JAL-2629 hmm annotation consensus characters are now upper case

diff --git a/src/jalview/analysis/AAFrequency.java b/src/jalview/analysis/AAFrequency.java
index 219794b..72b3d00 100755 (executable)
--- a/src/jalview/analysis/AAFrequency.java
+++ b/src/jalview/analysis/AAFrequency.java
@@ -418,7 +418,8 @@ public class AAFrequency
 
       String description = value + " bits";
       information.annotations[i] = new Annotation(
-              Character.toString(hmm.getConsensusAtAlignColumn(i)),
+              Character.toString(Character
+                      .toUpperCase(hmm.getConsensusAtAlignColumn(i))),
               description, ' ', value);
     }
     information.graphMax = max;