--- /dev/null
+<!DOCTYPE html SYSTEM "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">\r
+<!--\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8)\r
+ * Copyright (C) 2012 J Procter, AM Waterhouse, LM Lui, J Engelhardt, G Barton, M Clamp, S Searle\r
+ * \r
+ * This file is part of Jalview.\r
+ * \r
+ * Jalview is free software: you can redistribute it and/or\r
+ * modify it under the terms of the GNU General Public License \r
+ * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.\r
+ * \r
+ * Jalview is distributed in the hope that it will be useful, but \r
+ * WITHOUT ANY WARRANTY; without even the implied warranty \r
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR \r
+ * PURPOSE. See the GNU General Public License for more details.\r
+ * \r
+ * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.\r
+-->\r
+<html xmlns="http://www.w3.org/1999/xhtml">\r
+ <head>Jalview i18n</head>\r
+ <body>\r
+<h1>Best practices</h1>\r
+<ol>\r
+<li>Follow the standards described in this guide</li>\r
+<li>Always use properties files for user interface text; never include displayable text in code</li>\r
+<li>Use properties files only for user interface text (Messages_xx.properties) and config files for configuration settings (jalview.properties).</li>\r
+<li>Use a proper naming schema for keys in your resource bundles. The name of the keys should provide some information about the context of the displayed text. This helps the translators during the translation process.</li>\r
+<li>Group keys by view, ie. edit.title, edit.instructions, list.title, list.instructions, create.title, etc</li>\r
+<li>Never use displayable text when executing comparisons within the logic of the tool (separate codified values from displayable text)</li>\r
+<li>Always use the MessageManager class for retrieving properties values, and invoke MessageManager methods dynamically, to accommodate dynamic user preferences (see MessageManager below).</li>\r
+<li>All numbers and dates should be formatted specific to the user's locale (e.g. java.text.NumberFormat and java.text.DateFormat)</li>\r
+<li>Test code in more than one language</li>\r
+</ol>\r
+<h1>MessageManager</h1>\r
+<p>The jalview.util.MessageManager class is a wrapper class for the ResourceBundle class. It provides dynamic language/locale support for individual users, and is recommended for all Jalview code.</p>\r
+<p>To use it within your code, you only have to invoke MessageManager with the text key in Messages_xx.properties:</p>\r
+<p>JButton ok = new JButton(MessageManager.getString("button.ok"));</p>\r
+<p>This will set JButton text to the one included at button.ok key. In English JButton text will be OK, while in Spanish will be Aceptar. This is the big thing of i18n. :)</p>\r
+<h1>How to translate Jalview</h1>\r
+<p>Anyone interested in localizing/translating Jalview is strongly encouraged to join the <a href="mailto:jalview-dev@jalview.org">Jalview Development List</a> list. We would recommend that you read this entire page before proceeding.</p>\r
+<p>If you are planning on working on a Jalview translation, please send us an email (<a href="mailto:jalview-dev@jalview.org">Jalview Development List</a>). There may be someone else already working on translating Jalview to your target language.</p>\r
+<p>Once you have downloaded the source code (available at <a href="http://www.jalview.org/download">http://www.jalview.org/download</a>), you must edit {jalview.home}/resources/lang/Messages_xx.properties, where xx refers to your language country code. If it doesn't exits, rename Messages.properties to Messages_xx.properties.</p>\r
+<p>Next step...start transtalation!</p>\r
+<p>Once you have it translated, we would appreciate if you contribute it forwarding the file to <a href="mailto:jalview-dev@jalview.org">Jalview Development List</a>. We will commit it to the code base as soon as possible. Thanks so much for this in advance!</p>\r
+</body>\r
+</html>\r
+\r
--- /dev/null
+action.cancel = Cancel\r
+action.create = Create\r
+action.update = Update\r
+action.delete = Delete\r
+action.snapshot = Snapshot\r
+action.clear = Clear\r
+action.accept = Accept\r
+action.select_ddbb = --- Select Database ---\r
+action.undo = Undo\r
+action.redo = Redo\r
+action.reset = Reset\r
+action.remove_left = Remove left\r
+action.remove_right = Remove right\r
+action.remove_empty_columns = Remove Empty Columns\r
+action.remove_all_gaps = Remove All Gaps\r
+action.boxes = Boxes\r
+action.text = Text\r
+action.by_pairwise_id = by Pairwise Identity\r
+action.by_id = by Id\r
+action.by_length = by Length\r
+action.by_group = by Group\r
+action.remove_redundancy = Remove Redundancy...\r
+action.pairwise_alignment = Pairwise Alignments...\r
+action.by_rna_helixes = by RNA Helices\r
+action.user_defined = User Defined...\r
+action.by_conservation = By Conservation\r
+action.wrap = Wrap\r
+action.show_gaps = Show Gaps\r
+action.find = Find...\r
+action.undefine_groups = Undefine Groups\r
+action.make_groups_selection = Make Groups for selection\r
+action.copy = Copy\r
+action.cut = Cut\r
+action.paste = Paste\r
+action.font = Font...\r
+action.scale_above = Scale Above\r
+action.scale_left = Scale Left\r
+action.scale_right = Scale Right\r
+action.by_tree_order = By Tree Order\r
+action.sort = Sort\r
+action.calculate_tree = Calculate Tree\r
+action.help = Help\r
+action.by_annotation = by Annotation...\r
+action.invert_sequence_selection = Invert Sequence Selection\r
+action.invert_column_selection = Invert Column Selection\r
+action.show = Show\r
+action.hide = Hide\r
+action.ok = OK\r
+action.set_defaults = Defaults\r
+action.remove_group = Remove Group\r
+action.hide_sequences = Hide Sequences\r
+action.reveal_all = Reveal All\r
+action.reveal_sequences = Reveal Sequences\r
+action.find_all = Find all\r
+action.find_next = Find next\r
+action.file = File\r
+action.view = View\r
+action.change_params = Change Parameters\r
+action.apply = Apply\r
+action.apply_threshold_all_groups = Apply threshold to all groups\r
+action.apply_all_groups = Apply to all Groups\r
+action.by_chain = By chain\r
+action.by_sequence = By Sequence\r
