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authorcmzmasek@gmail.com <cmzmasek@gmail.com@ca865154-3058-d1c3-3e42-d8f55a55bdbd>
Thu, 20 Dec 2012 00:38:25 +0000 (00:38 +0000)
committercmzmasek@gmail.com <cmzmasek@gmail.com@ca865154-3058-d1c3-3e42-d8f55a55bdbd>
Thu, 20 Dec 2012 00:38:25 +0000 (00:38 +0000)
forester/data/tol_144.xml patch | blob | history

diff --git a/forester/data/tol_144.xml b/forester/data/tol_144.xml
index 7d1141d..1d9c1ce 100644 (file)
--- a/forester/data/tol_144.xml
+++ b/forester/data/tol_144.xml
@@ -610,6 +610,7 @@
                                                             </taxonomy>
                                                           </clade>
                                                           <clade>
+                                                            <name>CANFA</name>
                                                             <taxonomy>
                                                               <id provider="uniprot">9615</id>
                                                               <code>CANFA</code>
@@ -622,6 +623,7 @@
                                                           </clade>
                                                         </clade>
                                                         <clade>
+                                                          <name>FELCA</name>
                                                           <taxonomy>
                                                             <id provider="uniprot">9685</id>
                                                             <code>FELCA</code>
@@ -749,13 +751,6 @@
                                                   <scientific_name>Metatheria</scientific_name>
                                                   <common_name>Marsupials</common_name>
                                                 </taxonomy>
-                                                <distribution>
-                                                  <point geodetic_datum="?" alt_unit="?">
-                                                    <lat>0</lat>
-                                                    <long>0</long>
-                                                    <alt>0</alt>
-                                                  </point>
-                                                </distribution>
                                                 <reference doi="10.1016/j.ympev.2004.05.004">
                                                   <desc>First combined cladistic analysis of marsupial mammal interrelationships</desc>
                                                 </reference>
@@ -788,6 +783,7 @@
                                                   </clade>
                                                 </clade>
                                                 <clade>
+                                                  <name>MONDO</name>
                                                   <taxonomy>
                                                     <id provider="uniprot">13616</id>
                                                     <code>MONDO</code>
@@ -800,6 +796,7 @@
                                               </clade>
                                             </clade>
                                             <clade>
+                                              <name>ORNAN</name>
                                               <taxonomy>
                                                 <id provider="uniprot">9258</id>
                                                 <code>ORNAN</code>
@@ -828,6 +825,7 @@
                                                     <rank>family</rank>
                                                   </taxonomy>
                                                   <clade>
+                                                    <name>CHICK</name>
                                                     <taxonomy>
                                                       <id provider="uniprot">9031</id>
                                                       <code>CHICK</code>
@@ -862,6 +860,7 @@
                                                 </clade>
                                               </clade>
                                               <clade>
+                                                <name>TAEGU</name>
                                                 <taxonomy>
                                                   <id provider="uniprot">59729</id>
                                                   <code>TAEGU</code>
@@ -874,6 +873,7 @@
                                               </clade>
                                             </clade>
                                             <clade>
+                                              <name>ANOCA</name>
                                               <taxonomy>
                                                 <id provider="eol">795869</id>
                                                 <code>ANOCA</code>
@@ -890,14 +890,34 @@
                                         </clade>
                                         <clade>
                                           <taxonomy>
-                                            <id provider="uniprot">8364</id>
-                                            <code>XENTR</code>
-                                            <scientific_name>Xenopus tropicalis</scientific_name>
-                                            <common_name>Western clawed frog</common_name>
-                                            <synonym>Silurana tropicalis</synonym>
-                                            <rank>species</rank>
-                                            <uri>http://genoweb.univ-rennes1.fr/OGP/xenopus%20tropicalis.jpg</uri>
+                                            <id provider="uniprot">8353</id>
+                                            <scientific_name>Xenopus</scientific_name>
+                                            <rank>genus</rank>
                                           </taxonomy>
+                                          <clade>
+                                            <name>XENTR</name>
+                                            <taxonomy>
+                                              <id provider="uniprot">8364</id>
+                                              <code>XENTR</code>
+                                              <scientific_name>Xenopus tropicalis</scientific_name>
+                                              <common_name>Western clawed frog</common_name>
+                                              <synonym>Silurana tropicalis</synonym>
+                                              <rank>species</rank>
+                                              <uri>http://genoweb.univ-rennes1.fr/OGP/xenopus%20tropicalis.jpg</uri>
+                                            </taxonomy>
+                                          </clade>
+                                          <clade>
+                                            <taxonomy>
+                                              <id provider="uniprot">8355</id>
+                                              <code>XENLA</code>
+                                              <scientific_name>Xenopus laevis</scientific_name>
+                                              <authority>Daudin, 1802</authority>
+                                              <common_name>African clawed frog</common_name>
+                                              <synonym>Bufo laevis</synonym>
+                                              <rank>species</rank>
+                                              <uri>http://upload.wikimedia.org/wikipedia/commons/e/e3/Xenopus_laevis.jpg</uri>
+                                            </taxonomy>
+                                          </clade>
                                         </clade>
                                       </clade>
                                       <clade>
@@ -919,6 +939,7 @@
                                             <clade>
                                               <name>Smegmamorpha</name>
                                               <clade>
+                                                <name>GASAC</name>
                                                 <taxonomy>
                                                   <id provider="uniprot">69293</id>
                                                   <code>GASAC</code>
@@ -929,6 +950,7 @@
                                                 </taxonomy>
                                               </clade>
                                               <clade>
+                                                <name>ORYLA</name>
                                                 <taxonomy>
                                                   <id provider="uniprot">8090</id>
                                                   <code>ORYLA</code>
@@ -948,6 +970,7 @@
                                                 <rank>family</rank>
                                               </taxonomy>
                                               <clade>
+                                                <name>FUGRU</name>
                                                 <taxonomy>
                                                   <id provider="uniprot">31033</id>
                                                   <code>FUGRU</code>
@@ -959,6 +982,7 @@
                                                 </taxonomy>
                                               </clade>
                                               <clade>
+                                                <name>TETNG</name>
                                                 <taxonomy>
                                                   <id provider="uniprot">99883</id>
                                                   <code>TETNG</code>
@@ -983,6 +1007,7 @@
                                           </clade>
                                         </clade>
                                         <clade>
+                                          <name>DANRE</name>
                                           <taxonomy>
                                             <id provider="uniprot">7955</id>
                                             <code>DANRE</code>
@@ -1032,6 +1057,7 @@
                                       <rank>genus</rank>
                                     </taxonomy>
                                     <clade>
+                                      <name>CIOIN</name>
                                       <taxonomy>
                                         <id provider="uniprot">7719</id>
                                         <code>CIOIN</code>
@@ -1043,6 +1069,7 @@
                                       </taxonomy>
                                     </clade>
                                     <clade>
+                                      <name>CIOSA</name>
                                       <taxonomy>
                                         <id provider="uniprot">51511</id>
                                         <code>CIOSA</code>
@@ -1054,6 +1081,7 @@
                                     </clade>
                                   </clade>
                                   <clade>
+                                    <name>OIKDI</name>
                                     <taxonomy>
                                       <id provider="ncbi">34765</id>
                                       <code>OIKDI</code>
@@ -1066,6 +1094,7 @@
                                 </clade>
                               </clade>
                               <clade>
+                                <name>BRAFL</name>
                                 <taxonomy>
                                   <id provider="uniprot">7739</id>
                                   <code>BRAFL</code>
@@ -1080,6 +1109,7 @@
                             <clade>
                               <name>Hemichordata &amp; Echinodermata</name>
                               <clade>
+                                <name>SACKO</name>
                                 <taxonomy>
                                   <id provider="uniprot">10224</id>
                                   <code>SACKO</code>
@@ -1091,6 +1121,7 @@
                                 </taxonomy>
                               </clade>
                               <clade>
+                                <name>STRPU</name>
                                 <taxonomy>
                                   <id provider="uniprot">7668</id>
                                   <code>STRPU</code>
@@ -1149,6 +1180,7 @@
                                                   <rank>family</rank>
                                                 </taxonomy>
                                                 <clade>
+                                                  <name>AEDAE</name>
                                                   <taxonomy>
                                                     <id provider="uniprot">7159</id>
                                                     <code>AEDAE</code>
@@ -1160,6 +1192,7 @@
                                                   </taxonomy>
                                                 </clade>
                                                 <clade>
+                                                  <name>ANOGA</name>
                                                   <taxonomy>
                                                     <id provider="uniprot">7165</id>
                                                     <code>ANOGA</code>
@@ -1170,6 +1203,7 @@
                                                   </taxonomy>
                                                 </clade>
                                                 <clade>
+                                                  <name>CULPI</name>
                                                   <taxonomy>
                                                     <id provider="uniprot">7175</id>
                                                     <code>CULPI</code>
@@ -1187,6 +1221,7 @@
                                                   <rank>subgenus</rank>
                                                 </taxonomy>
                                                 <clade>
+                                                  <name>DROME</name>
                                                   <taxonomy>
                                                     <id provider="uniprot">7227</id>
                                                     <code>DROME</code>
@@ -1196,6 +1231,7 @@
                                                   </taxonomy>
                                                 </clade>
                                                 <clade>
+                                                  <name>DROPS</name>
                                                   <taxonomy>
                                                     <id provider="uniprot">46245</id>
                                                     <code>DROPS</code>
@@ -1207,6 +1243,7 @@
                                               </clade>
                                             </clade>
                                             <clade>
+                                              <name>BOMMO</name>
                                               <taxonomy>
                                                 <id provider="uniprot">7091</id>
                                                 <code>BOMMO</code>
@@ -1223,6 +1260,7 @@
