JAL-845 TODO comment added

diff --git a/src/jalview/datamodel/Alignment.java b/src/jalview/datamodel/Alignment.java
index f31fcd8..91108bc 100755 (executable)
--- a/src/jalview/datamodel/Alignment.java
+++ b/src/jalview/datamodel/Alignment.java
@@ -1612,6 +1612,10 @@ public class Alignment implements AlignmentI
     {
       return false;
     }
+
+    // TODO: match sequence ids, allow different sequence ordering?
+    // TODO: allow for stop/start codons?
+    // TODO: exclude introns
     int i = 0;
     for (SequenceI seq : this.getSequences())
     {