+action.paste_annotations = Paste Annotations\r
+action.format = Format\r
+action.select = Select\r
+action.new_view = New View\r
+action.close = Close\r
+action.add = Add\r
+action.save_as_default = Save as default\r
+action.cancel_fetch = Cancel Fetch\r
+action.save_omit_hidden_columns = Save / Omit Hidden Columns\r
+action.change_font = Change Font\r
+action.colour = Colour\r
+action.calculate = Calculate\r
+action.select_all = Select all\r
+action.deselect_all = Deselect all\r
+action.invert_selection = Invert selection\r
+action.using_jmol = Using Jmol\r
+action.link = Link\r
+action.show_chain = Show Chain\r
+label.str = Str:\r
+label.seq = Seq:\r
+label.structures_manager = Structures Manager\r
+label.nickname = Nickname:\r
+label.url = URL:\r
+label.input_file_url = Enter URL or Input File\r
+label.select_feature = Select feature:\r
+label.name = Name:\r
+label.name_param = Name: {0}\r
+label.group = Group:\r
+label.colour = Colour:\r
+label.description = Description:\r
+label.start = Start:\r
+label.end = End:\r
+label.current_parameter_set_name = Current parameter set name:\r
+label.service_action = Service Action:\r
+label.post_url = POST URL:\r
+label.url_suffix = URL Suffix\r
+label.sequence_source = Sequence Source\r
+label.per_seq = per Sequence\r
+label.result_vertically_separable = Results are vertically separable\r
+label.amend = Amend\r
+label.undo_command = Undo {0}\r
+label.redo_command = Redo {0}\r
+label.principal_component_analysis = Principal Component Analysis\r
+label.average_distance_identity = Average Distance Using % Identity\r
+label.neighbour_joining_identity = Neighbour Joining Using % Identity\r
+label.status_bar = Status bar\r
+label.out_to_textbox = Output to Textbox\r
+label.clustalx = Clustalx\r
+label.zappo = Zappo\r
+label.taylor = Taylor\r
+label.hydrophobicity = Hydrophobicity\r
+label.helix_propensity = Helix Propensity\r
+label.strand_propensity = Strand Propensity\r
+label.turn_propensity = Turn Propensity\r
+label.buried_index = Buried Index\r
+label.purine_pyrimidine = Purine/Pyrimidine\r
+label.percentage_identity = Percentage Identity\r
+label.blosum62_score = BLOSUM62 Score\r
+label.tcoffee_scores = T-Coffee Scores\r
+label.average_distance_bloslum62 = Average Distance Using BLOSUM62\r
+label.neighbour_blosum62 = Neighbour Joining Using BLOSUM62\r
+label.show_annotations = Show annotations\r
+label.colour_text = Colour Text\r
+label.show_non_conversed = Show nonconserved\r
+label.overview_window = Overview Window\r
+label.none = None\r
+label.above_identity_threshold = Above Identity Threshold\r
+label.nucleotide = Nucleotide\r
+label.to_new_alignment = To New Alignment\r
+label.to_this_alignment = Add To This Alignment\r
+label.apply_colour_to_all_groups = Apply Colour To All Groups\r
+label.modify_identity_thereshold = Modify Identity Threshold...\r
+label.modify_conservation_thereshold = Modify Conservation Threshold...\r
+label.input_from_textbox = Input from textbox\r
+label.centre_column_labels = Centre column labels\r
+label.automatic_scrolling = Automatic Scrolling\r
+label.documentation = Documentation\r
+label.about = About...\r
+label.show_sequence_limits = Show Sequence Limits\r
+label.feature_settings = Feature Settings...\r
+label.sequence_features = Sequence Features\r
+label.all_columns = All Columns\r
+label.all_sequences = All Sequences\r
+label.selected_columns = Selected Columns \r
+label.selected_sequences = Selected Sequences\r
+label.all_but_selected_region = All but Selected Region (Shift+Ctrl+H)\r
+label.selected_region = Selected Region\r
+label.all_sequences_columns = All Sequences and Columns\r
+label.group_consensus = Group Consensus\r
+label.group_conservation = Group Conservation\r
+label.show_consensus_histogram = Show Consensus Histogram\r
+label.show_consensus_logo = Show Consensus Logo\r
+label.norm_consensus_logo = Normalise Consensus Logo\r
+label.apply_all_groups = Apply to all groups\r
+label.autocalculated_annotation = Autocalculated Annotation\r
+label.min_colour = Min Colour\r
+label.max_colour = Max Colour\r
+label.use_original_colours = Use Original Colours\r
+label.threshold_minmax = Threshold is min/max\r
+label.represent_group_with = Represent Group with\r
+label.selection = Selection\r
+label.group_colour = Group Colour\r
+label.sequence = Sequence\r
+label.view_pdb_structure = View PDB Structure\r
+label.min = Min:\r
+label.max = Max:\r
+label.colour_by_label = Colour by label\r
+label.new_feature = New Feature\r
+label.match_case = Match Case\r
+label.view_alignment_editor = View in alignment editor\r
+label.labels = Labels\r
+label.output_values = Output Values...\r
+label.input_data = Input Data...\r
+label.nucleotide_matrix = Nucleotide matrix\r
+label.protein_matrix = Protein matrix\r
+label.show_bootstrap_values = Show Bootstrap Values\r
+label.show_distances = Show distances\r
+label.mark_unassociated_leaves = Mark Unassociated Leaves\r
+label.fit_to_window = Fit To Window\r
+label.newick_format = Newick Format\r
+label.colours = Colours\r
+label.view_mapping = View Mapping\r
+label.wireframe = Wireframe\r
+label.depthcue = Depthcue\r
+label.z_buffering = Z Buffering\r
+label.charge_cysteine = Charge & Cysteine\r
+label.all_chains_visible = All Chains Visible\r
+label.successfully_added_features_alignment = Successfully added features to alignment\r
+label.keyboard_editing_mode = Keyboard editing mode is {0}\r
+label.paste_features_annotations_Tcoffee_here = Paste your features / annotations / T-coffee score file here.\r
+label.removed_columns = Removed {0} columns.\r
+label.removed_empty_columns = Removed {0} empty columns.\r
+label.paste_newick_tree_file = Paste your Newick tree file here.\r
+label.order_by_params = Order by {0}\r
+label.html_content = <html>{0}</html>\r
+label.paste_pdb_file= Paste your PDB file here.\r
+label.paste_pdb_file_for_sequence = Paste PDB file for sequence {0}\r
+label.could_not_parse_newick_file = Could not parse Newick file\!\n {0}\r
+label.successfully_pasted_tcoffee_scores_to_alignment= Successfully pasted T-Coffee scores to alignment.\r
+label.failed_add_tcoffee_scores = Failed to add T-Coffee scores: \r
