{
this.viewName = viewName;
}
-
- /**
- * Answers the absolute column position (0..) (allowing for any hidden
- * columns) for the given x position in the viewport. The position is
- * restricted to the currently visible range, and to the width of the
- * alignment. This method is not applicable, and throws an exception if
- * called, if the view is in wrapped mode.<br>
- * Example
- * <ul>
- * <li>alignment width 157 (uniref50.fa example)</li>
- * <li>panel width 70</li>
- * <li>columns 0-59 and 69-119 hidden (111 columns)</li>
- * <li>leaves 56 columns visible, hidden columns left of and within the
- * alignment</li>
- * <li>getAbsoluteColumn(0) answers 60 (first visible column)</li>
- * <li>getAbsoluteColumn(-20) answers 60</li>
- * <li>getAbsoluteColumn(8*charWidth) answers 68 (just before hidden column
- * marker)</li>
- * <li>getAbsoluteColumn(9*charWidth) answers 120 (just after hidden column
- * marker)</li>
- * <li>getAbsoluteColumn(123456) answers 156 (last column of alignment)</li>
- * </ul>
- *
- * @param xPos
- * @return
- * @throw IllegalStateException
- */
- public int getAbsoluteColumn(int xPos)
- {
- if (getWrapAlignment())
- {
- throw new IllegalStateException("Not valid in wrapped mode");
- }
- int xCords = Math.max(0, xPos); // treat negative X as zero
- int res = (xCords / getCharWidth()) + ranges.getStartRes();
- res = Math.min(res, ranges.getEndRes());
- if (hasHiddenColumns())
- {
- res = getAlignment().getHiddenColumns().visibleToAbsoluteColumn(res);
- }
- res = Math.max(0, res);
- return res;
- }
}
this.setToolTipText(null);
return;
}
-
- int column = (evt.getX() / av.getCharWidth())
- + av.getRanges().getStartRes();
- column = Math.min(column, av.getRanges().getEndRes());
-
- if (av.hasHiddenColumns())
- {
- column = av.getAlignment().getHiddenColumns()
- .visibleToAbsoluteColumn(column);
- }
+ int column = av.getAbsoluteColumn(evt.getX());
AlignmentAnnotation ann = aa[row];
if (row > -1 && ann.annotations != null
@Override
public void mousePressed(MouseEvent evt)
{
- int x = (evt.getX() / av.getCharWidth()) + av.getRanges().getStartRes();
- final int res;
-
- if (av.hasHiddenColumns())
- {
- x = av.getAlignment().getHiddenColumns().visibleToAbsoluteColumn(x);
- }
-
- if (x >= av.getAlignment().getWidth())
- {
- res = av.getAlignment().getWidth() - 1;
- }
- else
- {
- res = x;
- }
-
+ final int res = av.getAbsoluteColumn(evt.getX());
min = res;
max = res;
reveal = av.getAlignment().getHiddenColumns()
.getRegionWithEdgeAtRes(res);
- res = av.getAlignment().getHiddenColumns().visibleToAbsoluteColumn(res);
-
ToolTipManager.sharedInstance().registerComponent(this);
this.setToolTipText(
MessageManager.getString("label.reveal_hidden_columns"));
*/
int findColumn(MouseEvent evt)
{
- int res = 0;
int x = evt.getX();
+ if (!av.getWrapAlignment())
+ {
+ return av.getAbsoluteColumn(x);
+ }
+
+ /*
+ * wrapped mode calculation
+ */
final int startRes = av.getRanges().getStartRes();
final int charWidth = av.getCharWidth();
- if (av.getWrapAlignment())
+ int res = 0;
+ int hgap = av.getCharHeight();
+ if (av.getScaleAboveWrapped())
{
- int hgap = av.getCharHeight();
- if (av.getScaleAboveWrapped())
- {
- hgap += av.getCharHeight();
- }
-
- int cHeight = av.getAlignment().getHeight() * av.getCharHeight()
- + hgap + seqCanvas.getAnnotationHeight();
+ hgap += av.getCharHeight();
+ }
- int y = evt.getY();
- y = Math.max(0, y - hgap);
- x -= seqCanvas.getLabelWidthWest();
- if (x < 0)
- {
- // mouse is over left scale
- return -1;
- }
+ int cHeight = av.getAlignment().getHeight() * av.getCharHeight() + hgap
+ + seqCanvas.getAnnotationHeight();
- int cwidth = seqCanvas.getWrappedCanvasWidth(this.getWidth());
- if (cwidth < 1)
- {
- return 0;
- }
- if (x >= cwidth * charWidth)
- {
- // mouse is over right scale
- return -1;
- }
+ int y = evt.getY();
+ y = Math.max(0, y - hgap);
+ x -= seqCanvas.getLabelWidthWest();
+ if (x < 0)
+ {
+ // mouse is over left scale
+ return -1;
+ }
- wrappedBlock = y / cHeight;
- wrappedBlock += startRes / cwidth;
- // allow for wrapped view scrolled right (possible from Overview)
- int startOffset = startRes % cwidth;
- res = wrappedBlock * cwidth + startOffset
- + Math.min(cwidth - 1, x / charWidth);
+ int cwidth = seqCanvas.getWrappedCanvasWidth(this.getWidth());
+ if (cwidth < 1)
+ {
+ return 0;
}
- else
+ if (x >= cwidth * charWidth)
{
- /*
- * make sure we calculate relative to visible alignment,
- * rather than right-hand gutter
- */
- x = Math.min(x, seqCanvas.getX() + seqCanvas.getWidth());
