// identical annotations means identical contact matrix mappings
Assert.assertEquals(newAl.getDataset().getSequenceAt(0).getContactMaps().size(), 1);
- Assert.assertTrue(view1aa!=view2aa);
- restoredMat = newAl.getContactMatrixFor(view1aa);
- newviewMat = newviewAl.getContactMatrixFor(view2aa);
- Assert.assertTrue(restoredMat!=newviewMat);
+ // TODO Verify when distinct mappable PAEs are created, only one PAE dataset is actually held.
+ // Assert.assertTrue(view1aa!=view2aa);
+ // restoredMat = newAl.getContactMatrixFor(view1aa);
+ // newviewMat = newviewAl.getContactMatrixFor(view2aa);
+ // Assert.assertTrue(restoredMat!=newviewMat);
}