+label.successfully_pasted_annotation_to_alignment= Successfully pasted annotation to alignment.\r
+label.successfully_pasted_alignment_file = Successfully pasted alignment file\r
+label.paste_your_alignment_file = Paste your alignment file here\r
+label.paste_your = Paste your\r
+label.finished_searching = Finished searching\r
+label.search_results= Search results {0} : {1}\r
+label.found_match_for = Found match for {0}\r
+label.font = Font:\r
+label.size = Size:\r
+label.style = Style:\r
+label.enter_redundancy_threshold = Enter the redundancy threshold\r
+label.calculating = Calculating....\r
+label.modify_conservation_visibility = Modify conservation visibility\r
+label.colour_residues_above_occurence = Colour residues above % occurence\r
+label.set_this_label_text = set this label text\r
+label.sequences_from = Sequences from {0}\r
+label.successfully_loaded_file = Successfully loaded file {0}\r
+label.successfully_saved_to_file_in_format = Successfully saved to file: {0} in {1} format.\r
+label.copied_sequences_to_clipboard = Copied {0} sequences to clipboard.\r
+label.check_file_matches_sequence_ids_alignment = Check that the file matches sequence IDs in the alignment.\r
+label.problem_reading_tcoffee_score_file = Problem reading T-COFFEE score file\r
+label.source_to_target = {0} to '{1}'\r
+label.per_sequence_only= Per-sequence only\r
+label.to_file = to File\r
+label.to_textbox = to Textbox\r
+label.jalview = Jalview\r
+label.csv_spreadsheet = CSV (Spreadsheet)\r
+label.status = [Status]\r
+label.channels = Channels\r
+label.channel_title_item_count = {0} ({1})\r
+label.blog_item_published_on_date = {0} {1} \r
+label.select_das_service_from_table = Select a DAS service from the table to read a full description here.</font></html>\r
+label.session_update = Session Update\r
+label.new_vamsas_session = New Vamsas Session\r
+label.groovy_console = Groovy Console...\r
+label.lineart = Lineart\r
+label.dont_ask_me_again = Don't ask me again\r
+label.select_eps_character_rendering_style = Select EPS character rendering style\r
+label.invert_selection = Invert Selection\r
+label.optimise_order = Optimise Order\r
+label.seq_sort_by_score = Seq sort by Score\r
+label.load_colours = Load Colours\r
+label.save_colours = Save Colours\r
+label.fetch_das_features = Fetch DAS Features\r
+label.selected_database_to_fetch_from = Selected {0} database {1} to fetch from {2} \r
+label.database_param = Database: {0}\r
+label.example_param = Example: {0}\r
+label.select_file_format_before_saving = You must select a file format before saving!\r
+label.file_format_not_specified = File format not specified\r
+label.alignment_contains_hidden_columns = The Alignment contains hidden columns.\nDo you want to save only the visible alignment?\r
+label.couldnt_save_file = Couldn't save file: {0}\r
+label.error_saving_file = Error Saving File\r
+label.remove_from_default_list = Remove from default list?\r
+label.remove_user_defined_colour = Remove user defined colour\r
+label.you_must_select_least_two_sequences = You must select at least 2 sequences.\r
+label.invalid_selection = Invalid Selection\r
+label.principal_component_analysis_must_take_least_four_input_sequences = Principal component analysis must take\nat least 4 input sequences.\r
+label.sequence_selection_insufficient = Sequence selection insufficient\r
+label.you_need_more_two_sequences_selected_build_tree = You need to have more than two sequences selected to build a tree!\r
+label.not_enough_sequences = Not enough sequences\r
+label.selected_region_to_tree_may_only_contain_residues_or_gaps = The selected region to create a tree may\nonly contain residues or gaps.\nTry using the Pad function in the edit menu,\nor one of the multiple sequence alignment web services.\r
+label.sequences_selection_not_aligned = Sequences in selection are not aligned\r
+label.sequences_must_be_aligned_before_creating_tree = The sequences must be aligned before creating a tree.\nTry using the Pad function in the edit menu,\n or one of the multiple sequence alignment web services.\r
+label.sequences_not_aligned = Sequences not aligned\r
+label.problem_reading_tree_file = Problem reading tree file\r
+label.possible_problem_with_tree_file = Possible problem with tree file\r
+label.select_at_least_three_bases_in_at_least_one_sequence_to_cDNA_translation = Please select at least three bases in at least one sequence in order to perform a cDNA translation.\r
+label.translation_failed = Translation Failed\r
+label.error_when_translating_sequences_submit_bug_report = Unfortunately, something went wrong when translating your sequences.\nPlease take a look in the Jalview java console\nand submit a bug report including the stacktrace.\r
+label.implementation_error = Implementation error:\r
+label.automatically_associate_pdb_files_with_sequences_same_name = Do you want to automatically associate the {0} PDB files with sequences in the alignment that have the same name?\r
+label.automatically_associate_pdb_files_by_name = Automatically Associate PDB files by name\r
+label.ignore_unmatched_dropped_files_info = <html>Do you want to <em>ignore</em> the {0} files whose names did not match any sequence IDs ?</html>\r
+label.ignore_unmatched_dropped_files = Ignore unmatched dropped files?\r
+label.enter_view_name = Enter View Name\r
+label.enter_label = Enter label\r
+label.enter_label_for_the_structure = Enter a label for the structure?\r
+label.pdb_entry_is_already_displayed = {0} is already displayed.\nDo you want to re-use this viewer ?\r
+label.map_sequences_to_visible_window = Map Sequences to Visible Window: {0}\r
+label.add_pdbentry_to_view = Do you want to add {0} to the view called\n'{1}'\n\r
+label.align_to_existing_structure_view = Align to existing structure view\r
+label.pdb_entries_couldnt_be_retrieved = The following pdb entries could not be retrieved from the PDB\:\n{0}\nPlease try downloading them manually.\r
+label.couldnt_load_file = Couldn't load file\r
+label.couldnt_find_pdb_id_in_file = Couldn't find a PDB id in the file supplied. Please enter an Id to identify this structure.\r