                                               <common_name>wasps, ants and bees</common_name>
                                             </taxonomy>
                                             <clade>
+                                              <name>APIME</name>
                                               <taxonomy>
                                                 <id provider="uniprot">7460</id>
                                                 <code>APIME</code>
@@ -1232,6 +1270,7 @@
                                               </taxonomy>
                                             </clade>
                                             <clade>
+                                              <name>NASVI</name>
                                               <taxonomy>
                                                 <id provider="uniprot">7425</id>
                                                 <code>NASVI</code>
@@ -1243,6 +1282,7 @@
                                           </clade>
                                         </clade>
                                         <clade>
+                                          <name>TRICA</name>
                                           <taxonomy>
                                             <id provider="uniprot">7070</id>
                                             <code>TRICA</code>
@@ -1259,6 +1299,7 @@
                                           <rank>order</rank>
                                         </taxonomy>
                                         <clade>
+                                          <name>ACYPI</name>
                                           <taxonomy>
                                             <id provider="uniprot">7029</id>
                                             <code>ACYPI</code>
@@ -1268,6 +1309,7 @@
                                           </taxonomy>
                                         </clade>
                                         <clade>
+                                          <name>RHOPR</name>
                                           <taxonomy>
                                             <id provider="uniprot">13249</id>
                                             <code>RHOPR</code>
@@ -1297,6 +1339,7 @@
                                         </taxonomy>
                                       </clade>
                                       <clade>
+                                        <name>DAPPU</name>
                                         <taxonomy>
                                           <id provider="uniprot">6669</id>
                                           <code>DAPPU</code>
@@ -1385,6 +1428,7 @@
                                   </clade>
                                 </clade>
                                 <clade>
+                                  <name>IXOSC</name>
                                   <taxonomy>
                                     <id provider="uniprot">6945</id>
                                     <code>IXOSC</code>
@@ -1414,6 +1458,7 @@
                                       <rank>genus</rank>
                                     </taxonomy>
                                     <clade>
+                                      <name>CAEBR</name>
                                       <taxonomy>
                                         <id provider="uniprot">6238</id>
                                         <code>CAEBR</code>
@@ -1422,6 +1467,7 @@
                                       </taxonomy>
                                     </clade>
                                     <clade>
+                                      <name>CAEEL</name>
                                       <taxonomy>
                                         <id provider="uniprot">6239</id>
                                         <code>CAEEL</code>
@@ -1431,6 +1477,7 @@
                                     </clade>
                                   </clade>
                                   <clade>
+                                    <name>PRIPA</name>
                                     <taxonomy>
                                       <id provider="uniprot">54126</id>
                                       <code>PRIPA</code>
@@ -1440,6 +1487,7 @@
                                   </clade>
                                 </clade>
                                 <clade>
+                                  <name>BRUMA</name>
                                   <taxonomy>
                                     <id provider="uniprot">6279</id>
                                     <code>BRUMA</code>
@@ -1465,7 +1513,10 @@
                                     <taxonomy>
                                       <id provider="uniprot">283909</id>
                                       <scientific_name>Capitella teleta</scientific_name>
+                                      <authority>Blake, Grassle &amp; Eckelbarger, 2009</authority>
+                                      <synonym>Capitella sp. I</synonym>
                                       <rank>species</rank>
+                                      <uri>http://genome.jgi-psf.org/Capca1/capitella.jpg</uri>
                                     </taxonomy>
                                   </clade>
                                   <clade>
@@ -1475,17 +1526,57 @@
                                       <scientific_name>Helobdella robusta</scientific_name>
                                       <common_name>Californian leech</common_name>
                                       <rank>species</rank>
+                                      <uri>http://genome.jgi-psf.org/Helro1/Helro_leech.jpg</uri>
                                     </taxonomy>
                                   </clade>
                                 </clade>
                                 <clade>
                                   <taxonomy>
-                                    <id provider="uniprot">225164</id>
-                                    <code>LOTGI</code>
-                                    <scientific_name>Lottia gigantea</scientific_name>
-                                    <common_name>Owl limpet</common_name>
-                                    <rank>species</rank>
+                                    <id provider="uniprot">6447</id>
+                                    <scientific_name>Mollusca</scientific_name>
+                                    <rank>phylum</rank>
                                   </taxonomy>
+                                  <clade>
+                                    <taxonomy>
+                                      <id provider="uniprot">6448</id>
+                                      <scientific_name>Gastropoda</scientific_name>
+                                      <rank>class</rank>
+                                    </taxonomy>
+                                    <clade>
+                                      <taxonomy>
+                                        <id provider="uniprot">225164</id>
+                                        <code>LOTGI</code>
+                                        <scientific_name>Lottia gigantea</scientific_name>
+                                        <common_name>Owl limpet</common_name>
+                                        <rank>species</rank>
+                                        <uri>http://nathistoc.bio.uci.edu/Molluscs/OwlLimpet1.jpg</uri>
+                                      </taxonomy>
+                                    </clade>
+                                    <clade>
+                                      <taxonomy>
+                                        <id provider="uniprot">6500</id>
+                                        <code>APLCA</code>
+                                        <scientific_name>Aplysia californica</scientific_name>
+                                        <common_name>California sea hare</common_name>
+                                        <rank>species</rank>
+                                        <uri>http://upload.wikimedia.org/wikipedia/commons/e/ef/Aplysia_californica.jpg</uri>
+                                      </taxonomy>
+                                    </clade>
+                                  </clade>
+                                  <clade>
+                                    <taxonomy>
+                                      <id provider="uniprot">29159</id>
+                                      <code>CRAGI</code>
+                                      <scientific_name>Crassostrea gigas</scientific_name>
+                                      <authority>Thunberg, 1793</authority>
+                                      <common_name>Pacific oyster</common_name>
+                                      <synonym>Crassotrea gigas</synonym>
+                                      <synonym>Crassostrea angulata</synonym>
+                                      <synonym>Ostrea gigas</synonym>
+                                      <rank>species</rank>
+                                      <uri>http://www.marlin.ac.uk/imgs/o_cragig.jpg</uri>
+                                    </taxonomy>
+                                  </clade>
                                 </clade>
                               </clade>
                               <clade>
@@ -1495,6 +1586,7 @@
                                   <rank>phylum</rank>
                                 </taxonomy>
                                 <clade>
+                                  <name>SCHMA</name>
                                   <taxonomy>
                                     <id provider="uniprot">6183</id>
                                     <code>SCHMA</code>
@@ -1504,6 +1596,7 @@
                                   </taxonomy>
                                 </clade>
                                 <clade>
+                                  <name>SCHMD</name>
                                   <taxonomy>
                                     <id provider="uniprot">79327</id>
                                     <code>SCHMD</code>
@@ -1552,6 +1645,7 @@
                             </clade>
                           </clade>
                           <clade>
+                            <name>HYDMA</name>
                             <taxonomy>
                               <id provider="eol">9119928</id>
                               <code>HYDMA</code>
@@ -1564,6 +1658,7 @@
                         </clade>
                       </clade>
                       <clade>
+                        <name>TRIAD</name>
                         <taxonomy>
                           <id provider="uniprot">10228</id>
                           <code>TRIAD</code>
@@ -1576,6 +1671,7 @@
                       </clade>
                     </clade>
                     <clade>
+                      <name>AMPQU</name>
                       <taxonomy>
                         <id provider="uniprot">400682</id>
                         <code>AMPQU</code>
@@ -1591,6 +1687,7 @@
                       <rank>family</rank>
                     </taxonomy>
                     <clade>
+                      <name>MONBE</name>
                       <taxonomy>
                         <id provider="uniprot">81824</id>
                         <code>MONBE</code>
@@ -1756,6 +1853,7 @@
                                                       </taxonomy>
                                                     </clade>
                                                     <clade>
+                                                      <name>GIBZE</name>
                                                       <taxonomy>
                                                         <id provider="uniprot">5518</id>
                                                         <code>GIBZE</code>
@@ -1766,6 +1864,7 @@
                                                       </taxonomy>
                                                     </clade>
                                                     <clade>
+                                                      <name>TRIVE</name>
                                                       <taxonomy>
                                                         <id provider="uniprot">29875</id>
                                                         <code>TRIVE</code>
@@ -1777,6 +1876,7 @@
                                                     </clade>
                                                   </clade>
                                                   <clade>
+                                                    <name>MAGGR</name>
                                                     <taxonomy>
                                                       <id provider="uniprot">148305</id>
                                                       <code>MAGGR</code>
@@ -1830,6 +1930,7 @@
                                                       </clade>
                                                     </clade>
                                                     <clade>
+                                                      <name>CHAGB</name>
                                                       <taxonomy>
                                                         <id provider="eol">1029505</id>
                                                         <code>CHAGB</code>
@@ -1841,6 +1942,7 @@
                                                     </clade>
                                                   </clade>
                                                   <clade>
+                                                    <name>NEUCR</name>
                                                     <taxonomy>
                                                       <id provider="uniprot">5141</id>
                                                       <code>NEUCR</code>
@@ -1950,6 +2052,7 @@
                                                   </taxonomy>
                                                 </clade>
                                                 <clade>
+                                                  <name>MYCGR</name>
                                                   <taxonomy>
                                                     <id provider="uniprot">54734</id>
                                                     <code>MYCGR</code>
@@ -1960,6 +2063,7 @@
                                                   </taxonomy>
                                                 </clade>
                                                 <clade>
+                                                  <name>MYCPJ</name>
                                                   <taxonomy>
                                                     <id provider="uniprot">64363</id>
                                                     <code>MYCPJ</code>
@@ -2011,6 +2115,7 @@
                                                       <rank>genus</rank>
                                                     </taxonomy>
                                                     <clade>
+                                                      <name>COCHE</name>
                                                       <taxonomy>
                                                         <id provider="uniprot">5016</id>
                                                         <code>COCHE</code>
@@ -2046,6 +2151,7 @@
                                                   </clade>
                                                 </clade>
                                                 <clade>
+                                                  <name>PYRTR</name>
