</pre>
<p>If the boxes are left unchecked for a particular format, the
sequence limits will not be appended to the sequence id.</p>
+<p><em>Embed BioJSON to HTML export</em></p>
+<p>When this option is enabled, Jalview embeds <a href="bioJsonFormat.html">BioJSON</a> data within
+HTML files exported from Jalview at generation time. This enables the exported HTML files
+to be extracted and imported back into the Jalview desktop application at a later time.
+
<p><em>Use Modeller Output</em></p>
<p>This option only applies to PIR format output. Jalview
automatically reads PIR files with sequence descriptions compatible with