- res = (x / charWidth) + startRes;
- res = Math.min(res, av.getRanges().getEndRes());
+ // mouse is over right scale
+ return -1;
}
+ wrappedBlock = y / cHeight;
+ wrappedBlock += startRes / cwidth;
+ // allow for wrapped view scrolled right (possible from Overview)
+ int startOffset = startRes % cwidth;
+ res = wrappedBlock * cwidth + startOffset
+ + Math.min(cwidth - 1, x / charWidth);
+
if (av.hasHiddenColumns())
{
res = av.getAlignment().getHiddenColumns()
codingComplement.setUpdateStructures(needToUpdateStructureViews);
}
}
+
+ /**
+ * Answers the absolute column position (0..) (allowing for any hidden
+ * columns) for the given x position in the viewport. The position is
+ * restricted to the currently visible range, and to the width of the
+ * alignment. This method is not applicable, and throws an exception if
+ * called, if the view is in wrapped mode.<br>
+ * Example
+ * <ul>
+ * <li>alignment width 157 (uniref50.fa example)</li>
+ * <li>panel width 70</li>
+ * <li>columns 0-59 and 69-119 hidden (111 columns)</li>
+ * <li>leaves 56 columns visible, hidden columns left of and within the
+ * alignment</li>
+ * <li>getAbsoluteColumn(0) answers 60 (first visible column)</li>
+ * <li>getAbsoluteColumn(-20) answers 60</li>
+ * <li>getAbsoluteColumn(8*charWidth) answers 68 (just before hidden column
+ * marker)</li>
+ * <li>getAbsoluteColumn(9*charWidth) answers 120 (just after hidden column
+ * marker)</li>
+ * <li>getAbsoluteColumn(123456) answers 156 (last column of alignment)</li>
+ * </ul>
+ *
+ * @param xPos
+ * @return
+ * @throw IllegalStateException
+ */
+ public int getAbsoluteColumn(int xPos)
+ {
+ if (getWrapAlignment())
+ {
+ throw new IllegalStateException("Not valid in wrapped mode");
+ }
+ int xCords = Math.max(0, xPos); // treat negative X as zero
+ int res = (xCords / getCharWidth()) + ranges.getStartRes();
+ res = Math.min(res, ranges.getEndRes());
+ if (hasHiddenColumns())
+ {
+ res = getAlignment().getHiddenColumns().visibleToAbsoluteColumn(res);
+ }
+ res = Math.max(0, res);
+ return res;
+ }
}
assertEquals(0, ranges.getStartSeq());
assertEquals(2, ranges.getEndSeq());
}
+
+ @Test(groups = { "Functional" })
+ public void testGetAbsoluteColumn()
+ {
+ AlignFrame af = new FileLoader().LoadFileWaitTillLoaded(
+ "examples/uniref50.fa", DataSourceType.FILE);
+ AlignViewport av = af.getViewport();
+ ViewportRanges ranges = av.getRanges();
+ assertEquals(0, ranges.getStartRes());
+ assertEquals(59, ranges.getEndRes()); // 60 columns wide
+
+ int cw = av.getCharWidth();
+ assertEquals(0, av.getAbsoluteColumn(0));
+ assertEquals(0, av.getAbsoluteColumn(cw - 1));
+ assertEquals(1, av.getAbsoluteColumn(cw));
+
+ // negative x is treated as zero:
+ assertEquals(0, av.getAbsoluteColumn(-20));
+
+ // x to the right of panel is restricted to panel width:
+ assertEquals(59, av.getAbsoluteColumn(100 * cw));
+
+ // scroll right by 10 columns
+ af.alignPanel.setScrollValues(10, 0);
+ assertEquals(10, av.getAbsoluteColumn(0));
+ assertEquals(10, av.getAbsoluteColumn(cw - 1));
+ assertEquals(11, av.getAbsoluteColumn(cw));
+ assertEquals(10, av.getAbsoluteColumn(-20));
+ assertEquals(69, av.getAbsoluteColumn(100 * cw));
+ }
+
+ @Test(
+ groups =
+ { "Functional" },
+ expectedExceptions =
+ { IllegalStateException.class })
+ public void testGetAbsoluteColumn_wrapped()
+ {
+ testee.setWrapAlignment(true);
+ testee.getAbsoluteColumn(0);
+ }
+
+ @Test(groups = { "Functional" })
+ public void testGetAbsoluteColumn_hiddenColumns()
+ {
+ AlignFrame af = new FileLoader().LoadFileWaitTillLoaded(
+ "examples/uniref50.fa", DataSourceType.FILE);
+ AlignViewport av = af.getViewport();
+ ViewportRanges ranges = av.getRanges();
+ assertEquals(0, ranges.getStartRes());
+ assertEquals(59, ranges.getEndRes()); // 60 columns wide
+
+ av.hideColumns(11, 40); // 30 columns hidden, cols 0-10 visible
+ int cw = av.getCharWidth();
+ assertEquals(0, av.getAbsoluteColumn(0));
+ assertEquals(10, av.getAbsoluteColumn(10 * cw)); // left of hidden cols
+ assertEquals(41, av.getAbsoluteColumn(11 * cw)); // skipped 30 hidden
+
+ // scroll right by 11 columns - to just past hidden columns marker
+ af.alignPanel.setScrollValues(11, 0);
+ assertEquals(41, av.getAbsoluteColumn(0));
+
+ // hide absolute columns 60-70 (visible columns 19-29)
+ av.hideColumns(60, 70);
+ assertEquals(59, av.getAbsoluteColumn(18 * cw));
+ assertEquals(71, av.getAbsoluteColumn(19 * cw)); // skipped 11 hidden
+ }
}
git://source.jalview.org / jalview.git / commitdiff