                                                   <taxonomy>
                                                     <id provider="uniprot">426418</id>
                                                     <code>PYRTR</code>
@@ -2056,6 +2162,7 @@
                                                 </clade>
                                               </clade>
                                               <clade>
+                                                <name>PHANO</name>
                                                 <taxonomy>
                                                   <id provider="uniprot">13684</id>
                                                   <code>PHANO</code>
@@ -2077,6 +2184,7 @@
                                           <clade>
                                             <name>Neosartorya_Emericella</name>
                                             <clade>
+                                              <name>EMENI</name>
                                               <taxonomy>
                                                 <id provider="eol">195546</id>
                                                 <code>EMENI</code>
@@ -2087,6 +2195,7 @@
                                               </taxonomy>
                                             </clade>
                                             <clade>
+                                              <name>NEOFI</name>
                                               <taxonomy>
                                                 <id provider="uniprot">331117</id>
                                                 <code>NEOFI</code>
@@ -2102,6 +2211,7 @@
                                               <rank>genus</rank>
                                             </taxonomy>
                                             <clade>
+                                              <name>ASPFL</name>
                                               <taxonomy>
                                                 <id provider="uniprot">5059</id>
                                                 <code>ASPFL</code>
@@ -2110,6 +2220,7 @@
                                               </taxonomy>
                                             </clade>
                                             <clade>
+                                              <name>ASPNG</name>
                                               <taxonomy>
                                                 <id provider="uniprot">5061</id>
                                                 <code>ASPNG</code>
@@ -2127,6 +2238,7 @@
                                           <rank>order</rank>
                                         </taxonomy>
                                         <clade>
+                                          <name>COCIM</name>
                                           <taxonomy>
                                             <id provider="uniprot">5501</id>
                                             <code>COCIM</code>
@@ -2136,6 +2248,7 @@
                                           </taxonomy>
                                         </clade>
                                         <clade>
+                                          <name>UNCRE</name>
                                           <taxonomy>
                                             <id provider="uniprot">336963</id>
                                             <code>UNCRE</code>
@@ -2175,6 +2288,7 @@
                                           <clade>
                                             <name>Saccharomyces</name>
                                             <clade>
+                                              <name>SACCA</name>
                                               <taxonomy>
                                                 <id provider="uniprot">27288</id>
                                                 <code>SACCA</code>
@@ -2185,6 +2299,7 @@
                                               </taxonomy>
                                             </clade>
                                             <clade>
+                                              <name>YEAST</name>
                                               <taxonomy>
                                                 <id provider="uniprot">4932</id>
                                                 <code>YEAST</code>
@@ -2195,6 +2310,7 @@
                                             </clade>
                                           </clade>
                                           <clade>
+                                            <name>PICAN</name>
                                             <taxonomy>
                                               <id provider="uniprot">4905</id>
                                               <code>PICAN</code>
@@ -2210,6 +2326,7 @@
                                           <clade>
                                             <name>Kluyveromyces</name>
                                             <clade>
+                                              <name>KLULA</name>
                                               <taxonomy>
                                                 <id provider="uniprot">28985</id>
                                                 <code>KLULA</code>
@@ -2220,6 +2337,7 @@
                                               </taxonomy>
                                             </clade>
                                             <clade>
+                                              <name>KLUWA</name>
                                               <taxonomy>
                                                 <id provider="uniprot">4914</id>
                                                 <code>KLUWA</code>
@@ -2230,6 +2348,7 @@
                                             </clade>
                                           </clade>
                                           <clade>
+                                            <name>ASHGO</name>
                                             <taxonomy>
                                               <id provider="uniprot">33169</id>
                                               <code>ASHGO</code>
@@ -2250,6 +2369,7 @@
                                             <rank>genus</rank>
                                           </taxonomy>
                                           <clade>
+                                            <name>CANAL</name>
                                             <taxonomy>
                                               <id provider="uniprot">5476</id>
                                               <code>CANAL</code>
@@ -2259,6 +2379,7 @@
                                             </taxonomy>
                                           </clade>
                                           <clade>
+                                            <name>CANTR</name>
                                             <taxonomy>
                                               <id provider="uniprot">5482</id>
                                               <code>CANTR</code>
@@ -2269,6 +2390,7 @@
                                           </clade>
                                         </clade>
                                         <clade>
+                                          <name>DEBHA</name>
                                           <taxonomy>
                                             <id provider="uniprot">4959</id>
                                             <code>DEBHA</code>
@@ -2281,6 +2403,7 @@
                                       </clade>
                                     </clade>
                                     <clade>
+                                      <name>YARLI</name>
                                       <taxonomy>
                                         <id provider="uniprot">4952</id>
                                         <code>YARLI</code>
@@ -2306,6 +2429,7 @@
                                         <rank>genus</rank>
                                       </taxonomy>
                                       <clade>
+                                        <name>SCHJP</name>
                                         <taxonomy>
                                           <id provider="uniprot">4897</id>
                                           <code>SCHJP</code>
@@ -2325,6 +2449,7 @@
                                         </taxonomy>
                                       </clade>
                                       <clade>
+                                        <name>SCHPO</name>
                                         <taxonomy>
                                           <id provider="uniprot">4896</id>
                                           <code>SCHPO</code>
@@ -2335,6 +2460,7 @@
                                       </clade>
                                     </clade>
                                     <clade>
+                                      <name>PNECA</name>
                                       <taxonomy>
                                         <id provider="uniprot">4754</id>
                                         <code>PNECA</code>
@@ -2410,6 +2536,7 @@
                                                           </taxonomy>
                                                         </clade>
                                                         <clade>
+                                                          <name>COPCI</name>
                                                           <taxonomy>
                                                             <id provider="uniprot">5346</id>
                                                             <code>COPCI</code>
@@ -2444,6 +2571,7 @@
                                                     </clade>
                                                   </clade>
                                                   <clade>
+                                                    <name>PLEOS</name>
                                                     <taxonomy>
                                                       <id provider="uniprot">5322</id>
                                                       <code>PLEOS</code>
@@ -2514,6 +2642,7 @@
                                               </clade>
                                             </clade>
                                             <clade>
+                                              <name>GLOTR</name>
                                               <taxonomy>
                                                 <id provider="uniprot">104355</id>
                                                 <code>GLOTR</code>
@@ -2581,6 +2710,7 @@
                                                     <common_name>core polyporoid clade</common_name>
                                                   </taxonomy>
                                                   <clade>
+                                                    <name>TRAVE</name>
                                                     <taxonomy>
                                                       <id provider="uniprot">5325</id>
                                                       <code>TRAVE</code>
@@ -2608,6 +2738,7 @@
                                                 </clade>
                                               </clade>
                                               <clade>
+                                                <name>CERSU</name>
                                                 <taxonomy>
                                                   <id provider="uniprot">42742</id>
                                                   <code>CERSU</code>
@@ -2631,6 +2762,7 @@
                                           </clade>
                                         </clade>
                                         <clade>
+                                          <name>HETAN</name>
                                           <taxonomy>
                                             <id provider="uniprot">13563</id>
                                             <code>HETAN</code>
@@ -2647,6 +2779,7 @@
                                           <rank>family</rank>
                                         </taxonomy>
                                         <clade>
+                                          <name>CRYNE</name>
                                           <taxonomy>
                                             <id provider="uniprot">5207</id>
                                             <code>CRYNE</code>
@@ -2656,6 +2789,7 @@
                                           </taxonomy>
                                         </clade>
                                         <clade>
+                                          <name>TREME</name>
                                           <taxonomy>
                                             <id provider="eol">1029985</id>
                                             <code>TREME</code>
@@ -2684,6 +2818,7 @@
                                         </taxonomy>
                                       </clade>
                                       <clade>
+                                        <name>USTMA</name>
                                         <taxonomy>
                                           <id provider="uniprot">5270</id>
                                           <code>USTMA</code>
@@ -2708,6 +2843,7 @@
                                         <rank>order</rank>
                                       </taxonomy>
                                       <clade>
+                                        <name>MELLP</name>
                                         <taxonomy>
                                           <id provider="eol">156696</id>
                                           <code>MELLP</code>
@@ -2719,6 +2855,7 @@
                                         </taxonomy>
                                       </clade>
                                       <clade>
+                                        <name>PUCGR</name>
                                         <taxonomy>
                                           <id provider="eol">1029947</id>
                                           <code>PUCGR</code>
@@ -2736,6 +2873,7 @@
                                         <scientific_name>mitosporic Sporidiobolales</scientific_name>
                                       </taxonomy>
                                       <clade>
+                                        <name>RHOGR</name>
                                         <taxonomy>
                                           <id provider="uniprot">29898</id>
                                           <code>RHOGR</code>
@@ -2757,6 +2895,7 @@
                                   </clade>
                                 </clade>
                                 <clade>
+                                  <name>WALSE</name>
                                   <taxonomy>
                                     <id provider="uniprot">148960</id>
                                     <code>WALSE</code>
@@ -2779,6 +2918,7 @@
                                   <rank>family</rank>
                                 </taxonomy>
                                 <clade>
+                                  <name>MUCCI</name>
                                   <taxonomy>
                                     <id provider="uniprot">36080</id>
                                     <code>MUCCI</code>
@@ -2788,6 +2928,7 @@
                                   </taxonomy>
                                 </clade>
                                 <clade>
