backout parts of the interface from another development branch

diff --git a/src/jalview/api/AlignViewportI.java b/src/jalview/api/AlignViewportI.java
index dd442f6..11fa615 100644 (file)
--- a/src/jalview/api/AlignViewportI.java
+++ b/src/jalview/api/AlignViewportI.java
@@ -48,19 +48,4 @@ public interface AlignViewportI
   boolean getCentreColumnLabels();
 
   boolean isCalculationInProgress(AlignmentAnnotation alignmentAnnotation);
-
-  AlignmentAnnotation getAlignmentQualityAnnot();
-
-  AlignmentAnnotation getAlignmentConservationAnnotation();
-
-  /**
-   * Test to see if viewport is still open and active
-   * @return true indicates that all references to viewport should be dropped 
-   */
-  boolean isClosed();
-  /**
-   * get the associated calculation thread manager for the view
-   * @return
-   */
-  AlignCalcManagerI getCalcManager();
 }