puts( "Mapping file : " + mapping_file )
log << "Mapping file : " + mapping_file + ld
end
- if ( extension > 0 )
+ if extension > 0
puts( "Extension : " + extension.to_s )
log << "Extension : " + extension.to_s + ld
end
+ if extract_linkers
+ puts( "Extract linkers : true" )
+ log << "Extract linkers : true" + ld
+ end
log << "Date : " + Time.now.to_s + ld
puts
new_msa_domains_extended = Msa.new
per_species_counter = 0
linkers = ""
-
+
puts basename
-
+
File.open( input_file ) do | file |
while line = file.gets
line.strip!
rescue Exception => e
Util.fatal_error( PRG_NAME, "error: " + e.to_s )
end
-
+
if extract_linkers
begin
f = File.open( out_dir + Constants::FILE_SEPARATOR + basename + LINKERS_SUFFIX , 'a' )
Util.fatal_error( PRG_NAME, "error: " + e.to_s )
end
end
-
+
end