+                                  <name>PHYBL</name>
                                   <taxonomy>
                                     <id provider="uniprot">4837</id>
                                     <code>PHYBL</code>
@@ -2796,6 +2937,7 @@
                                   </taxonomy>
                                 </clade>
                                 <clade>
+                                  <name>RHIOR</name>
                                   <taxonomy>
                                     <id provider="uniprot">64495</id>
                                     <code>RHIOR</code>
@@ -2889,6 +3031,7 @@
                     </clade>
                   </clade>
                   <clade>
+                    <name>ENCCU</name>
                     <taxonomy>
                       <id provider="uniprot">6035</id>
                       <code>ENCCU</code>
@@ -2945,6 +3088,7 @@
                 <rank>genus</rank>
               </taxonomy>
               <clade>
+                <name>DICDI</name>
                 <taxonomy>
                   <id provider="uniprot">44689</id>
                   <code>DICDI</code>
@@ -2954,6 +3098,7 @@
                 </taxonomy>
               </clade>
               <clade>
+                <name>DICPU</name>
                 <taxonomy>
                   <id provider="uniprot">5786</id>
                   <code>DICPU</code>
@@ -2964,6 +3109,7 @@
               </clade>
             </clade>
             <clade>
+              <name>ENTHI</name>
               <taxonomy>
                 <id provider="uniprot">5759</id>
                 <code>ENTHI</code>
@@ -3039,6 +3185,7 @@
                                         <rank>family</rank>
                                       </taxonomy>
                                       <clade>
+                                        <name>FRAVE</name>
                                         <taxonomy>
                                           <id provider="uniprot">57918</id>
                                           <code>FRAVE</code>
@@ -3053,6 +3200,7 @@
                                         </taxonomy>
                                       </clade>
                                       <clade>
+                                        <name>PRUPE</name>
                                         <taxonomy>
                                           <id provider="uniprot">3760</id>
                                           <code>PRUPE</code>
@@ -3066,6 +3214,7 @@
                                       </clade>
                                     </clade>
                                     <clade>
+                                      <name>CUCSA</name>
                                       <taxonomy>
                                         <id provider="uniprot">3659</id>
                                         <code>CUCSA</code>
@@ -3082,6 +3231,7 @@
                                       <rank>subfamily</rank>
                                     </taxonomy>
                                     <clade>
+                                      <name>SOYBN</name>
                                       <taxonomy>
                                         <id provider="uniprot">3847</id>
                                         <code>SOYBN</code>
@@ -3093,6 +3243,7 @@
                                       </taxonomy>
                                     </clade>
                                     <clade>
+                                      <name>MEDTR</name>
                                       <taxonomy>
                                         <id provider="uniprot">3880</id>
                                         <code>MEDTR</code>
@@ -3118,6 +3269,7 @@
                                       <rank>family</rank>
                                     </taxonomy>
                                     <clade>
+                                      <name>MANES</name>
                                       <taxonomy>
                                         <id provider="uniprot">3983</id>
                                         <code>MANES</code>
@@ -3129,6 +3281,7 @@
                                       </taxonomy>
                                     </clade>
                                     <clade>
+                                      <name>RICCO</name>
                                       <taxonomy>
                                         <id provider="uniprot">3988</id>
                                         <code>RICCO</code>
@@ -3141,6 +3294,7 @@
                                     </clade>
                                   </clade>
                                   <clade>
+                                    <name>POPTR</name>
                                     <taxonomy>
                                       <id provider="uniprot">3694</id>
                                       <code>POPTR</code>
@@ -3178,6 +3332,7 @@
                                           <rank>genus</rank>
                                         </taxonomy>
                                         <clade>
+                                          <name>ARALY</name>
                                           <taxonomy>
                                             <id provider="uniprot">59689</id>
                                             <code>ARALY</code>
@@ -3187,6 +3342,7 @@
                                           </taxonomy>
                                         </clade>
                                         <clade>
+                                          <name>ARATH</name>
                                           <taxonomy>
                                             <id provider="uniprot">3702</id>
                                             <code>ARATH</code>
@@ -3208,6 +3364,7 @@
                                       </clade>
                                     </clade>
                                     <clade>
+                                      <name>CARPA</name>
                                       <taxonomy>
                                         <id provider="uniprot">3649</id>
                                         <code>CARPA</code>
@@ -3236,6 +3393,7 @@
                                       </taxonomy>
                                     </clade>
                                     <clade>
+                                      <name>CITSI</name>
                                       <taxonomy>
                                         <id provider="uniprot">2711</id>
                                         <code>CITSI</code>
@@ -3250,6 +3408,7 @@
                                   </clade>
                                 </clade>
                                 <clade>
+                                  <name>EUCGR</name>
                                   <taxonomy>
                                     <id provider="uniprot">71139</id>
                                     <code>EUCGR</code>
@@ -3263,6 +3422,7 @@
                               </clade>
                             </clade>
                             <clade>
+                              <name>VITVI</name>
                               <taxonomy>
                                 <id provider="eol">582304</id>
                                 <code>VITVI</code>
@@ -3341,6 +3501,7 @@
                               </clade>
                             </clade>
                             <clade>
+                              <name>MIMGU</name>
                               <taxonomy>
                                 <id provider="uniprot">4155</id>
                                 <code>MIMGU</code>
@@ -3353,6 +3514,7 @@
                           </clade>
                         </clade>
                         <clade>
+                          <name>AQUCA</name>
                           <taxonomy>
                             <id provider="uniprot">218851</id>
                             <code>AQUCA</code>
@@ -3389,6 +3551,7 @@
                               <rank>tribe</rank>
                             </taxonomy>
                             <clade>
+                              <name>SORBI</name>
                               <taxonomy>
                                 <id provider="uniprot">4558</id>
                                 <code>SORBI</code>
@@ -3399,6 +3562,7 @@
                               </taxonomy>
                             </clade>
                             <clade>
+                              <name>MAIZE</name>
                               <taxonomy>
                                 <id provider="uniprot">4577</id>
                                 <code>MAIZE</code>
@@ -3425,6 +3589,7 @@
                               </taxonomy>
                             </clade>
                             <clade>
+                              <name>SETIT</name>
                               <taxonomy>
                                 <id provider="uniprot">4555</id>
                                 <code>SETIT</code>
@@ -3449,6 +3614,7 @@
                               <rank>genus</rank>
                             </taxonomy>
                             <clade>
+                              <name>ORYSA</name>
                               <taxonomy>
                                 <id provider="uniprot">4530</id>
                                 <code>ORYSA</code>
@@ -3458,6 +3624,7 @@
                               </taxonomy>
                             </clade>
                             <clade>
+                              <name>ORYSJ</name>
                               <taxonomy>
                                 <id provider="uniprot">39947</id>
                                 <code>ORYSJ</code>
@@ -3467,6 +3634,7 @@
                             </clade>
                           </clade>
                           <clade>
+                            <name>BRADI</name>
                             <taxonomy>
                               <id provider="uniprot">15368</id>
                               <code>BRADI</code>
@@ -3481,6 +3649,7 @@
                       </clade>
                     </clade>
                     <clade>
+                      <name>SELMO</name>
                       <taxonomy>
                         <id provider="uniprot">34167</id>
                         <code>SELMO</code>
@@ -3491,6 +3660,7 @@
                     </clade>
                   </clade>
                   <clade>
+                    <name>PHYPA</name>
                     <taxonomy>
                       <id provider="uniprot">145481</id>
                       <code>PHYPA</code>
@@ -3519,6 +3689,7 @@
                         <rank>genus</rank>
                       </taxonomy>
                       <clade>
+                        <name>OSTLU</name>
                         <taxonomy>
                           <id provider="uniprot">436017</id>
                           <code>OSTLU</code>
@@ -3534,6 +3705,7 @@
                         </taxonomy>
                       </clade>
                       <clade>
+                        <name>OSTTA</name>
                         <taxonomy>
                           <id provider="uniprot">70448</id>
                           <code>OSTTA</code>
@@ -3549,6 +3721,7 @@
                         <rank>genus</rank>
                       </taxonomy>
                       <clade>
+                        <name>MICPC</name>
                         <taxonomy>
                           <id provider="uniprot">564608</id>
                           <code>MICPC</code>
@@ -3557,6 +3730,7 @@
                         </taxonomy>
                       </clade>
                       <clade>
+                        <name>MICSR</name>
                         <taxonomy>
                           <id provider="uniprot">296587</id>
                           <code>MICSR</code>
@@ -3611,6 +3785,7 @@
                         <rank>order</rank>
                       </taxonomy>
                       <clade>
+                        <name>CHLRE</name>
                         <taxonomy>
                           <id provider="uniprot">3055</id>
                           <code>CHLRE</code>
@@ -3620,6 +3795,7 @@
                         </taxonomy>
                       </clade>
                       <clade>
+                        <name>VOLCA</name>
                         <taxonomy>
                           <id provider="uniprot">3067</id>
                           <code>VOLCA</code>
@@ -3633,6 +3809,7 @@
                 </clade>
               </clade>
               <clade>
+                <name>CYAME</name>
                 <taxonomy>
                   <id provider="uniprot">45157</id>
                   <code>CYAME</code>
@@ -3674,6 +3851,7 @@
                           <rank>genus</rank>
                         </taxonomy>
                         <clade>
+                          <name>PLACH</name>
                           <taxonomy>
                             <id provider="uniprot">5825</id>
                             <code>PLACH</code>
@@ -3682,6 +3860,7 @@
                           </taxonomy>
                         </clade>
                         <clade>
+                          <name>PLAFA</name>
                           <taxonomy>
                             <id provider="uniprot">5833</id>
                             <code>PLAFA</code>
@@ -3690,6 +3869,7 @@
                           </taxonomy>
                         </clade>
                         <clade>
+                          <name>PLAYO</name>
                           <taxonomy>
                             <id provider="uniprot">73239</id>
                             <code>PLAYO</code>
@@ -3706,6 +3886,7 @@
                           <rank>genus</rank>
                         </taxonomy>
                         <clade>
+                          <name>THEAN</name>
                           <taxonomy>
                             <id provider="uniprot">5874</id>
                             <code>THEAN</code>
@@ -3714,6 +3895,7 @@
                           </taxonomy>
                         </clade>
                         <clade>
+                          <name>THEPA</name>
                           <taxonomy>
                             <id provider="uniprot">5875</id>
                             <code>THEPA</code>
@@ -3736,6 +3918,7 @@
                           <rank>genus</rank>
                         </taxonomy>
                         <clade>
+                          <name>CRYHO</name>
                           <taxonomy>
                             <id provider="uniprot">237895</id>
                             <code>CRYHO</code>
@@ -3744,6 +3927,7 @@
                           </taxonomy>
                         </clade>
                         <clade>
+                          <name>CRYPV</name>
                           <taxonomy>
                             <id provider="uniprot">5807</id>
                             <code>CRYPV</code>
@@ -3754,13 +3938,6 @@
                       </clade>
                       <clade>
                         <name>Eimeria &amp; Toxoplasma</name>
-                        <distribution>
-                          <point geodetic_datum="?" alt_unit="?">
-                            <lat>0</lat>
-                            <long>0</long>
-                            <alt>0</alt>
-                          </point>
-                        </distribution>
                         <reference doi="10.1093/molbev/msn213">
                           <desc>The Apicomplexan Whole-Genome Phylogeny: An Analysis of Incongruence among Gene Trees</desc>
