</tr>
<tr>
<td width="60" align="center" nowrap><strong><a
- name="Jalview.2.11.1">2.11.1</a><a name="Jalview.2.11.1.0">.0</a><br />
- <em>25/2/2020</em></strong></td>
+ id="Jalview.2.11.1">2.11.1</a><a id="Jalview.2.11.1.0">.0</a><br />
+ <em>27/03/2020</em></strong></td>
<td align="left" valign="top">
<ul>
- <li><!-- JAL-3121 -->Feature attributes from VCF files can be exported and re-imported as GFF3 files
+ <li>
+ <!-- JAL-3187 -->Option to show 'virtual' codon features on protein (or vice versa)
+ </li>
+ <li>
+ <!-- JAL-3304 -->Option to export virtual features if shown
</li>
<li>
- <!-- JAL-3376 -->Record "fixed column" values POS,
- ID, QUAL, FILTER from VCF as Feature Attributes
+ <!-- JAL-3302 -->Option to transfer virtual features to Chimera
</li>
<li>
- <!-- JAL-3375 -->More robust VCF numeric data field
- validation while parsing (e.g. AF* attributes)
+ <!-- JAL-3121 -->Feature attributes from VCF files can be exported and re-imported as GFF3 files
</li>
<li>
- <!-- JAL-3538 -->Font anti-aliasing in alignment views
- enabled by default
+ <!-- JAL-3376 -->Capture VCF "fixed column" values POS,
+ ID, QUAL, FILTER as Feature Attributes
</li>
<li>
- <!-- JAL -->
+ <!-- JAL-3375 -->More robust VCF numeric data field validation while parsing
</li>
+ <li>
+ <!-- JAL-3533 -->Feature Settings dialog keeps same screen position if reopened
+ </li>
+ <li>
+ <!-- JAL-3538 -->Font anti-aliasing in alignment views enabled by default
+ </li>
</ul><em>Jalview Installer</em>
- <ul>
+ <ul>
<li>
<!-- JAL-3449 -->Versions for install4j and getdown and installer template version reported
in console (may be null when Jalview launched as executable jar or via conda)
</li>
<li>
<!-- JAL-3393 -->Layout improvements for OSX .dmg Finder and higher quality background images
- </li>
+ </li>
<li>
- <!-- JAL-3393 -->New installer/application launcher generated with install4j 8.0.4
+ <!-- JAL-3394 -->New installer/application launcher generated with install4j 8.0.4
</li>
- <li><!-- JAL-3420 -->Jalview File Associations shown for Unix Platforms</li>
- <li><!-- JAL-3477 -->Improved defaults for maximum memory setting when running on large memory machines</li>
+ <li>
+ <!-- JAL-3420 -->Jalview File Associations shown for Unix Platforms</li>
+ <li>
+ <!-- JAL-3477 -->Improved defaults for maximum memory setting when running on large memory machines</li>
</ul> <em>Release processes</em>
<ul>
<li>
<!-- JAL-3513 -->Test code included in Clover coverage
report
</li>
- </ul> <em>Deprecations</em>
+ </ul>
</td>
<td align="left" valign="top">
<ul>
<li>
- <!-- -->
- </li>
- <li>
- <!-- JAL-3412 -->ID margin for CDS and Protein views not equal when split frame is first opened
+ <!-- JAL-3412 -->ID margins for CDS and Protein views not equal when split frame is first opened
</li>
<li>
- <!-- JAL-3296 -->Sequence position numbers in status bar not correct after editing a sequence's start position via GUI
+ <!-- JAL-3296 -->Sequence position numbers in status bar not correct after editing a sequence's start position
</li>
<li>
<!-- JAL-3377 -->Alignment is misaligned in wrapped mode
feature settings dialog also selects columns
</li>
<li>
- <!-- JAL-3473 -->SpinnerNumberModel causing
+ <!-- JAL-3473 -->SpinnerNumberModel causes
IllegalArgumentException in some circumstances
</li>
<li>
+ <!-- JAL-3534 -->Multiple feature settings dialogs can be opened for a view
+ </li>
+ <li>
+ <!-- JAL-2764 -->Feature Settings dialog is orphaned if alignment window is closed
+ </li>
+ <li>
<!-- JAL-3406 -->Credits missing some authors in Jalview
help documentation for 2.11.0 release
</li>
</ul> <em>Java 11 Compatibility issues</em>
<ul>
<li>
- <!-- JAL-2987 -->OSX - Can't view results in PDB/Uniprot FTS
+ <!-- JAL-2987 -->OSX - Can't view some search results in PDB/Uniprot search panel
</li>
</ul> <em>Installer</em>
<ul>
- <li><!-- JAL-3447 -->Jalview does not automatically create file associations for 3D structure files (.pdb, .mmcif. .cif)</li>
+ <li><!-- JAL-3447 -->Jalview should not create file associations for 3D structure files (.pdb, .mmcif. .cif)
+ </li>
</ul> <em>Repository and Source Release</em>
<ul>
<li>
- <!-- JAL-3474 -->removed redundant .gitignore files from
- repository
+ <!-- JAL-3474 -->removed obsolete .cvsignore files from repository
+ </li>
+ <li>
+ <!-- JAL-3541 -->Clover report generation running out of memory
</li>
</ul>
<em>New Known Issues</em>
enabled
</li>
<li>
- <!-- JAL-3542 -->Jalview Installation type always reports 'Source' in console output.
+ <!-- JAL-3542 -->Jalview Installation type always reports 'Source' in console output
</li>
</ul>
</td>