viewport.setWrapAlignment( wrapMenuItem.isSelected() );\r
+    alignPanel.RefreshPanels();\r
   }\r
 \r
 \r
   public void viewBoxesMenuItem_actionPerformed(ActionEvent e)\r
   {\r
-     updateResidueView();\r
+    viewport.setShowBoxes( viewBoxesMenuItem.isSelected() );\r
+    alignPanel.RefreshPanels();\r
   }\r
 \r
   public void viewTextMenuItem_actionPerformed(ActionEvent e)\r
   {\r
-     updateResidueView();\r
+    viewport.setShowText( viewTextMenuItem.isSelected() );\r
+    alignPanel.RefreshPanels();\r
   }\r
 \r
 \r
@@ -449,7 +453,7 @@ public class AlignFrame extends GAlignFrame
   }\r
 \r
 \r
-  void updateResidueView()\r
+ /* void updateResidueView()\r
   {\r
     if (viewport.getSelection().size() == 0)\r
      {\r
@@ -483,7 +487,7 @@ public class AlignFrame extends GAlignFrame
        sg.setColourText(colourTextMenuItem.isSelected());\r
      }\r
     alignPanel.RefreshPanels();\r
-  }\r
+  }*/\r
 \r
 \r
   public void consensusGraphMenuItem_actionPerformed(ActionEvent e)\r