                         </reference>
@@ -3777,6 +3954,7 @@
                           </taxonomy>
                         </clade>
                         <clade>
+                          <name>TOXGO</name>
                           <taxonomy>
                             <id provider="uniprot">5811</id>
                             <code>TOXGO</code>
@@ -3794,6 +3972,7 @@
                       <rank>class</rank>
                     </taxonomy>
                     <clade>
+                      <name>PARTE</name>
                       <taxonomy>
                         <id provider="uniprot">5888</id>
                         <code>PARTE</code>
@@ -3802,6 +3981,7 @@
                       </taxonomy>
                     </clade>
                     <clade>
+                      <name>TETTH</name>
                       <taxonomy>
                         <id provider="uniprot">5911</id>
                         <code>TETTH</code>
@@ -3833,6 +4013,7 @@
                           <scientific_name>Bacillariophycidae</scientific_name>
                         </taxonomy>
                         <clade>
+                          <name>FRACY</name>
                           <taxonomy>
                             <id provider="eol">911694</id>
                             <code>FRACY</code>
@@ -3843,6 +4024,7 @@
                           </taxonomy>
                         </clade>
                         <clade>
+                          <name>PHATR</name>
                           <taxonomy>
                             <id provider="eol">912693</id>
                             <code>PHATR</code>
@@ -3853,6 +4035,7 @@
                         </clade>
                       </clade>
                       <clade>
+                        <name>THAPS</name>
                         <taxonomy>
                           <id provider="eol">916868</id>
                           <code>THAPS</code>
@@ -3865,6 +4048,7 @@
                       </clade>
                     </clade>
                     <clade>
+                      <name>AURAN</name>
                       <taxonomy>
                         <id provider="eol">912461</id>
                         <code>AURAN</code>
@@ -3881,6 +4065,7 @@
                       <rank>genus</rank>
                     </taxonomy>
                     <clade>
+                      <name>PHYIN</name>
                       <taxonomy>
                         <id provider="uniprot">4787</id>
                         <code>PHYIN</code>
@@ -3890,6 +4075,7 @@
                       </taxonomy>
                     </clade>
                     <clade>
+                      <name>PHYRM</name>
                       <taxonomy>
                         <id provider="uniprot">164328</id>
                         <code>PHYRM</code>
@@ -3910,6 +4096,7 @@
                 </clade>
               </clade>
               <clade>
+                <name>EMIHU</name>
                 <taxonomy>
                   <id provider="uniprot">2903</id>
                   <code>EMIHU</code>
@@ -3932,6 +4119,7 @@
                   <rank>family</rank>
                 </taxonomy>
                 <clade>
+                  <name>LEIMA</name>
                   <taxonomy>
                     <id provider="uniprot">5664</id>
                     <code>LEIMA</code>
@@ -3940,6 +4128,7 @@
                   </taxonomy>
                 </clade>
                 <clade>
+                  <name>TRYBB</name>
                   <taxonomy>
                     <id provider="uniprot">5702</id>
                     <code>TRYBB</code>
@@ -3949,6 +4138,7 @@
                 </clade>
               </clade>
               <clade>
+                <name>NAEGR</name>
                 <taxonomy>
                   <id provider="uniprot">5762</id>
                   <code>NAEGR</code>
@@ -3961,6 +4151,7 @@
             <clade>
               <name>Metamonada</name>
               <clade>
+                <name>GIALA</name>
                 <taxonomy>
                   <id provider="uniprot">5741</id>
                   <code>GIALA</code>
@@ -3971,6 +4162,7 @@
                 </taxonomy>
               </clade>
               <clade>
+                <name>TRIVA</name>
                 <taxonomy>
                   <id provider="uniprot">5722</id>
                   <code>TRIVA</code>
@@ -4030,6 +4222,7 @@
                               <clade>
                                 <name>a_2</name>
                                 <clade>
+                                  <name>METAC</name>
                                   <taxonomy>
                                     <id provider="uniprot">2214</id>
                                     <code>METAC</code>
@@ -4038,6 +4231,7 @@
                                   </taxonomy>
                                 </clade>
                                 <clade>
+                                  <name>METBF</name>
                                   <taxonomy>
                                     <id provider="uniprot">269797</id>
                                     <code>METBF</code>
@@ -4046,6 +4240,7 @@
                                 </clade>
                               </clade>
                               <clade>
+                                <name>METMA</name>
                                 <taxonomy>
                                   <id provider="uniprot">2209</id>
                                   <code>METMA</code>
@@ -4056,6 +4251,7 @@
                               </clade>
                             </clade>
                             <clade>
+                              <name>METBU</name>
                               <taxonomy>
                                 <id provider="uniprot">259564</id>
                                 <code>METBU</code>
@@ -4073,6 +4269,7 @@
                             <clade>
                               <name>a_9</name>
                               <clade>
+                                <name>METB6</name>
                                 <taxonomy>
                                   <id provider="uniprot">456442</id>
                                   <code>METB6</code>
@@ -4080,6 +4277,7 @@
                                 </taxonomy>
                               </clade>
                               <clade>
+                                <name>METHU</name>
                                 <taxonomy>
                                   <id provider="uniprot">2203</id>
                                   <code>METHU</code>
@@ -4089,6 +4287,7 @@
                               </clade>
                             </clade>
                             <clade>
+                              <name>METMJ</name>
                               <taxonomy>
                                 <id provider="uniprot">368407</id>
                                 <code>METMJ</code>
@@ -4098,6 +4297,7 @@
                           </clade>
                         </clade>
                         <clade>
+                          <name>METLZ</name>
                           <taxonomy>
                             <id provider="uniprot">410358</id>
                             <code>METLZ</code>
@@ -4106,6 +4306,7 @@
                         </clade>
                       </clade>
                       <clade>
+                        <name>METTP</name>
                         <taxonomy>
                           <id provider="uniprot">349307</id>
                           <code>METTP</code>
@@ -4126,6 +4327,7 @@
                         <clade>
                           <name>a_19</name>
                           <clade>
+                            <name>HALMA</name>
                             <taxonomy>
                               <id provider="uniprot">2238</id>
                               <code>HALMA</code>
@@ -4135,6 +4337,7 @@
                             </taxonomy>
                           </clade>
                           <clade>
+                            <name>NATPH</name>
                             <taxonomy>
                               <id provider="uniprot">2257</id>
                               <code>NATPH</code>
@@ -4152,6 +4355,7 @@
                             <rank>genus</rank>
                           </taxonomy>
                           <clade>
+                            <name>HALS3</name>
                             <taxonomy>
                               <id provider="uniprot">478009</id>
                               <code>HALS3</code>
@@ -4159,6 +4363,7 @@
                             </taxonomy>
                           </clade>
                           <clade>
+                            <name>HALSP</name>
                             <taxonomy>
                               <id provider="uniprot">2243</id>
                               <code>HALSP</code>
@@ -4169,6 +4374,7 @@
                         </clade>
                       </clade>
                       <clade>
+                        <name>HALWD</name>
                         <taxonomy>
                           <id provider="uniprot">362976</id>
                           <code>HALWD</code>
@@ -4178,6 +4384,7 @@
                     </clade>
                   </clade>
                   <clade>
+                    <name>ARCFU</name>
                     <taxonomy>
                       <id provider="uniprot">2234</id>
                       <code>ARCFU</code>
@@ -4200,6 +4407,7 @@
                       <clade>
                         <name>a_31</name>
                         <clade>
+                          <name>METJA</name>
                           <taxonomy>
                             <id provider="uniprot">2190</id>
                             <code>METJA</code>
@@ -4209,6 +4417,7 @@
                           </taxonomy>
                         </clade>
                         <clade>
+                          <name>META3</name>
                           <taxonomy>
                             <id provider="uniprot">419665</id>
                             <code>META3</code>
@@ -4224,6 +4433,7 @@
                           <rank>genus</rank>
                         </taxonomy>
                         <clade>
+                          <name>METMP</name>
                           <taxonomy>
                             <id provider="uniprot">39152</id>
                             <code>METMP</code>
@@ -4233,6 +4443,7 @@
                           </taxonomy>
                         </clade>
                         <clade>
+                          <name>METVS</name>
                           <taxonomy>
                             <id provider="uniprot">406327</id>
                             <code>METVS</code>
@@ -4251,6 +4462,7 @@
                       <clade>
                         <name>a_38</name>
                         <clade>
+                          <name>METS3</name>
                           <taxonomy>
                             <id provider="uniprot">420247</id>
                             <code>METS3</code>
@@ -4258,6 +4470,7 @@
                           </taxonomy>
                         </clade>
                         <clade>
+                          <name>METST</name>
                           <taxonomy>
                             <id provider="uniprot">339860</id>
                             <code>METST</code>
@@ -4266,6 +4479,7 @@
                         </clade>
                       </clade>
                       <clade>
+                        <name>METTH</name>
                         <taxonomy>
                           <id provider="uniprot">187420</id>
                           <code>METTH</code>
@@ -4275,6 +4489,7 @@
                     </clade>
                   </clade>
                   <clade>
+                    <name>METKA</name>
                     <taxonomy>
                       <id provider="uniprot">2320</id>
                       <code>METKA</code>
@@ -4294,6 +4509,7 @@
                 <clade>
                   <name>a_47</name>
                   <clade>
+                    <name>PYRFU</name>
                     <taxonomy>
                       <id provider="uniprot">2261</id>
                       <code>PYRFU</code>
@@ -4318,6 +4534,7 @@
                     <rank>genus</rank>
                   </taxonomy>
                   <clade>
+                    <name>PYRAB</name>
                     <taxonomy>
                       <id provider="uniprot">29292</id>
                       <code>PYRAB</code>
@@ -4326,6 +4543,7 @@
                     </taxonomy>
                   </clade>
                   <clade>
+                    <name>PYRHO</name>
                     <taxonomy>
                       <id provider="uniprot">53953</id>
                       <code>PYRHO</code>
@@ -4339,6 +4557,7 @@
             <clade>
               <name>a_55</name>
               <clade>
+                <name>NANEQ</name>
                 <taxonomy>
                   <id provider="uniprot">228908</id>
                   <code>NANEQ</code>
@@ -4368,6 +4587,7 @@
                 <rank>genus</rank>
               </taxonomy>
               <clade>
+                <name>THEAC</name>
                 <taxonomy>
                   <id provider="uniprot">273075</id>
                   <code>THEAC</code>
@@ -4375,6 +4595,7 @@
                 </taxonomy>
               </clade>
               <clade>
+                <name>THEVO</name>
                 <taxonomy>
                   <id provider="uniprot">273116</id>
                   <code>THEVO</code>
@@ -4383,6 +4604,7 @@
               </clade>
             </clade>
             <clade>
+              <name>PICTO</name>
               <taxonomy>
                 <id provider="uniprot">263820</id>
                 <code>PICTO</code>
@@ -4422,6 +4644,7 @@
                       <clade>
                         <name>a_65</name>
                         <clade>
+                          <name>PYRAR</name>
                           <taxonomy>
                             <id provider="uniprot">340102</id>
                             <code>PYRAR</code>
@@ -4429,6 +4652,7 @@
                           </taxonomy>
                         </clade>
                         <clade>
+                          <name>PYRCJ</name>
                           <taxonomy>
                             <id provider="uniprot">410359</id>
                             <code>PYRCJ</code>
@@ -4437,6 +4661,7 @@
                         </clade>
                       </clade>
                       <clade>
+                        <name>PYRAE</name>
                         <taxonomy>
                           <id provider="uniprot">13773</id>
                           <code>PYRAE</code>
@@ -4448,6 +4673,7 @@
                     <clade>
                       <name>a_70</name>
                       <clade>
+                        <name>PYRIL</name>
                         <taxonomy>
                           <id provider="uniprot">384616</id>
                           <code>PYRIL</code>
@@ -4455,6 +4681,7 @@
                         </taxonomy>
                       </clade>
                       <clade>
+                        <name>THENV</name>
                         <taxonomy>
                           <id provider="uniprot">444157</id>
                           <code>THENV</code>
@@ -4488,6 +4715,7 @@
                     <clade>
                       <name>a_76</name>
                       <clade>
+                        <name>SULAC</name>