+label.no_pdb_id_in_file = No PDB Id in File\r
+label.couldnt_read_pasted_text = Couldn't read the pasted text {0}\r
+label.error_parsing_text = Error parsing text\r
+label.enter_local_das_source = Enter Nickname & URL of Local DAS Source\r
+label.you_can_only_edit_or_remove_local_das_sources = You can only edit or remove local DAS Sources!\r
+label.public_das_source = Public DAS source - not editable\r
+label.input_alignment_from_url = Input Alignment From URL\r
+label.couldnt_import_as_vamsas_session = Couldn't import '{0}' as a new vamsas session.\r
+label.vamsas_document_import_failed = Vamsas Document Import Failed\r
+label.couldnt_locate = Couldn't locate {0}\r
+label.url_not_found = URL not found\r
+label.no_link_selected = No link selected\r
+label.new_sequence_url_link = New sequence URL link\r
+label.cannot_edit_annotations_in_wrapped_view = Cannot edit annotations in wrapped view\r
+label.wrapped_view_no_edit = Wrapped view - no edit\r
+label.error_retrieving_data = Error Retrieving Data\r
+label.user_colour_scheme_must_have_name = User colour scheme must have a name\r
+label.no_name_colour_scheme = No name for colour scheme\r
+label.invalid_url = Invalid URL !\r
+label.error_loading_file = Error loading file\r
+label.problems_opening_file = Encountered problems opening {0}!!\r
+label.file_open_error = File open error\r
+label.no_das_sources_selected_warn = No das sources were selected.\nPlease select some sources and\ntry again.\r
+label.no_das_sources_selected_title = No DAS Sources Selected\r
+label.colour_scheme_exists_overwrite = Colour scheme {0} exists.\nContinue saving colour scheme as {1}?"\r
+label.duplicate_scheme_name = Duplicate scheme name\r
+label.jalview_new_questionnaire = There is a new Questionnaire available. Would you like to complete it now ?\n\r
+label.jalview_user_survey = Jalview User Survey\r
+label.alignment_properties = Alignment Properties: {0}\r
+label.alignment_props = Alignment Properties\r
+label.input_cut_paste = Cut & Paste Input\r
+label.alignment_output_command = Alignment output - {0}\r
+label.annotations = Annotations\r
+label.features = Features\r
+label.overview_params = Overview {0}\r
+label.paste_newick_file = Paste Newick file\r
+label.load_tree_from_file = From File - \r
+label.colour_by_annotation = Colour by Annotation\r
+label.selection_output_command = Selection output - {0}\r
+label.annotation_for_displayid = <p><h2>Annotation for {0} </h2></p><p>\r
+label.pdb_sequence_mapping = PDB - Sequence Mapping\r
+label.pca_details = PCA details\r
+label.redundancy_threshold_selection = Redundancy threshold selection\r
+label.user_defined_colours = User defined colours\r
+label.jalviewLite_release = JalviewLite - Release {0}\r
+label.jaview_build_date = Build date: {0}\r
+label.jalview_authors_1 = Authors: Jim Procter, Andrew Waterhouse, Jan Engelhardt, Lauren Lui,\r
+label.jalview_authors_2 = Michele Clamp, James Cuff, Steve Searle, David Martin & Geoff Barton.\r
+label.jalview_dev_managers = Development managed by The Barton Group, University of Dundee, Scotland, UK.\r
+label.jalview_distribution_lists = For help, see the FAQ at www.jalview.org and/or join the jalview-discuss@jalview.org mailing list\r
+label.jalview_please_cite = If you use Jalview, please cite:\r
+label.jalview_cite_1_authors = Waterhouse, A.M., Procter, J.B., Martin, D.M.A, Clamp, M. and Barton, G. J. (2009)\r
+label.jalview_cite_1_title = Jalview Version 2 - a multiple sequence alignment editor and analysis workbench\r
+label.jalview_cite_1_ref = Bioinformatics doi: 10.1093/bioinformatics/btp033\r
+label.right_click = Right click\r
+label.to_add_annotation = to add annotation\r
+label.alignment_has_no_annotations = Alignment has no annotations\r
+label.retrieving_pdb_data = Retrieving PDB data...\r
+label.label = Label\r
+label.no_features_added_to_this_alignment = No Features added to this alignment!!\r
+label.features_can_be_added_from_searches_1 = (Features can be added from searches or\r
+label.features_can_be_added_from_searches_2 = from Jalview / GFF features files)\r
+label.calculating_pca= Calculating PCA\r
+label.reveal_columns = Reveal Columns\r
+label.jalview_cannot_open_file = Jalview can't open file\r
+label.jalview_applet = Jalview applet\r
+label.loading_data = Loading data\r
+label.memory_stats = Total Free Memory: {0} MB; Max Memory: {1} MB; {2} %\r
+label.calculating_tree = Calculating tree\r
+label.state_queueing = queuing\r
+label.state_running = running\r
+label.state_complete = complete\r
+label.state_job_cancelled = job cancelled!!\r
+label.state_job_error = job error!\r
+label.server_error_try_later = Server Error! (try later)\r
+label.error_loading_pdb_data = Error loading PDB data!!\r
+label.fetching_pdb_data = Fetching PDB data...\r
+label.structure_type = Structure_type\r
+label.settings_for_type = Settings for {0}\r
+label.view_full_application = View in Full Application\r
+label.load_associated_tree = Load Associated Tree ...\r
+label.load_features_annotations = Load Features/Annotations ...\r
+label.export_features = Export Features ...\r
+label.export_annotations = Export Annotations ...\r
+label.jalview_copy = Copy (Jalview Only)\r
+label.jalview_cut = Cut (Jalview Only)\r
+label.to_upper_case = To Upper Case\r
+label.to_lower_case = To Lower Case\r
+label.toggle_case = Toggle Case\r
+label.edit_name_description = Edit Name/Description\r
+label.create_sequence_feature = Create Sequence Feature\r
+label.edit_sequence = Edit Sequence\r
+label.sequence_details = Sequence Details\r
+label.jmol_help = Jmol Help\r
+label.all = All\r
+label.sort_by_score = Sort by Score\r
+label.sort_by_density = Sort by Density\r
+label.reveal = Reveal\r
+label.hide_columns = Hide Columns\r
--- /dev/null
+action.cancel = Cancelar\r
+action.create = Crear\r
+action.update = Actualizar\r
+action.delete = Borrar\r
+action.snapshot = Captura\r
+action.clear = Limpiar\r
+action.accept = Aceptar\r
import jalview.appletgui.*;
import jalview.structure.*;
+import jalview.util.MessageManager;
public class AppletPDBCanvas extends Panel implements MouseListener,
MouseMotionListener, StructureListener
