RefreshPanels after a colour change

diff --git a/src/jalview/gui/AlignmentPanel.java b/src/jalview/gui/AlignmentPanel.java
index 7856a42..3f7a781 100755 (executable)
--- a/src/jalview/gui/AlignmentPanel.java
+++ b/src/jalview/gui/AlignmentPanel.java
@@ -122,8 +122,8 @@ public class AlignmentPanel extends GAlignmentPanel implements AdjustmentListene
        av.setGlobalColourScheme( ccs );\r
 \r
     }\r
-    seqPanel.seqCanvas.paintFlag = true;\r
-    repaint();\r
+\r
+    RefreshPanels();\r
   }\r
 \r
   public void RefreshPanels()\r