                         <taxonomy>
                           <id provider="uniprot">2285</id>
                           <code>SULAC</code>
@@ -4496,6 +4724,7 @@
                         </taxonomy>
                       </clade>
                       <clade>
+                        <name>SULTO</name>
                         <taxonomy>
                           <id provider="uniprot">273063</id>
                           <code>SULTO</code>
@@ -4504,6 +4733,7 @@
                       </clade>
                     </clade>
                     <clade>
+                      <name>SULSO</name>
                       <taxonomy>
                         <id provider="uniprot">2287</id>
                         <code>SULSO</code>
@@ -4513,6 +4743,7 @@
                     </clade>
                   </clade>
                   <clade>
+                    <name>METS5</name>
                     <taxonomy>
                       <id provider="uniprot">399549</id>
                       <code>METS5</code>
@@ -4522,6 +4753,7 @@
                 </clade>
               </clade>
               <clade>
+                <name>AERPE</name>
                 <taxonomy>
                   <id provider="uniprot">56636</id>
                   <code>AERPE</code>
@@ -4537,6 +4769,7 @@
                 <clade>
                   <name>a_86</name>
                   <clade>
+                    <name>STAMF</name>
                     <taxonomy>
                       <id provider="uniprot">399550</id>
                       <code>STAMF</code>
@@ -4544,6 +4777,7 @@
                     </taxonomy>
                   </clade>
                   <clade>
+                    <name>THEPD</name>
                     <taxonomy>
                       <id provider="uniprot">368408</id>
                       <code>THEPD</code>
@@ -4552,6 +4786,7 @@
                   </clade>
                 </clade>
                 <clade>
+                  <name>HYPBU</name>
                   <taxonomy>
                     <id provider="uniprot">415426</id>
                     <code>HYPBU</code>
@@ -4560,6 +4795,7 @@
                 </clade>
               </clade>
               <clade>
+                <name>IGNH4</name>
                 <taxonomy>
                   <id provider="uniprot">453591</id>
                   <code>IGNH4</code>
@@ -4640,6 +4876,7 @@
                                             <rank>genus</rank>
                                           </taxonomy>
                                           <clade>
+                                            <name>ECOLI</name>
                                             <taxonomy>
                                               <id provider="uniprot">83333</id>
                                               <code>ECOLI</code>
@@ -4647,6 +4884,7 @@
                                             </taxonomy>
                                           </clade>
                                           <clade>
+                                            <name>ECO57</name>
                                             <taxonomy>
                                               <id provider="uniprot">83334</id>
                                               <code>ECO57</code>
@@ -4655,6 +4893,7 @@
                                           </clade>
                                         </clade>
                                         <clade>
+                                          <name>SHIFL</name>
                                           <taxonomy>
                                             <id provider="uniprot">623</id>
                                             <code>SHIFL</code>
@@ -4664,6 +4903,7 @@
                                         </clade>
                                       </clade>
                                       <clade>
+                                        <name>SALTY</name>
                                         <taxonomy>
                                           <id provider="uniprot">90371</id>
                                           <code>SALTY</code>
@@ -4672,6 +4912,7 @@
                                       </clade>
                                     </clade>
                                     <clade>
+                                      <name>YERPE</name>
                                       <taxonomy>
                                         <id provider="uniprot">632</id>
                                         <code>YERPE</code>
@@ -4681,6 +4922,7 @@
                                     </clade>
                                   </clade>
                                   <clade>
+                                    <name>PHOLU</name>
                                     <taxonomy>
                                       <id provider="uniprot">29488</id>
                                       <code>PHOLU</code>
@@ -4700,6 +4942,7 @@
                                       <rank>family</rank>
                                     </taxonomy>
                                     <clade>
+                                      <name>PHOPR</name>
                                       <taxonomy>
                                         <id provider="uniprot">74109</id>
                                         <code>PHOPR</code>
@@ -4709,6 +4952,7 @@
                                       </taxonomy>
                                     </clade>
                                     <clade>
+                                      <name>VIBCH</name>
                                       <taxonomy>
                                         <id provider="uniprot">666</id>
                                         <code>VIBCH</code>
@@ -4718,6 +4962,7 @@
                                     </clade>
                                   </clade>
                                   <clade>
+                                    <name>SHEDO</name>
                                     <taxonomy>
                                       <id provider="uniprot">318161</id>
                                       <code>SHEDO</code>
@@ -4738,6 +4983,7 @@
                                   <clade>
                                     <name>b_19</name>
                                     <clade>
+                                      <name>PSEF5</name>
                                       <taxonomy>
                                         <id provider="uniprot">220664</id>
                                         <code>PSEF5</code>
@@ -4745,6 +4991,7 @@
                                       </taxonomy>
                                     </clade>
                                     <clade>
+                                      <name>PSEPF</name>
                                       <taxonomy>
                                         <id provider="uniprot">205922</id>
                                         <code>PSEPF</code>
@@ -4753,6 +5000,7 @@
                                     </clade>
                                   </clade>
                                   <clade>
+                                    <name>PSEAE</name>
                                     <taxonomy>
                                       <id provider="uniprot">287</id>
                                       <code>PSEAE</code>
@@ -4762,6 +5010,7 @@
                                   </clade>
                                 </clade>
                                 <clade>
+                                  <name>CHRSD</name>
                                   <taxonomy>
                                     <id provider="uniprot">290398</id>
                                     <code>CHRSD</code>
@@ -4778,6 +5027,7 @@
                                 <rank>class</rank>
                               </taxonomy>
                               <clade>
+                                <name>DECAR</name>
                                 <taxonomy>
                                   <id provider="uniprot">159087</id>
                                   <code>DECAR</code>
@@ -4785,6 +5035,7 @@
                                 </taxonomy>
                               </clade>
                               <clade>
+                                <name>RALME</name>
                                 <taxonomy>
                                   <id provider="uniprot">266264</id>
                                   <code>RALME</code>
@@ -4812,6 +5063,7 @@
                                     <rank>family</rank>
                                   </taxonomy>
                                   <clade>
+                                    <name>NITEU</name>
                                     <taxonomy>
                                       <id provider="uniprot">915</id>
                                       <code>NITEU</code>
@@ -4820,6 +5072,7 @@
                                     </taxonomy>
                                   </clade>
                                   <clade>
+                                    <name>NITMU</name>
                                     <taxonomy>
                                       <id provider="uniprot">323848</id>
                                       <code>NITMU</code>
@@ -4828,6 +5081,7 @@
                                   </clade>
                                 </clade>
                                 <clade>
+                                  <name>THIDE</name>
                                   <taxonomy>
                                     <id provider="uniprot">36861</id>
                                     <code>THIDE</code>
@@ -4852,6 +5106,7 @@
                                     <rank>family</rank>
                                   </taxonomy>
                                   <clade>
+                                    <name>ALHEH</name>
                                     <taxonomy>
                                       <id provider="uniprot">187272</id>
                                       <code>ALHEH</code>
@@ -4859,6 +5114,7 @@
                                     </taxonomy>
                                   </clade>
                                   <clade>
+                                    <name>HALHL</name>
                                     <taxonomy>
                                       <id provider="uniprot">349124</id>
                                       <code>HALHL</code>
@@ -4868,6 +5124,7 @@
                                   </clade>
                                 </clade>
                                 <clade>
+                                  <name>NITOC</name>
                                   <taxonomy>
                                     <id provider="uniprot">323261</id>
                                     <code>NITOC</code>
@@ -4877,6 +5134,7 @@
                               </clade>
                             </clade>
                             <clade>
+                              <name>THICR</name>
                               <taxonomy>
                                 <id provider="uniprot">317025</id>
                                 <code>THICR</code>
@@ -4895,6 +5153,7 @@
                           <clade>
                             <name>b_47</name>
                             <clade>
+                              <name>IDILO</name>
                               <taxonomy>
                                 <id provider="uniprot">135577</id>
                                 <code>IDILO</code>
@@ -4903,6 +5162,7 @@
                               </taxonomy>
                             </clade>
                             <clade>
+                              <name>LEGPN</name>
                               <taxonomy>
                                 <id provider="uniprot">446</id>
                                 <code>LEGPN</code>
@@ -4919,6 +5179,7 @@
                               <rank>family</rank>
                             </taxonomy>
                             <clade>
+                              <name>XANAC</name>
                               <taxonomy>
                                 <id provider="uniprot">92829</id>
                                 <code>XANAC</code>
@@ -4927,6 +5188,7 @@
                               </taxonomy>
                             </clade>
                             <clade>
+                              <name>XYLFT</name>
                               <taxonomy>
                                 <id provider="uniprot">183190</id>
                                 <code>XYLFT</code>
@@ -4961,6 +5223,7 @@
                                   <scientific_name>Rhizobium/Agrobacterium group</scientific_name>
                                 </taxonomy>
                                 <clade>
+                                  <name>AGRT5</name>
                                   <taxonomy>
                                     <id provider="uniprot">176299</id>
                                     <code>AGRT5</code>
@@ -4968,6 +5231,7 @@
                                   </taxonomy>
                                 </clade>
                                 <clade>
+                                  <name>RHIEC</name>
                                   <taxonomy>
                                     <id provider="uniprot">347834</id>
                                     <code>RHIEC</code>
@@ -4983,6 +5247,7 @@
                                   <rank>family</rank>
                                 </taxonomy>
                                 <clade>
+                                  <name>BRAJA</name>
                                   <taxonomy>
                                     <id provider="uniprot">375</id>
                                     <code>BRAJA</code>
@@ -4991,6 +5256,7 @@
                                   </taxonomy>
                                 </clade>
                                 <clade>
+                                  <name>RHOPT</name>
                                   <taxonomy>
                                     <id provider="uniprot">395960</id>
                                     <code>RHOPT</code>
@@ -5007,6 +5273,7 @@
                                 <rank>family</rank>
                               </taxonomy>
                               <clade>
+                                <name>RHOS1</name>
                                 <taxonomy>
                                   <id provider="uniprot">349101</id>
                                   <code>RHOS1</code>
@@ -5014,6 +5281,7 @@
                                 </taxonomy>
                               </clade>
                               <clade>
+                                <name>ROSDO</name>
                                 <taxonomy>
                                   <id provider="uniprot">375451</id>
                                   <code>ROSDO</code>
@@ -5025,6 +5293,7 @@
                             </clade>
                           </clade>
                           <clade>
+                            <name>CAUCR</name>
                             <taxonomy>
                               <id provider="uniprot">155892</id>
                               <code>CAUCR</code>
@@ -5042,6 +5311,7 @@
                             <rank>order</rank>
                           </taxonomy>
                           <clade>
+                            <name>ACICY</name>
                             <taxonomy>
                               <id provider="uniprot">524</id>
                               <code>ACICY</code>
@@ -5050,6 +5320,7 @@
                             </taxonomy>
                           </clade>
                           <clade>
