final static int add_new_node = 13;
final static int edit_node_data = 14;
final static int sort_descendents = 15;
+ final static int get_ext_desc_data = 16;
// ---------------------------
// Display options for trees
// ---------------------------
{ "Open Sequence Web", "display" }, { "Open Taxonomy Web", "display" }, { "Blast", "display" },
{ "Cut Subtree", "display" }, { "Copy Subtree", "display" }, { "Paste Subtree", "display" },
{ "Delete Subtree/Node", "display" }, { "Add New Node", "display" }, { "Edit Node Data", "display" },
- { "Sort Descendants", "display" } };
+ { "Sort Descendants", "display" }, { "Get External Node Data", "display" } };
// This option is selected in the dropdown
int default_clickto = Configuration.display_node_data;
// --------------
else if ( name.equals( "sort_descendants" ) ) {
index = Configuration.sort_descendents;
}
+ else if ( name.equals( "get_ext_descendents_data" ) ) {
+ index = Configuration.get_ext_desc_data;
+ }
else if ( name.equals( "display_sequences" ) ) {
ForesterUtil
.printWarningMessage( Constants.PRG_NAME, "configuration key [display_sequences] is deprecated" );
private int _paste_subtree_item;
private int _add_new_node_item;
private int _edit_node_data_item;
+ private int _get_ext_desc_data;
private int _blast_item;
// zooming and quick tree manipulation buttons:
private JButton _zoom_in_x;
else if ( action == _edit_node_data_item ) {
setActionWhenNodeClicked( NodeClickAction.EDIT_NODE_DATA );
}
+ else if ( action == _get_ext_desc_data ) {
+ setActionWhenNodeClicked( NodeClickAction.GET_EXT_DESC_DATA );
+ }
else {
throw new RuntimeException( "unknown action: " + action );
}
}
cb_index++;
}
+ if ( _configuration.doDisplayClickToOption( Configuration.get_ext_desc_data ) ) {
+ _get_ext_desc_data = cb_index;
+ addClickToOption( Configuration.get_ext_desc_data,
+ _configuration.getClickToTitle( Configuration.get_ext_desc_data ) );
+ if ( default_option == Configuration.get_ext_desc_data ) {
+ selected_index = cb_index;
+ }
+ cb_index++;
+ }
if ( getOptions().isEditable() ) {
if ( _configuration.doDisplayClickToOption( Configuration.cut_subtree ) ) {
_cut_subtree_item = cb_index;
ADD_NEW_NODE,
EDIT_NODE_DATA,
SORT_DESCENDENTS,
+ GET_EXT_DESC_DATA,
BLAST;
}
}
case SORT_DESCENDENTS:
sortDescendants( node );
break;
+ case GET_EXT_DESC_DATA:
+ getExtDescNodeData( node );
+ break;
default:
throw new IllegalArgumentException( "unknown action: " + action );
}
}
+ private void getExtDescNodeData( final PhylogenyNode node ) {
+ System.out.println( node.toString() );
+ }
+
final void increaseDomainStructureEvalueThreshold() {
if ( _domain_structure_e_value_thr_exp < 3 ) {
_domain_structure_e_value_thr_exp += 1;