new jalview paper and prep for release

diff --git a/help/html/index.html b/help/html/index.html
index adc1fa5..a349349 100755 (executable)
--- a/help/html/index.html
+++ b/help/html/index.html
@@ -6,13 +6,14 @@
 <br><br>
 <strong>Jalview Documentation</strong></font>
 <br><br>
-Jalview (2004) is a fast Java multiple alignment editor and analysis tool. It
+Jalview (2009) is a fast Java multiple alignment editor and analysis tool. It
 features many of the functions of <a href="http://www.compbio.dundee.ac.uk/Software/Amas/amas.html">AMAS</a>,
 for the analysis of sub-families and the prediction of functional sites, but is
 fully interactive. (View the <a href="http://www.jalview.org">Jalview homepage</a>).
 <p></p>
-<p> If you use Jalview in your work, please cite the bioinformatics paper: </p>
-<p>Clamp, M., Cuff, J., Searle, S. M. and Barton, G. J. (2004), "The Jalview
-  Java Alignment Editor", Bioinformatics, 20, 426-7.</p>
+<p> If you use Jalview in your work, please cite the Jalview 2 paper in Bioinformatics: </p>
+<p>Waterhouse, A.M., Procter, J.B., Martin, D.M.A, Clamp, M., Barton, G.J (2009), <br>
+   &quot;Jalview version 2: A Multiple Sequence Alignment and Analysis Workbench,&quot;<br>
+   <em>Bioinformatics</em> doi: 10.1093/bioinformatics/btp033
 </body>
 </html>

diff --git a/help/html/releases.html b/help/html/releases.html
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@@ -17,6 +17,18 @@
                </td>
        </tr>
        <tr>
+       <td>
+       <div align="center"><strong>2.4.0.b2</strong><br>
+               2/6/2009</div>
+       </td>
+       <td>
+       <ul><li>Experimental support for google analytics usage tracking.</li>
+       </ul>
+       </td>
+       <td>
+       </td>
+       </tr>
+       <tr>
            <td>
              <div align="center"><strong>2.4 bugfixes</strong><br>
                12/11/2008</div>
@@ -34,7 +46,7 @@
                <td>
                
                <div align="center"><strong>2.4</strong><br>
-               27/8//2008</div>
+               27/8/2008</div>
                </td>
                <td>
                        <em>User Interface</em>