+                            <name>RHORU</name>
                             <taxonomy>
                               <id provider="uniprot">1085</id>
                               <code>RHORU</code>
@@ -5077,6 +5348,7 @@
                             <rank>family</rank>
                           </taxonomy>
                           <clade>
+                            <name>HAEIN</name>
                             <taxonomy>
                               <id provider="uniprot">727</id>
                               <code>HAEIN</code>
@@ -5085,6 +5357,7 @@
                             </taxonomy>
                           </clade>
                           <clade>
+                            <name>PASMU</name>
                             <taxonomy>
                               <id provider="uniprot">747</id>
                               <code>PASMU</code>
@@ -5094,6 +5367,7 @@
                           </clade>
                         </clade>
                         <clade>
+                          <name>NEIME</name>
                           <taxonomy>
                             <id provider="uniprot">487</id>
                             <code>NEIME</code>
@@ -5103,6 +5377,7 @@
                         </clade>
                       </clade>
                       <clade>
+                        <name>ACIFE</name>
                         <taxonomy>
                           <id provider="uniprot">905</id>
                           <code>ACIFE</code>
@@ -5126,6 +5401,7 @@
                         <clade>
                           <name>b_83</name>
                           <clade>
+                            <name>DESPS</name>
                             <taxonomy>
                               <id provider="uniprot">84980</id>
                               <code>DESPS</code>
@@ -5134,6 +5410,7 @@
                             </taxonomy>
                           </clade>
                           <clade>
+                            <name>DESDE</name>
                             <taxonomy>
                               <id provider="uniprot">876</id>
                               <code>DESDE</code>
@@ -5143,6 +5420,7 @@
                           </clade>
                         </clade>
                         <clade>
+                          <name>SYNAS</name>
                           <taxonomy>
                             <id provider="uniprot">56780</id>
                             <code>SYNAS</code>
@@ -5158,6 +5436,7 @@
                           <rank>genus</rank>
                         </taxonomy>
                         <clade>
+                          <name>GEOME</name>
                           <taxonomy>
                             <id provider="uniprot">28232</id>
                             <code>GEOME</code>
@@ -5166,6 +5445,7 @@
                           </taxonomy>
                         </clade>
                         <clade>
+                          <name>GEOSL</name>
                           <taxonomy>
                             <id provider="uniprot">35554</id>
                             <code>GEOSL</code>
@@ -5187,6 +5467,7 @@
                             <rank>family</rank>
                           </taxonomy>
                           <clade>
+                            <name>ANADE</name>
                             <taxonomy>
                               <id provider="uniprot">290397</id>
                               <code>ANADE</code>
@@ -5194,6 +5475,7 @@
                             </taxonomy>
                           </clade>
                           <clade>
+                            <name>MYXXA</name>
                             <taxonomy>
                               <id provider="uniprot">34</id>
                               <code>MYXXA</code>
@@ -5210,6 +5492,7 @@
                             <rank>phylum</rank>
                           </taxonomy>
                           <clade>
+                            <name>ACIBL</name>
                             <taxonomy>
                               <id provider="uniprot">204669</id>
                               <code>ACIBL</code>
@@ -5217,6 +5500,7 @@
                             </taxonomy>
                           </clade>
                           <clade>
+                            <name>SOLUS</name>
                             <taxonomy>
                               <id provider="uniprot">332163</id>
                               <code>SOLUS</code>
@@ -5227,6 +5511,7 @@
                         </clade>
                       </clade>
                       <clade>
+                        <name>RHOBA</name>
                         <taxonomy>
                           <id provider="uniprot">265606</id>
                           <code>RHOBA</code>
@@ -5270,6 +5555,7 @@
                                 <rank>family</rank>
                               </taxonomy>
                               <clade>
+                                <name>CHLAU</name>
                                 <taxonomy>
                                   <id provider="uniprot">1108</id>
                                   <code>CHLAU</code>
@@ -5287,6 +5573,7 @@
                               </clade>
                             </clade>
                             <clade>
+                              <name>HERAU</name>
                               <taxonomy>
                                 <id provider="uniprot">65</id>
                                 <code>HERAU</code>
@@ -5320,6 +5607,7 @@
                             <clade>
                               <name>b_115</name>
                               <clade>
+                                <name>KINRD</name>
                                 <taxonomy>
                                   <id provider="uniprot">266940</id>
                                   <code>KINRD</code>
@@ -5327,6 +5615,7 @@
                                 </taxonomy>
                               </clade>
                               <clade>
+                                <name>KOCRD</name>
                                 <taxonomy>
                                   <id provider="uniprot">378753</id>
                                   <code>KOCRD</code>
@@ -5334,6 +5623,7 @@
                                 </taxonomy>
                               </clade>
                               <clade>
+                                <name>STRCO</name>
                                 <taxonomy>
                                   <id provider="uniprot">1902</id>
                                   <code>STRCO</code>
@@ -5342,6 +5632,7 @@
                                 </taxonomy>
                               </clade>
                               <clade>
+                                <name>THEFY</name>
                                 <taxonomy>
                                   <id provider="uniprot">269800</id>
                                   <code>THEFY</code>
@@ -5371,6 +5662,7 @@
                                   <rank>genus</rank>
                                 </taxonomy>
                                 <clade>
+                                  <name>MYCLE</name>
                                   <taxonomy>
                                     <id provider="uniprot">1769</id>
                                     <code>MYCLE</code>
@@ -5379,6 +5671,7 @@
                                   </taxonomy>
                                 </clade>
                                 <clade>
+                                  <name>MYCTU</name>
                                   <taxonomy>
                                     <id provider="uniprot">1773</id>
                                     <code>MYCTU</code>
@@ -5388,6 +5681,7 @@
                                 </clade>
                               </clade>
                               <clade>
+                                <name>CORJK</name>
                                 <taxonomy>
                                   <id provider="uniprot">306537</id>
                                   <code>CORJK</code>
@@ -5405,6 +5699,7 @@
                             </clade>
                           </clade>
                           <clade>
+                            <name>RUBXD</name>
                             <taxonomy>
                               <id provider="uniprot">266117</id>
                               <code>RUBXD</code>
@@ -5428,6 +5723,7 @@
                             <rank>genus</rank>
                           </taxonomy>
                           <clade>
+                            <name>DEIGD</name>
                             <taxonomy>
                               <id provider="uniprot">319795</id>
                               <code>DEIGD</code>
@@ -5435,6 +5731,7 @@
                             </taxonomy>
                           </clade>
                           <clade>
+                            <name>DEIRA</name>
                             <taxonomy>
                               <id provider="uniprot">1299</id>
                               <code>DEIRA</code>
@@ -5444,6 +5741,7 @@
                           </clade>
                         </clade>
                         <clade>
+                          <name>THETH</name>
                           <taxonomy>
                             <id provider="uniprot">274</id>
                             <code>THETH</code>
@@ -5480,6 +5778,7 @@
                                   <clade>
                                     <name>b_136</name>
                                     <clade>
+                                      <name>ANAVA</name>
                                       <taxonomy>
                                         <id provider="uniprot">1172</id>
                                         <code>ANAVA</code>
@@ -5488,6 +5787,7 @@
                                       </taxonomy>
                                     </clade>
                                     <clade>
+                                      <name>NOSS7</name>
                                       <taxonomy>
                                         <id provider="uniprot">28072</id>
                                         <code>NOSS7</code>
@@ -5497,6 +5797,7 @@
                                     </clade>
                                   </clade>
                                   <clade>
+                                    <name>NOSP7</name>
                                     <taxonomy>
                                       <id provider="uniprot">63737</id>
                                       <code>NOSP7</code>
@@ -5505,6 +5806,7 @@
                                   </clade>
                                 </clade>
                                 <clade>
+                                  <name>ACAMR</name>
                                   <taxonomy>
                                     <id provider="uniprot">155978</id>
                                     <code>ACAMR</code>
@@ -5514,6 +5816,7 @@
                                 </clade>
                               </clade>
                               <clade>
+                                <name>MICAN</name>
                                 <taxonomy>
                                   <id provider="uniprot">449447</id>
                                   <code>MICAN</code>
@@ -5522,6 +5825,7 @@
                               </clade>
                             </clade>
                             <clade>
+                              <name>TRIER</name>
                               <taxonomy>
                                 <id provider="uniprot">1206</id>
                                 <code>TRIER</code>
@@ -5538,6 +5842,7 @@
                               <rank>order</rank>
                             </taxonomy>
                             <clade>
+                              <name>SYNEL</name>
                               <taxonomy>
                                 <id provider="uniprot">32046</id>
                                 <code>SYNEL</code>
@@ -5546,6 +5851,7 @@
                               </taxonomy>
                             </clade>
                             <clade>
+                              <name>SYNY3</name>
                               <taxonomy>
                                 <id provider="uniprot">1148</id>
                                 <code>SYNY3</code>
@@ -5556,6 +5862,7 @@
                           </clade>
                         </clade>
                         <clade>
+                          <name>GLOVI</name>
                           <taxonomy>
                             <id provider="uniprot">33072</id>
                             <code>GLOVI</code>
@@ -5576,6 +5883,7 @@
                           <clade>
                             <name>b_157</name>
                             <clade>
+                              <name>PROMA</name>
                               <taxonomy>
                                 <id provider="uniprot">1219</id>
                                 <code>PROMA</code>
@@ -5584,6 +5892,7 @@
                               </taxonomy>
                             </clade>
                             <clade>
+                              <name>PROMP</name>
                               <taxonomy>
                                 <id provider="uniprot">59919</id>
                                 <code>PROMP</code>
@@ -5592,6 +5901,7 @@
                             </clade>
                           </clade>
                           <clade>
+                            <name>PROMM</name>
                             <taxonomy>
                               <id provider="uniprot">74547</id>
                               <code>PROMM</code>
@@ -5600,6 +5910,7 @@
                           </clade>
                         </clade>
                         <clade>
+                          <name>SYNS3</name>
                           <taxonomy>
                             <id provider="uniprot">64471</id>
                             <code>SYNS3</code>
@@ -5628,6 +5939,7 @@
                             <clade>
                               <name>b_166</name>
                               <clade>
+                                <name>CHLPB</name>
                                 <taxonomy>
                                   <id provider="uniprot">331678</id>
                                   <code>CHLPB</code>
@@ -5635,6 +5947,7 @@
                                 </taxonomy>
                               </clade>
                               <clade>
+                                <name>PROAE</name>
                                 <taxonomy>
                                   <id provider="uniprot">1102</id>
                                   <code>PROAE</code>
@@ -5650,6 +5963,7 @@
                                 <scientific_name>Chlorobium/Pelodictyon group</scientific_name>
                               </taxonomy>
                               <clade>
+                                <name>PELLU</name>
                                 <taxonomy>
                                   <id provider="uniprot">1100</id>
                                   <code>PELLU</code>
@@ -5658,6 +5972,7 @@
                                 </taxonomy>
                               </clade>
                               <clade>
+                                <name>PROVI</name>
                                 <taxonomy>
                                   <id provider="uniprot">290318</id>
                                   <code>PROVI</code>
