conserved BLOSUM62 score (which is higher). This value is normalised
for each column, and then plotted on a scale from 0 to 1.
</p>
- <p>Multiple alignment algorithms using the BLOSUM 62 substition
+ <p>Multiple alignment algorithms using the BLOSUM 62 substitution
matrices should, in theory, maximise alignment quality for an
un-gapped alignment, and locally maximise quality for gapped
alignments.</p>
matrix, and (since 2.8.1) is available for Tree and PCA
calculations.</li>
<li><a href="#simplenucleotide">Simple Nucleotide
- Substition</a> is a (fairly) arbitrary DNA/RNA substitution matrix.</li>
+ Substitution</a> is a (fairly) arbitrary DNA/RNA substitution matrix.</li>
<!-- <li><a href="#conservation">Conservation Matrices</a> A range of matrices for distinguishing amino-acids by physicochemical property conservation.
</li> -->
</ul>