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-#summary Archaeopteryx Documentation
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-= Archaeopteryx Documentation =
-<wiki:toc max_depth="3" />
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-= Introduction =
-
-Under development!
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-Documentation, tutorial, and examples for visualization, analysis, and editing of phylogenetic trees with [https://sites.google.com/site/cmzmasek/home/software/archaeopteryx/ Archaeopteryx].
-Some (older) documentation can also be found [http://aptxevo.wordpress.com/ here].
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-For developers: Information on the underlying [https://sites.google.com/site/cmzmasek/home/software/forester/ forester] framework is available [forester here].
-
-Author: [https://sites.google.com/site/cmzmasek/ Christian Zmasek], Sanford-Burnham Medical Research Institute
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-
- 
-Copyright (C) 2012 Christian M Zmasek. All rights reserved.
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-
-= Frequently Asked Questions =
-
-== How to read and display vector or expression data ==
-
-Aptx can be used to display vector or expression data associated with tree nodes:
-
-  # Ensure the configuration file contains this line: "show_vector_data:               display yes"
-  # Start Aptx and read in a tree ([http://forester.googlecode.com/files/apaf.xml example tree])
-  # Open "Tools" menu and select "read Vector/Expression Values" to read in a matrix (of, for example, expression values) ([http://forester.googlecode.com/files/apaf_expression.tab example expression values])
-
-It is also possible to store vector data in phyloXML formatted files ([http://forester.googlecode.com/files/apaf_with_vector_data.xml example]).
-
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