g.fillRect(0, 0, getSize().width, getSize().height);
g.setColor(Color.black);
g.setFont(new Font("Verdana", Font.BOLD, 14));
- g.drawString("Error loading PDB data!!", 50, getSize().height / 2);
+ g.drawString(MessageManager.getString("label.error_loading_pdb_data"), 50, getSize().height / 2);
return;
}
{
g.setColor(Color.black);
g.setFont(new Font("Verdana", Font.BOLD, 14));
- g.drawString("Fetching PDB data...", 50, getSize().height / 2);
+ g.drawString(MessageManager.getString("label.fetching_pdb_data"), 50, getSize().height / 2);
return;
}
import jalview.appletgui.*;
import jalview.datamodel.*;
import jalview.schemes.*;
+import jalview.util.MessageManager;
public class AppletPDBViewer extends EmbmenuFrame implements
ActionListener, ItemListener
false, null);
Frame frame = new Frame();
frame.add(cap);
- jalview.bin.JalviewLite.addFrame(frame, "PDB - Sequence Mapping",
+ jalview.bin.JalviewLite.addFrame(frame, MessageManager.getString("label.pdb_sequence_mapping"),
500, 600);
cap.setText(pdbcanvas.mappingDetails.toString());
private void jbInit() throws Exception
{
setMenuBar(jMenuBar1);
- fileMenu.setLabel("File");
- coloursMenu.setLabel("Colours");
- mapping.setLabel("View Mapping");
+ fileMenu.setLabel(MessageManager.getString("action.file"));
+ coloursMenu.setLabel(MessageManager.getString("label.colours"));
+ mapping.setLabel(MessageManager.getString("label.view_mapping"));
mapping.addActionListener(this);
- wire.setLabel("Wireframe");
+ wire.setLabel(MessageManager.getString("label.wireframe"));
wire.addItemListener(this);
depth.setState(true);
- depth.setLabel("Depthcue");
+ depth.setLabel(MessageManager.getString("label.depthcue"));
depth.addItemListener(this);
zbuffer.setState(true);
- zbuffer.setLabel("Z Buffering");
+ zbuffer.setLabel(MessageManager.getString("label.z_buffering"));
zbuffer.addItemListener(this);
- charge.setLabel("Charge & Cysteine");
+ charge.setLabel(MessageManager.getString("label.charge_cysteine"));
charge.addActionListener(this);
- hydro.setLabel("Hydrophobicity");
+ hydro.setLabel(MessageManager.getString("label.hydrophobicity"));
hydro.addActionListener(this);
- chain.setLabel("By Chain");
+ chain.setLabel(MessageManager.getString("action.by_chain"));
chain.addActionListener(this);
- seqButton.setLabel("By Sequence");
+ seqButton.setLabel(MessageManager.getString("action.by_sequence"));
seqButton.addActionListener(this);
- allchains.setLabel("All Chains Visible");
+ allchains.setLabel(MessageManager.getString("label.all_chains_visible"));
allchains.addItemListener(this);
- viewMenu.setLabel("View");
- zappo.setLabel("Zappo");
+ viewMenu.setLabel(MessageManager.getString("action.view"));
+ zappo.setLabel(MessageManager.getString("label.zappo"));
zappo.addActionListener(this);
- taylor.setLabel("Taylor");
+ taylor.setLabel(MessageManager.getString("label.taylor"));
taylor.addActionListener(this);
- helix.setLabel("Helix Propensity");
+ helix.setLabel(MessageManager.getString("label.helix_propensity"));
helix.addActionListener(this);
- strand.setLabel("Strand Propensity");
+ strand.setLabel(MessageManager.getString("label.strand_propensity"));
strand.addActionListener(this);
- turn.setLabel("Turn Propensity");
+ turn.setLabel(MessageManager.getString("label.turn_propensity"));
turn.addActionListener(this);
- buried.setLabel("Buried Index");
+ buried.setLabel(MessageManager.getString("label.buried_index"));
buried.addActionListener(this);
- user.setLabel("User Defined...");
+ user.setLabel(MessageManager.getString("action.user_defined"));
user.addActionListener(this);
jMenuBar1.add(fileMenu);
jMenuBar1.add(coloursMenu);
import jalview.gui.*;
import jalview.io.*;
import jalview.schemes.*;
+import jalview.util.MessageManager;
import jalview.ws.ebi.EBIFetchClient;
public class PDBViewer extends JInternalFrame implements Runnable
int option = JOptionPane.showInternalConfirmDialog(
jalview.gui.Desktop.desktop,
- "Remove from default list?",
- "Remove user defined colour",
+ MessageManager.getString("label.remove_from_default_list"),
+ MessageManager.getString("label.remove_user_defined_colour"),
JOptionPane.YES_NO_OPTION);
if (option == JOptionPane.YES_OPTION)
{
import jalview.commands.*;
import jalview.datamodel.*;
import jalview.schemes.*;
+import jalview.util.MessageManager;
import jalview.util.UrlLink;
import jalview.io.AppletFormatAdapter;
import jalview.io.SequenceAnnotationReport;
CheckboxMenuItem displayNonconserved = new CheckboxMenuItem();
- Menu editMenu = new Menu("Edit");
+ Menu editMenu = new Menu(MessageManager.getString("action.edit"));
- MenuItem copy = new MenuItem("Copy (Jalview Only)");
+ MenuItem copy = new MenuItem(MessageManager.getString("label.jalview_copy"));
- MenuItem cut = new MenuItem("Cut (Jalview Only)");
+ MenuItem cut = new MenuItem(MessageManager.getString("label.jalview_cut"));
- MenuItem toUpper = new MenuItem("To Upper Case");
+ MenuItem toUpper = new MenuItem(MessageManager.getString("label.to_upper_case"));
- MenuItem toLower = new MenuItem("To Lower Case");
+ MenuItem toLower = new MenuItem(MessageManager.getString("label.to_lower_case"));
- MenuItem toggleCase = new MenuItem("Toggle Case");
+ MenuItem toggleCase = new MenuItem(MessageManager.getString("label.toggle_case"));
Menu outputmenu = new Menu();
MenuItem repGroup = new MenuItem();
- MenuItem sequenceName = new MenuItem("Edit Name/Description");
+ MenuItem sequenceName = new MenuItem(MessageManager.getString("label.edit_name_description"));
- MenuItem sequenceFeature = new MenuItem("Create Sequence Feature");
+ MenuItem sequenceFeature = new MenuItem(MessageManager.getString("label.create_sequence_feature"));
- MenuItem editSequence = new MenuItem("Edit Sequence");
+ MenuItem editSequence = new MenuItem(MessageManager.getString("label.edit_sequence"));
- MenuItem sequenceDetails = new MenuItem("Sequence Details ...");
+ MenuItem sequenceDetails = new MenuItem(MessageManager.getString("label.sequence_details") + "...");
- MenuItem selSeqDetails = new MenuItem("Sequence Details ...");
+ MenuItem selSeqDetails = new MenuItem(MessageManager.getString("label.sequence_details") + "...");
Sequence seq;
if (sg != null && sg.getSize() > 0)
