Must update globalColourScheme with new consensus

diff --git a/src/jalview/appletgui/AlignViewport.java b/src/jalview/appletgui/AlignViewport.java
index e513829..4b4d74d 100755 (executable)
--- a/src/jalview/appletgui/AlignViewport.java
+++ b/src/jalview/appletgui/AlignViewport.java
@@ -301,6 +301,9 @@ public class AlignViewport
       consensus.annotations = annotations;\r
     }\r
 \r
+    if(globalColourScheme!=null)\r
+          globalColourScheme.setConsensus(vconsensus);\r
+\r
   }\r
 \r
   public SequenceGroup getSelectionGroup()\r