Remove redundancy from eclipse

diff --git a/src/jalview/analysis/NJTree.java b/src/jalview/analysis/NJTree.java
index 6c239be..46a2ced 100755 (executable)
--- a/src/jalview/analysis/NJTree.java
+++ b/src/jalview/analysis/NJTree.java
@@ -253,11 +253,11 @@ public class NJTree
         {\r
             if (type.equals("NJ"))\r
             {\r
-                float mind = findMinNJDistance();\r
+                findMinNJDistance();\r
             }\r
             else\r
             {\r
-                float mind = findMinDistance();\r
+                findMinDistance();\r
             }\r
 \r
             Cluster c = joinClusters(mini, minj);\r
@@ -291,7 +291,7 @@ public class NJTree
             }\r
         }\r
 \r
-        Cluster c = joinClusters(one, two);\r
+        joinClusters(one, two);\r
         top = (SequenceNode) (node.elementAt(one));\r
 \r
         reCount(top);\r
@@ -375,12 +375,7 @@ public class NJTree
     public void findNewNJDistances(SequenceNode tmpi, SequenceNode tmpj,\r
         float dist)\r
     {\r
-        float ih = 0;\r
-        float jh = 0;\r
-\r
-        SequenceNode sni = tmpi;\r
-        SequenceNode snj = tmpj;\r
-\r
+     \r
         tmpi.dist = ((dist + ri) - rj) / 2;\r
         tmpj.dist = (dist - tmpi.dist);\r
 \r
@@ -469,8 +464,6 @@ public class NJTree
      */\r
     public void findClusterNJDistance(int i, int j)\r
     {\r
-        int noi = ((Cluster) cluster.elementAt(i)).value.length;\r
-        int noj = ((Cluster) cluster.elementAt(j)).value.length;\r
 \r
         // New distances from cluster to others\r
         float[] newdist = new float[noseqs];\r
@@ -1121,15 +1114,6 @@ public class NJTree
         }\r
     }\r
 \r
-    /**\r
-     * DOCUMENT ME!\r
-     *\r
-     * @param node DOCUMENT ME!\r
-     */\r
-    public void setMaxDist(SequenceNode node)\r
-    {\r
-        this.maxdist = maxdist;\r
-    }\r
 \r
     /**\r
      * DOCUMENT ME!\r