JAL-2349 rename ContactMatrixTest to SeqDistanceContactMatrix

diff --git a/src/jalview/datamodel/ContactMatrixTest.java b/src/jalview/datamodel/SeqDistanceContactMatrix.java
similarity index 91%
rename from src/jalview/datamodel/ContactMatrixTest.java
rename to src/jalview/datamodel/SeqDistanceContactMatrix.java
index 24d95d8..ee7de5e 100644 (file)
--- a/src/jalview/datamodel/ContactMatrixTest.java
+++ b/src/jalview/datamodel/SeqDistanceContactMatrix.java
@@ -8,11 +8,11 @@ import java.awt.Color;
  * @author jprocter
  *
  */
-public class ContactMatrixTest implements ContactMatrixI
+public class SeqDistanceContactMatrix implements ContactMatrixI
 {
   private int width = 0;
 
-  public ContactMatrixTest(int width)
+  public SeqDistanceContactMatrix(int width)
   {
     this.width = width;
   }

diff --git a/src/jalview/io/AppletFormatAdapter.java b/src/jalview/io/AppletFormatAdapter.java
index 93ff448..4c9324c 100755 (executable)
--- a/src/jalview/io/AppletFormatAdapter.java
+++ b/src/jalview/io/AppletFormatAdapter.java
@@ -26,7 +26,7 @@ import jalview.datamodel.Alignment;
 import jalview.datamodel.AlignmentAnnotation;
 import jalview.datamodel.AlignmentI;
 import jalview.datamodel.AlignmentView;
-import jalview.datamodel.ContactMatrixTest;
+import jalview.datamodel.SeqDistanceContactMatrix;
 import jalview.datamodel.PDBEntry.Type;
 import jalview.datamodel.SequenceI;
 import jalview.ext.jmol.JmolParser;
@@ -309,7 +309,7 @@ public class AppletFormatAdapter
 
     alignFile.addGroups(al);
 
-    al.addContactList(new ContactMatrixTest(al.getWidth()));
+    al.addContactList(new SeqDistanceContactMatrix(al.getWidth()));
 
     return al;
   }