with alignment and overview windows
</li>
<li>
- <!-- JAL-2491 -->Linked scrolling of CDS/Protein views
- via Overview or sequence motif search operations
- </li>
- <li>
<!-- JAL-2514 -->Scrolling of wrapped alignment views via
overview
</li>
the application.
</li>
<li>
+ <!-- JAL-2491 -->Linked scrolling of CDS/Protein views
+ via Overview or sequence motif search operations
+ </li>
+ <li>
<!-- JAL-2547 -->Amend sequence features dialog box can be
opened by double clicking gaps within sequence feature
extent
<em>3D Structure</em>
<ul>
<li>
+ <!-- JAL-2430 -->Hidden regions in alignment views are not
+ coloured in linked structure views
+ </li>
+ <li>
<!-- JAL-1596 -->Faster Chimera/Jalview communication by
file-based command exchange
</li>
matrix - C->R should be '-3'<br />Old matrix restored
with this one-line groovy script:<br />jalview.analysis.scoremodels.ScoreModels.instance.BLOSUM62.@matrix[4][1]=3
</li>
- <li>
+ <li><a name="2102scoremodelbugs"/>
<!-- JAL-2397 -->Fixed Jalview's treatment of gaps in PCA
and substitution matrix based Tree calculations.<br /> <br />In
earlier versions of Jalview, gaps matching gaps were
<em>Rendering</em>
<ul>
<li>
- <!-- JAL-2430 -->Hidden regions in alignment views are not
- coloured in linked structure views
- </li>
- <li>
<!-- JAL-2421 -->Overview window visible region moves
erratically when hidden rows or columns are present
</li>