{
- editGroupName.setLabel("Name: " + sg.getName());
+ editGroupName.setLabel(MessageManager.formatMessage("label.name_param", new String[]{sg.getName()}));
showText.setState(sg.getDisplayText());
showColourText.setState(sg.getColourText());
showBoxes.setState(sg.getDisplayBoxes());
displayNonconserved.setState(sg.getShowNonconserved());
if (!ap.av.getAlignment().getGroups().contains(sg))
{
- menu1.setLabel("Edit New Group");
+ menu1.setLabel(MessageManager.getString("action.edit_new_group"));
groupMenu.remove(unGroupMenuItem);
} else {
- menu1.setLabel("Edit Group");
+ menu1.setLabel(MessageManager.getString("action.edit_group"));
groupMenu.remove(createGroupMenuItem);
}
if (links != null && links.size() > 0)
{
- Menu linkMenu = new Menu("Link");
+ Menu linkMenu = new Menu(MessageManager.getString("action.link"));
String link;
for (int i = 0; i < links.size(); i++)
{
if (seq != null)
{
seqMenu.setLabel(seq.getName());
- repGroup.setLabel("Represent Group with " + seq.getName());
+ repGroup.setLabel(MessageManager.formatMessage("label.represent_group_with", new String[]{seq.getName()}));
}
else
{
Frame frame = new Frame();
frame.add(cap);
jalview.bin.JalviewLite.addFrame(frame,
- "Selection output - " + e.getActionCommand(), 600, 500);
+ MessageManager.formatMessage("label.selection_output_command", new String[]{e.getActionCommand()}),600, 500);
// JBPNote: getSelectionAsNewSequence behaviour has changed - this method
// now returns a full copy of sequence data
// TODO consider using getSequenceSelection instead here
StringBuffer contents = new StringBuffer();
for (SequenceI seq : sequences)
{
- contents.append("<p><h2>Annotation for " + seq.getDisplayId(true)
- + "</h2></p><p>");
+ contents.append(MessageManager.formatMessage("label.annotation_for_displayid",new String[]{seq.getDisplayId(true)}));
new SequenceAnnotationReport(null)
.createSequenceAnnotationReport(
contents,
jalview.bin.JalviewLite.addFrame(frame, "Sequence Details for "
+ (sequences.length == 1 ? sequences[0].getDisplayId(true)
: "Selection"), 600, 500);
- cap.setText("<html>" + contents.toString() + "</html>");
+ cap.setText(MessageManager.formatMessage("label.html_content", new String[]{contents.toString()}));
}
void editName()
else
{
CutAndPasteTransfer cap = new CutAndPasteTransfer(true, ap.alignFrame);
- cap.setText("Paste your PDB file here.");
+ cap.setText(MessageManager.getString("label.paste_pdb_file"));
cap.setPDBImport(seq);
Frame frame = new Frame();
frame.add(cap);
jalview.bin.JalviewLite.addFrame(frame,
- "Paste PDB file for sequence " + seq.getName(), 400, 300);
+ MessageManager.formatMessage("label.paste_pdb_file_for_sequence", new String[]{seq.getName()}), 400, 300);
}
}
private void jbInit() throws Exception
{
- groupMenu.setLabel("Selection");
+ groupMenu.setLabel(MessageManager.getString("label.selection"));
sequenceFeature.addActionListener(this);
editGroupName.addActionListener(this);
- unGroupMenuItem.setLabel("Remove Group");
+ unGroupMenuItem.setLabel(MessageManager.getString("action.remove_group"));
unGroupMenuItem.addActionListener(this);
- createGroupMenuItem.setLabel("Create Group");
+ createGroupMenuItem.setLabel(MessageManager.getString("action.create_group"));
createGroupMenuItem.addActionListener(this);
-
- nucleotideMenuItem.setLabel("Nucleotide");
+
+ nucleotideMenuItem.setLabel(MessageManager.getString("label.nucleotide"));
nucleotideMenuItem.addActionListener(this);
conservationMenuItem.addItemListener(this);
abovePIDColour.addItemListener(this);
- colourMenu.setLabel("Group Colour");
- showBoxes.setLabel("Boxes");
+ colourMenu.setLabel(MessageManager.getString("label.group_colour"));
+ showBoxes.setLabel(MessageManager.getString("label.boxes"));
showBoxes.setState(true);
showBoxes.addItemListener(this);
sequenceName.addActionListener(this);
sequenceDetails.addActionListener(this);
selSeqDetails.addActionListener(this);
- displayNonconserved.setLabel("Show Nonconserved");
+ displayNonconserved.setLabel(MessageManager.getString("label.show_non_conversed"));
displayNonconserved.setState(false);
displayNonconserved.addItemListener(this);
- showText.setLabel("Text");
+ showText.setLabel(MessageManager.getString("label.text"));
showText.addItemListener(this);
- showColourText.setLabel("Colour Text");
+ showColourText.setLabel(MessageManager.getString("label.colour_text"));
showColourText.addItemListener(this);
- outputmenu.setLabel("Output to Textbox...");
- seqMenu.setLabel("Sequence");
- pdb.setLabel("View PDB Structure");
- hideSeqs.setLabel("Hide Sequences");
- repGroup.setLabel("Represent Group with");
- revealAll.setLabel("Reveal All");
- revealSeq.setLabel("Reveal Sequences");
- menu1.setLabel("Group");
+ outputmenu.setLabel(MessageManager.getString("label.out_to_textbox"));
+ seqMenu.setLabel(MessageManager.getString("label.sequence"));
+ pdb.setLabel(MessageManager.getString("label.view_pdb_structure"));
+ hideSeqs.setLabel(MessageManager.getString("action.hide_sequences"));
+ repGroup.setLabel(MessageManager.getString("label.represent_group_with"));
+ revealAll.setLabel(MessageManager.getString("action.reveal_all"));
+ revealSeq.setLabel(MessageManager.getString("action.reveal_sequences"));
+ menu1.setLabel(MessageManager.getString("label.group"));
add(groupMenu);
this.add(seqMenu);
this.add(hideSeqs);
import jalview.schemes.TurnColourScheme;
import jalview.schemes.ZappoColourScheme;
import jalview.structure.StructureSelectionManager;
+import jalview.util.MessageManager;
import java.awt.BorderLayout;
import java.awt.Canvas;
viewport.featureSettings.refreshTable();
}
alignPanel.paintAlignment(true);
- statusBar.setText("Successfully added features to alignment.");
+ statusBar.setText(MessageManager.getString("label.successfully_added_features_alignment"));
}
return featuresFile;
}
case KeyEvent.VK_F2:
viewport.cursorMode = !viewport.cursorMode;
- statusBar.setText("Keyboard editing mode is "
- + (viewport.cursorMode ? "on" : "off"));
+ statusBar.setText(MessageManager.formatMessage("label.keyboard_editing_mode", new String[]{(viewport.cursorMode ? "on" : "off")}));
if (viewport.cursorMode)
{
