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JAL-674 patch to ensure existing annotation is properly wired up when
authorJim Procter <j.procter@dundee.ac.uk>
Mon, 20 Oct 2014 09:58:54 +0000 (10:58 +0100)
committerJim Procter <j.procter@dundee.ac.uk>
Tue, 21 Oct 2014 10:33:19 +0000 (11:33 +0100)
transferred to newly annotated version

src/jalview/analysis/AlignSeq.java patch | blob | history

diff --git a/src/jalview/analysis/AlignSeq.java b/src/jalview/analysis/AlignSeq.java
index dd29d73..e7fed8d 100755 (executable)
--- a/src/jalview/analysis/AlignSeq.java
+++ b/src/jalview/analysis/AlignSeq.java
@@ -1116,6 +1116,7 @@ public class AlignSeq
                 AlignmentAnnotation alan = annotations.get(ap);
                 alan.liftOver(sq, sp2sq);
                 alan.setSequenceRef(sq);
+                sq.addAlignmentAnnotation(alan);
               }
             }
             else