@@ -5678,6 +5993,7 @@
                                 <rank>genus</rank>
                               </taxonomy>
                               <clade>
+                                <name>CHLP8</name>
                                 <taxonomy>
                                   <id provider="uniprot">517417</id>
                                   <code>CHLP8</code>
@@ -5686,6 +6002,7 @@
                                 </taxonomy>
                               </clade>
                               <clade>
+                                <name>CHLTE</name>
                                 <taxonomy>
                                   <id provider="uniprot">1097</id>
                                   <code>CHLTE</code>
@@ -5695,6 +6012,7 @@
                               </clade>
                             </clade>
                             <clade>
+                              <name>CHLCH</name>
                               <taxonomy>
                                 <id provider="uniprot">340177</id>
                                 <code>CHLCH</code>
@@ -5704,6 +6022,7 @@
                           </clade>
                         </clade>
                         <clade>
+                          <name>CHLTA</name>
                           <taxonomy>
                             <id provider="uniprot">315277</id>
                             <code>CHLTA</code>
@@ -5728,6 +6047,7 @@
                               <rank>family</rank>
                             </taxonomy>
                             <clade>
+                              <name>FLAJO</name>
                               <taxonomy>
                                 <id provider="uniprot">986</id>
                                 <code>FLAJO</code>
@@ -5737,6 +6057,7 @@
                               </taxonomy>
                             </clade>
                             <clade>
+                              <name>GRAFK</name>
                               <taxonomy>
                                 <id provider="uniprot">411154</id>
                                 <code>GRAFK</code>
@@ -5745,6 +6066,7 @@
                             </clade>
                           </clade>
                           <clade>
+                            <name>CYTH3</name>
                             <taxonomy>
                               <id provider="uniprot">269798</id>
                               <code>CYTH3</code>
@@ -5767,6 +6089,7 @@
                               <rank>genus</rank>
                             </taxonomy>
                             <clade>
+                              <name>BACFR</name>
                               <taxonomy>
                                 <id provider="uniprot">817</id>
                                 <code>BACFR</code>
@@ -5775,6 +6098,7 @@
                               </taxonomy>
                             </clade>
                             <clade>
+                              <name>BACTN</name>
                               <taxonomy>
                                 <id provider="uniprot">818</id>
                                 <code>BACTN</code>
@@ -5784,6 +6108,7 @@
                             </clade>
                           </clade>
                           <clade>
+                            <name>PORGI</name>
                             <taxonomy>
                               <id provider="uniprot">837</id>
                               <code>PORGI</code>
@@ -5796,6 +6121,7 @@
                       </clade>
                     </clade>
                     <clade>
+                      <name>SALRD</name>
                       <taxonomy>
                         <id provider="uniprot">309807</id>
                         <code>SALRD</code>
@@ -5813,6 +6139,7 @@
                     <scientific_name>Verrucomicrobia</scientific_name>
                   </taxonomy>
                   <clade>
+                    <name>AKKM8</name>
                     <taxonomy>
                       <id provider="uniprot">349741</id>
                       <code>AKKM8</code>
@@ -5820,6 +6147,7 @@
                     </taxonomy>
                   </clade>
                   <clade>
+                    <name>METI4</name>
                     <taxonomy>
                       <id provider="uniprot">481448</id>
                       <code>METI4</code>
@@ -5829,6 +6157,7 @@
                   </clade>
                 </clade>
                 <clade>
+                  <name>LEPIC</name>
                   <taxonomy>
                     <id provider="uniprot">44275</id>
                     <code>LEPIC</code>
@@ -5872,6 +6201,7 @@
                             <scientific_name>Bacillus cereus group</scientific_name>
                           </taxonomy>
                           <clade>
+                            <name>BACAN</name>
                             <taxonomy>
                               <id provider="uniprot">1392</id>
                               <code>BACAN</code>
@@ -5900,6 +6230,7 @@
                       <clade>
                         <name>b_206</name>
                         <clade>
+                          <name>BACHD</name>
                           <taxonomy>
                             <id provider="uniprot">86665</id>
                             <code>BACHD</code>
@@ -5908,6 +6239,7 @@
                           </taxonomy>
                         </clade>
                         <clade>
+                          <name>GEOKA</name>
                           <taxonomy>
                             <id provider="uniprot">1462</id>
                             <code>GEOKA</code>
@@ -5920,6 +6252,7 @@
                     <clade>
                       <name>b_210</name>
                       <clade>
+                        <name>LISMO</name>
                         <taxonomy>
                           <id provider="uniprot">1639</id>
                           <code>LISMO</code>
@@ -5928,6 +6261,7 @@
                         </taxonomy>
                       </clade>
                       <clade>
+                        <name>STAAU</name>
                         <taxonomy>
                           <id provider="uniprot">1280</id>
                           <code>STAAU</code>
@@ -5938,6 +6272,7 @@
                     </clade>
                   </clade>
                   <clade>
+                    <name>CLOP1</name>
                     <taxonomy>
                       <id provider="uniprot">195103</id>
                       <code>CLOP1</code>
@@ -5962,6 +6297,7 @@
                         <rank>family</rank>
                       </taxonomy>
                       <clade>
+                        <name>CARHZ</name>
                         <taxonomy>
                           <id provider="uniprot">246194</id>
                           <code>CARHZ</code>
@@ -5969,6 +6305,7 @@
                         </taxonomy>
                       </clade>
                       <clade>
+                        <name>THETN</name>
                         <taxonomy>
                           <id provider="uniprot">119072</id>
                           <code>THETN</code>
@@ -5978,6 +6315,7 @@
                       </clade>
                     </clade>
                     <clade>
+                      <name>DESHA</name>
                       <taxonomy>
                         <id provider="uniprot">49338</id>
                         <code>DESHA</code>
@@ -5988,6 +6326,7 @@
                     </clade>
                   </clade>
                   <clade>
+                    <name>EUBR3</name>
                     <taxonomy>
                       <id provider="uniprot">515619</id>
                       <code>EUBR3</code>
@@ -6006,6 +6345,7 @@
                 <clade>
                   <name>b_222</name>
                   <clade>
+                    <name>FERNB</name>
                     <taxonomy>
                       <id provider="uniprot">381764</id>
                       <code>FERNB</code>
@@ -6013,6 +6353,7 @@
                     </taxonomy>
                   </clade>
                   <clade>
+                    <name>THELT</name>
                     <taxonomy>
                       <id provider="uniprot">416591</id>
                       <code>THELT</code>
@@ -6021,6 +6362,7 @@
                   </clade>
                 </clade>
                 <clade>
+                  <name>THEMA</name>
                   <taxonomy>
                     <id provider="uniprot">2336</id>
                     <code>THEMA</code>
@@ -6058,6 +6400,7 @@
                               <scientific_name>Mycoplasma</scientific_name>
                             </taxonomy>
                             <clade>
+                              <name>MYCGE</name>
                               <taxonomy>
                                 <id provider="uniprot">2097</id>
                                 <code>MYCGE</code>
@@ -6066,6 +6409,7 @@
                               </taxonomy>
                             </clade>
                             <clade>
+                              <name>MYCPN</name>
                               <taxonomy>
                                 <id provider="uniprot">2104</id>
                                 <code>MYCPN</code>
@@ -6075,6 +6419,7 @@
                             </clade>
                           </clade>
                           <clade>
+                            <name>MESFL</name>
                             <taxonomy>
                               <id provider="uniprot">2151</id>
                               <code>MESFL</code>
@@ -6085,6 +6430,7 @@
                           </clade>
                         </clade>
                         <clade>
+                          <name>UREPA</name>
                           <taxonomy>
                             <id provider="uniprot">134821</id>
                             <code>UREPA</code>
@@ -6102,6 +6448,7 @@
                           <rank>family</rank>
                         </taxonomy>
                         <clade>
+                          <name>BORBU</name>
                           <taxonomy>
                             <id provider="uniprot">139</id>
                             <code>BORBU</code>
@@ -6111,6 +6458,7 @@
                           </taxonomy>
                         </clade>
                         <clade>
+                          <name>TREPA</name>
                           <taxonomy>
                             <id provider="uniprot">160</id>
                             <code>TREPA</code>
@@ -6131,6 +6479,7 @@
                         <clade>
                           <name>b_240</name>
                           <clade>
+                            <name>CHLPN</name>
                             <taxonomy>
                               <id provider="uniprot">83558</id>
                               <code>CHLPN</code>
@@ -6140,6 +6489,7 @@
                             </taxonomy>
                           </clade>
                           <clade>
+                            <name>CHLFF</name>
                             <taxonomy>
                               <id provider="uniprot">264202</id>
                               <code>CHLFF</code>
@@ -6148,6 +6498,7 @@
                           </clade>
                         </clade>
                         <clade>
+                          <name>CHLMU</name>
                           <taxonomy>
                             <id provider="uniprot">83560</id>
                             <code>CHLMU</code>
@@ -6157,6 +6508,7 @@
                         </clade>
                       </clade>
                       <clade>
+                        <name>RICTY</name>
                         <taxonomy>
                           <id provider="uniprot">785</id>
                           <code>RICTY</code>
@@ -6214,6 +6566,7 @@
                   </clade>
                 </clade>
                 <clade>
+                  <name>FRATU</name>
                   <taxonomy>
                     <id provider="uniprot">263</id>
                     <code>FRATU</code>
@@ -6248,6 +6601,7 @@
                           <rank>genus</rank>
                         </taxonomy>
                         <clade>
+                          <name>STRPN</name>
                           <taxonomy>
                             <id provider="uniprot">1313</id>
                             <code>STRPN</code>
@@ -6256,6 +6610,7 @@
                           </taxonomy>
                         </clade>
                         <clade>
+                          <name>STRPY</name>
                           <taxonomy>
                             <id provider="uniprot">1314</id>
                             <code>STRPY</code>
@@ -6265,6 +6620,7 @@
                         </clade>
                       </clade>
                       <clade>
+                        <name>LACLA</name>
                         <taxonomy>
                           <id provider="uniprot">1360</id>
                           <code>LACLA</code>
@@ -6275,6 +6631,7 @@
                       </clade>
                     </clade>
                     <clade>
+                      <name>LACAC</name>
                       <taxonomy>
                         <id provider="uniprot">1579</id>
                         <code>LACAC</code>
@@ -6284,6 +6641,7 @@
                     </clade>
                   </clade>
                   <clade>
+                    <name>BIFLO</name>
                     <taxonomy>
                       <id provider="uniprot">216816</id>
                       <code>BIFLO</code>
@@ -6293,6 +6651,7 @@
                   </clade>
                 </clade>
                 <clade>
+                  <name>FUSNU</name>
                   <taxonomy>
                     <id provider="uniprot">851</id>
                     <code>FUSNU</code>
@@ -6310,6 +6669,7 @@
                 <rank>genus</rank>
               </taxonomy>
               <clade>
+                <name>DEHE1</name>
                 <taxonomy>
                   <id provider="uniprot">243164</id>
                   <code>DEHE1</code>
@@ -6317,6 +6677,7 @@
                 </taxonomy>
               </clade>
               <clade>
+                <name>DEHSB</name>
                 <taxonomy>
                   <id provider="uniprot">216389</id>
                   <code>DEHSB</code>
@@ -6337,6 +6698,7 @@
           <clade>
             <name>b_273</name>
             <clade>
+              <name>NITSB</name>
               <taxonomy>
                 <id provider="uniprot">387092</id>
                 <code>NITSB</code>
@@ -6345,6 +6707,7 @@
               </taxonomy>
             </clade>
             <clade>
+              <name>SULNB</name>
               <taxonomy>
                 <id provider="uniprot">387093</id>
                 <code>SULNB</code>
@@ -6361,6 +6724,7 @@
               <rank>order</rank>
             </taxonomy>
             <clade>
+              <name>CAMJE</name>
               <taxonomy>
                 <id provider="uniprot">197</id>
                 <code>CAMJE</code>
@@ -6369,6 +6733,7 @@
               </taxonomy>
             </clade>
             <clade>
+              <name>HELPH</name>
               <taxonomy>
                 <id provider="uniprot">357544</id>
                 <code>HELPH</code>
@@ -6379,6 +6744,7 @@
         </clade>
       </clade>
       <clade>
+        <name>AQUAE</name>
         <taxonomy>
           <id provider="uniprot">63363</id>
           <code>AQUAE</code>