alignPanel.seqPanel.seqCanvas.cursorX = viewport.startRes;
cap.setText(contents.toString());
Frame frame = new Frame();
frame.add(cap);
- jalview.bin.JalviewLite.addFrame(frame, "Alignment Properties: "
- + getTitle(), 400, 250);
+ jalview.bin.JalviewLite.addFrame(frame, MessageManager.formatMessage("label.alignment_properties", new String[]{getTitle()}),
+ 400, 250);
}
else if (source == overviewMenuItem)
{
CutAndPasteTransfer cap = new CutAndPasteTransfer(true, this);
Frame frame = new Frame();
frame.add(cap);
- jalview.bin.JalviewLite.addFrame(frame, "Cut & Paste Input", 500, 500);
+ jalview.bin.JalviewLite.addFrame(frame, MessageManager.getString("label.input_cut_paste"), 500, 500);
}
protected void outputText_actionPerformed(ActionEvent e)
Frame frame = new Frame();
frame.add(cap);
jalview.bin.JalviewLite.addFrame(frame,
- "Alignment output - " + e.getActionCommand(), 600, 500);
+ MessageManager.formatMessage("label.alignment_output_command", new String[]{e.getActionCommand()}),600, 500);
cap.setText(new AppletFormatAdapter().formatSequences(
e.getActionCommand(), viewport.getAlignment(),
viewport.showJVSuffix));
public void loadAnnotations()
{
CutAndPasteTransfer cap = new CutAndPasteTransfer(true, this);
- cap.setText("Paste your features / annotations / T-coffee score file here.");
+ cap.setText(MessageManager.getString("label.paste_features_annotations_Tcoffee_here"));
cap.setAnnotationImport();
Frame frame = new Frame();
frame.add(cap);
- jalview.bin.JalviewLite.addFrame(frame, "Paste Annotations ", 400, 300);
+ jalview.bin.JalviewLite.addFrame(frame, MessageManager.getString("action.paste_annotations"), 400, 300);
}
CutAndPasteTransfer cap = new CutAndPasteTransfer(false, this);
Frame frame = new Frame();
frame.add(cap);
- jalview.bin.JalviewLite.addFrame(frame, "Annotations", 600, 500);
+ jalview.bin.JalviewLite.addFrame(frame, MessageManager.getString("label.annotations"), 600, 500);
cap.setText(annotation);
}
}
Frame frame = new Frame();
frame.add(cap);
- jalview.bin.JalviewLite.addFrame(frame, "Features", 600, 500);
+ jalview.bin.JalviewLite.addFrame(frame, MessageManager.getString("label.features"), 600, 500);
cap.setText(features);
}
else
{
undoMenuItem.setEnabled(true);
CommandI command = (CommandI) viewport.historyList.peek();
- undoMenuItem.setLabel("Undo " + command.getDescription());
+ undoMenuItem.setLabel(MessageManager.formatMessage("label.undo_command", new String[]{command.getDescription()}));
}
else
{
undoMenuItem.setEnabled(false);
- undoMenuItem.setLabel("Undo");
+ undoMenuItem.setLabel(MessageManager.getString("action.undo"));
}
if (viewport.redoList.size() > 0)
redoMenuItem.setEnabled(true);
CommandI command = (CommandI) viewport.redoList.peek();
- redoMenuItem.setLabel("Redo " + command.getDescription());
+ redoMenuItem.setLabel(MessageManager.formatMessage("label.redo_command", new String[]{command.getDescription()}));
}
else
{
redoMenuItem.setEnabled(false);
- redoMenuItem.setLabel("Redo");
+ redoMenuItem.setLabel(MessageManager.getString("action.redo"));
}
}
viewport.getSelectionGroup());
}
- statusBar.setText("Removed " + trimRegion.getSize() + " columns.");
-
+ statusBar.setText(MessageManager.formatMessage("label.removed_columns", new String[]{Integer.valueOf(trimRegion.getSize()).toString()}));
addHistoryItem(trimRegion);
for (SequenceGroup sg : viewport.getAlignment().getGroups())
addHistoryItem(removeGapCols);
- statusBar.setText("Removed " + removeGapCols.getSize()
- + " empty columns.");
+ statusBar.setText(MessageManager.formatMessage("label.removed_empty_columns", new String[]{Integer.valueOf(removeGapCols.getSize()).toString()}));
// This is to maintain viewport position on first residue
// of first sequence
OverviewPanel overview = new OverviewPanel(alignPanel);
frame.add(overview);
// +50 must allow for applet frame window
- jalview.bin.JalviewLite.addFrame(frame, "Overview " + this.getTitle(),
+ jalview.bin.JalviewLite.addFrame(frame, MessageManager.formatMessage("label.overview_params", new String[]{this.getTitle()}),
overview.getPreferredSize().width,
overview.getPreferredSize().height + 50);
{
Frame frame = new Frame();
frame.add(new PairwiseAlignPanel(alignPanel));
- jalview.bin.JalviewLite.addFrame(frame, "Pairwise Alignment", 600,
+ jalview.bin.JalviewLite.addFrame(frame, MessageManager.getString("action.pairwise_alignment"), 600,
500);
}
}
void loadTree_actionPerformed()
{
CutAndPasteTransfer cap = new CutAndPasteTransfer(true, this);
- cap.setText("Paste your Newick tree file here.");
+ cap.setText(MessageManager.getString("label.paste_newick_tree_file"));
cap.setTreeImport();
Frame frame = new Frame();
frame.add(cap);
- jalview.bin.JalviewLite.addFrame(frame, "Paste Newick file ", 400, 300);
+ jalview.bin.JalviewLite.addFrame(frame, MessageManager.getString("label.paste_newick_file"), 400, 300);
}
public void loadTree(jalview.io.NewickFile tree, String treeFile)
{
- TreePanel tp = new TreePanel(alignPanel, treeFile, "From File - ", tree);
+ TreePanel tp = new TreePanel(alignPanel, treeFile, MessageManager.getString("label.load_tree_from_file"), tree);
jalview.bin.JalviewLite.addFrame(tp, treeFile, 600, 500);
addTreeMenuItem(tp, treeFile);
}
.sortByTree(viewport.getAlignment(), treePanel.getTree());
// addHistoryItem(new HistoryItem("Sort", viewport.alignment,
// HistoryItem.SORT));
- addHistoryItem(new OrderCommand("Order by " + title, oldOrder,
+ addHistoryItem(new OrderCommand(MessageManager.formatMessage("label.order_by_params", new String[]{title}), oldOrder,
viewport.getAlignment()));
alignPanel.paintAlignment(true);
}
// TODO: update this text for each release or centrally store it for
// lite and application
g.setFont(new Font("Helvetica", Font.BOLD, 14));
- g.drawString("JalviewLite - Release " + version, x, y += fh);
+ g.drawString(MessageManager.formatMessage("label.jalviewLite_release", new String[]{version}), x, y += fh);
g.setFont(new Font("Helvetica", Font.BOLD, 12));
- g.drawString("Build date: " + builddate, x, y += fh);
+ g.drawString(MessageManager.formatMessage("label.jaview_build_date", new String[]{builddate}), x, y += fh);
g.setFont(new Font("Helvetica", Font.PLAIN, 12));
