Keep all public methods

diff --git a/build.xml b/build.xml
index 89342b4..fff571b 100755 (executable)
--- a/build.xml
+++ b/build.xml
@@ -38,7 +38,7 @@
         </fileset> -->
       </path>
 
-      <property name="JALVIEW_VERSION" value="2.03"/>
+      <property name="JALVIEW_VERSION" value="2.06"/>
       <property name="" value=""/>
       <property name="libDir" value="lib"/>
       <property name="resourceDir" value="resources"/>
@@ -181,18 +181,18 @@
       </copy>
 <!-- the default keystore details might need to be edited here -->
       <signjar
-      storepass="alignmentisfun"
-      keypass="alignmentisfun"
-      keystore="keys/.keystore"
+      storepass="password"
+      keypass="password"
+      keystore="C:/JalviewX/myKeys"
       alias="jalview"
       lazy="false"
       verbose="false"
       >
 
       <fileset dir="${packageDir}">
-        <include name="*.jar"/>
+        <include name="jalview.jar"/>
       </fileset>
-      </signjar>
+       </signjar>
       <taskdef classpathref="build.classpath" resource="com/roxes/tools/ant/taskdefs.properties"/>
 
       <!--    codebase="http://www.jalview.org/jalview/webstart" -->
@@ -315,7 +315,7 @@
     <mkdir dir="${outputDir}"/>
     <javac source="1.2" target="1.1" srcdir="${sourceDir}" destdir="${outputDir}"
        includes="jalview/analysis/**,jalview/appletgui/**,jalview/datamodel/**jalview/jbappletgui/**,jalview/math/**,jalview/schemes/**"
-       excludes="ext/**,MCview/**,org/**,vamsas/**"/>
+       excludes="ext/**,org/**,vamsas/**"/>
   </target>
 
   <target name="packageApplet" depends="compileApplet, buildPropertiesFile">
@@ -327,6 +327,7 @@
         <fileset dir="${outputDir}">
           <include name="com/**"/>
           <include name="jalview/**"/>
+          <include name="MCview/**"/>
           <include name=".build_properties"/>
           <include name="images/idwidth.gif"/>
         </fileset>
@@ -340,7 +341,9 @@
       -injars      in.jar
       -outjars     jalviewApplet.jar
       -keep public class jalview.bin.JalviewLite
-               { public static void main(java.lang.String[]);}
+               { public * ; }
+               
+               
     </proguard>
     <delete file="in.jar"/>
   </target>