-<html>
-<head><title>What's new ?</title></head>
-<body>
-<p><strong>What's new ?</strong> </p>
-<p>If you are reading this then you will already have seen some of the recent changes
- made to Jalview.<br>
- Jalview takes advantage of some of the more recent user interface developments
- in the Java programming language. For instance Jalview is now a multi windowed
- application, this keeps all your Jalview windows neatly together in one main
- application window. </p>
-<p>If you were familiar with the original Jalview, here is a list of important
- features you should know about the current development:</p>
-<ul>
- <li>Editing sequences is no longer the default when mouse clicking the alignment.
- Instead, mouse clicking on the alignment creates a "selection region"
- which may be full sequences or groups of residues.</li>
- <li>To insert or edit the gaps in one sequence in alignment, the
- "Shift" key must be held down when dragging the mouse.</li>
- <li>To insert or edit gaps for a group of sequences, the
- "Alt" key (or in X windows the "Control"
- key) must be held down.</li>
- <li>Selecting colour schemes in the colour menu either sets just the
- "background" colourscheme for the alignment, or - when
- the tickbox "Apply colour to all groups" is ticked,
- applies the scheme to the background and all groups defined on the alignment.</li>
- <li>Use the right mouse button (apple and click on the Mac) whilst
- the pointer is within the selection area to access the "define" region menu to
- define a new region, give it a name, and change its colourscheme and display
- properties.</li>
- <li>Conservation is automatically updated whenever the alignment is edited</li>
- <li>There is no "quick draw" option</li>
- <li>Edits can be undone, and redone!</li>
-</ul>
-</body>
-</html>
+<html>\r
+<head><title>What's new ?</title></head>\r
+<body>\r
+<p><strong>What's new ?</strong> </p>\r
+<p>If you are reading this then you will already have seen some of the recent changes\r
+ made to Jalview.<br>\r
+ Jalview takes advantage of some of the more recent user interface developments\r
+ in the Java programming language. For instance Jalview is now a multi windowed\r
+ application, this keeps all your Jalview windows neatly together in one main\r
+ application window. </p>\r
+<p>If you were familiar with the original Jalview, here is a list of important\r
+ features you should know about the current development:</p>\r
+<ul>\r
+ <li>Editing sequences is no longer the default when mouse clicking the alignment. \r
+ Instead, mouse clicking on the alignment creates a "selection region" \r
+ which may be full sequences or groups of residues.</li>\r
+ <li>To insert or edit the gaps in one sequence in alignment, the "Shift" \r
+ key must be held down when dragging the mouse.</li>\r
+ <li>To insert or edit gaps for a group of sequences, the "Alt" key \r
+ (or in X windows the "Control" key) must be held down.</li>\r
+ <li>Selecting colour schemes in the colour menu either sets just the "background" \r
+ colourscheme for the alignment, or - when the tickbox "Apply colour to \r
+ all groups" is ticked, applies the scheme to the background and all groups \r
+ defined on the alignment.</li>\r
+ <li>Use the right mouse button (apple and click on the Mac) whilst the pointer \r
+ is within the selection area to access the "define" region menu \r
+ to define a new region, give it a name, and change its colourscheme and display \r
+ properties.</li>\r
+ <li>Conservation is automatically updated whenever the alignment is edited</li>\r
+ <li>There is no "quick draw" option</li>\r
+ <li>Edits can be undone, and redone!</li>\r
+</ul>\r
+<table border="1">\r
+ <tr> \r
+ <td><div align="center"><em><strong>Release</strong></em></div></td>\r
+ <td><div align="center"><em><strong>New Features</strong></em></div></td>\r
+ <td><div align="center"><em><strong>Issues Resolved</strong></em></div></td>\r
+ </tr>\r
+ <tr> \r
+ <td> <div align="center"><strong>2.0</strong><br>\r
+ 20/6/05</div></td>\r
+ <td ><ul>\r
+ <li> New codebase</li>\r
+ </ul></td>\r
+ <td > </td>\r
+ </tr>\r
+ <tr> \r
+ <td><div align="center"><strong>2.01</strong><br>\r
+ 12/7/05</div></td>\r
+ <td><ul>\r
+ <li>Use delete key for deleting selection.</li>\r
+ <li>Use Mouse wheel to scroll sequences.</li>\r
+ <li>Help file updated to describe how to add alignment annotations.</li>\r
+ <li>Version and build date written to build properties file.</li>\r
+ <li>InstallAnywhere installation will check for updates at launch of Jalview.</li>\r
+ </ul></td>\r
+ <td><ul>\r
+ <li>Delete gaps bug fixed.</li>\r
+ <li>FileChooser sorts columns.</li>\r
+ <li>Can remove groups one by one.</li>\r
+ <li>Filechooser icons installed.</li>\r
+ <li>Finder ignores return character when searching. Return key will initiate \r
+ a search.<br>\r
+ </li>\r
+ </ul></td>\r
+ </tr>\r
+ <tr> \r
+ <td> <div align="center"><strong>2.02</strong><br>\r
+ 18/7/05</div></td>\r
+ <td> </td>\r
+ <td><ul>\r
+ <li>Copy & Paste order of sequences maintains alignment order.</li>\r
+ </ul></td>\r
+ </tr>\r
+ <tr> \r
+ <td> <div align="center"><strong>2.03</strong><br>\r
+ 18/8/05</div></td>\r
+ <td><ul>\r
+ <li>Set Proxy server name and port in preferences</li>\r
+ <li>Multiple URL links from sequence ids</li>\r
+ <li>User Defined Colours can have a scheme name and added to Colour Menu</li>\r
+ <li>Choose to ignore gaps in consensus calculation</li>\r
+ <li>Unix users can set default web browser</li>\r
+ <li>Runs without GUI for batch processing</li>\r
+ <li>Dynamically generated Web Service Menus</li>\r
+ </ul></td>\r
+ <td><ul>\r
+ <li>InstallAnywhere download for Sparc Solaris</li>\r
+ </ul></td>\r
+ </tr>\r
+</table>\r
+<p> </p>\r
+</body>\r
+</html>\r
git://source.jalview.org / jalview.git / commitdiff