g.drawString(
- "Authors: Jim Procter, Andrew Waterhouse, Jan Engelhardt, Lauren Lui,",
+ MessageManager.getString("label.jalview_authors_1"),
x, y += fh * 1.5);
- g.drawString("Michele Clamp, James Cuff, Steve Searle, David Martin & Geoff Barton.", x + 50, y += fh+8);
+ g.drawString(MessageManager.getString("label.jalview_authors_2"), x + 50, y += fh+8);
g.drawString(
- "Development managed by The Barton Group, University of Dundee, Scotland, UK.",
+ MessageManager.getString("label.jalview_dev_managers"),
x, y += fh);
g.drawString(
- "For help, see the FAQ at www.jalview.org and/or join the jalview-discuss@jalview.org mailing list",
+ MessageManager.getString("label.jalview_distribution_lists"),
x, y += fh);
- g.drawString("If you use Jalview, please cite:", x, y += fh + 8);
+ g.drawString(MessageManager.getString("label.jalview_please_cite"), x, y += fh + 8);
g.drawString(
- "Waterhouse, A.M., Procter, J.B., Martin, D.M.A, Clamp, M. and Barton, G. J. (2009)",
+ MessageManager.getString("label.jalview_cite_1_authors"),
x, y += fh);
g.drawString(
- "Jalview Version 2 - a multiple sequence alignment editor and analysis workbench",
+ MessageManager.getString("label.jalview_cite_1_title"),
x, y += fh);
- g.drawString("Bioinformatics doi: 10.1093/bioinformatics/btp033",
+ g.drawString(MessageManager.getString("label.jalview_cite_1_ref"),
x, y += fh);
}
}
Frame frame = new Frame();
frame.add(new AboutPanel(JalviewLite.getVersion(), JalviewLite
.getBuildDate()));
- jalview.bin.JalviewLite.addFrame(frame, "Jalview", 580, 220);
+ jalview.bin.JalviewLite.addFrame(frame, MessageManager.getString("label.jalview"), 580, 220);
}
MenuBar alignFrameMenuBar = new MenuBar();
- Menu fileMenu = new Menu("File");
+ Menu fileMenu = new Menu(MessageManager.getString("action.file"));
- MenuItem loadApplication = new MenuItem("View in Full Application");
+ MenuItem loadApplication = new MenuItem(MessageManager.getString("label.view_full_application"));
- MenuItem loadTree = new MenuItem("Load Associated Tree ...");
+ MenuItem loadTree = new MenuItem(MessageManager.getString("label.load_associated_tree"));
- MenuItem loadAnnotations = new MenuItem("Load Features/Annotations ...");
+ MenuItem loadAnnotations = new MenuItem(MessageManager.getString("label.load_features_annotations"));
- MenuItem outputFeatures = new MenuItem("Export Features ...");
+ MenuItem outputFeatures = new MenuItem(MessageManager.getString("label.export_features"));
- MenuItem outputAnnotations = new MenuItem("Export Annotations ...");
+ MenuItem outputAnnotations = new MenuItem(MessageManager.getString("label.export_annotations"));
- MenuItem closeMenuItem = new MenuItem("Close");
+ MenuItem closeMenuItem = new MenuItem(MessageManager.getString("action.close"));
- Menu editMenu = new Menu("Edit");
+ Menu editMenu = new Menu(MessageManager.getString("action.edit"));
- Menu viewMenu = new Menu("View");
+ Menu viewMenu = new Menu(MessageManager.getString("action.view"));
- Menu colourMenu = new Menu("Colour");
+ Menu colourMenu = new Menu(MessageManager.getString("action.colour"));
- Menu calculateMenu = new Menu("Calculate");
+ Menu calculateMenu = new Menu(MessageManager.getString("action.calculate"));
- MenuItem selectAllSequenceMenuItem = new MenuItem("Select all");
+ MenuItem selectAllSequenceMenuItem = new MenuItem(MessageManager.getString("action.select_all"));
- MenuItem deselectAllSequenceMenuItem = new MenuItem("Deselect All");
+ MenuItem deselectAllSequenceMenuItem = new MenuItem(MessageManager.getString("action.deselect_all"));
- MenuItem invertSequenceMenuItem = new MenuItem("Invert Selection");
+ MenuItem invertSequenceMenuItem = new MenuItem(MessageManager.getString("action.invert_selection"));
MenuItem remove2LeftMenuItem = new MenuItem();
CheckboxMenuItem displayNonconservedMenuItem = new CheckboxMenuItem();
- MenuItem alProperties = new MenuItem("Alignment Properties...");
+ MenuItem alProperties = new MenuItem(MessageManager.getString("label.alignment_props"));
MenuItem overviewMenuItem = new MenuItem();
selectAllSequenceMenuItem.addActionListener(this);
deselectAllSequenceMenuItem.addActionListener(this);
invertSequenceMenuItem.addActionListener(this);
- remove2LeftMenuItem.setLabel("Remove Left");
+ remove2LeftMenuItem.setLabel(MessageManager.getString("action.remove_left"));
remove2LeftMenuItem.addActionListener(this);
- remove2RightMenuItem.setLabel("Remove Right");
+ remove2RightMenuItem.setLabel(MessageManager.getString("action.remove_right"));
remove2RightMenuItem.addActionListener(this);
- removeGappedColumnMenuItem.setLabel("Remove Empty Columns");
+ removeGappedColumnMenuItem.setLabel(MessageManager.getString("action.remove_empty_columns"));
removeGappedColumnMenuItem.addActionListener(this);
- removeAllGapsMenuItem.setLabel("Remove All Gaps");
+ removeAllGapsMenuItem.setLabel(MessageManager.getString("action.remove_all_gaps"));
removeAllGapsMenuItem.addActionListener(this);
- viewBoxesMenuItem.setLabel("Boxes");
+ viewBoxesMenuItem.setLabel(MessageManager.getString("action.boxes"));
viewBoxesMenuItem.setState(true);
viewBoxesMenuItem.addItemListener(this);
- viewTextMenuItem.setLabel("Text");
+ viewTextMenuItem.setLabel(MessageManager.getString("action.text"));
viewTextMenuItem.setState(true);
viewTextMenuItem.addItemListener(this);
- sortPairwiseMenuItem.setLabel("by Pairwise Identity");
+ sortPairwiseMenuItem.setLabel(MessageManager.getString("action.by_pairwise_id"));
sortPairwiseMenuItem.addActionListener(this);
- sortIDMenuItem.setLabel("by ID");
+ sortIDMenuItem.setLabel(MessageManager.getString("action.by_id"));
sortIDMenuItem.addActionListener(this);
- sortLengthMenuItem.setLabel("by Length");
+ sortLengthMenuItem.setLabel(MessageManager.getString("action.by_length"));
sortLengthMenuItem.addActionListener(this);
- sortGroupMenuItem.setLabel("by Group");
+ sortGroupMenuItem.setLabel(MessageManager.getString("action.by_group"));
sortGroupMenuItem.addActionListener(this);
- removeRedundancyMenuItem.setLabel("Remove Redundancy...");
+ removeRedundancyMenuItem.setLabel(MessageManager.getString("action.remove_redundancy"));
removeRedundancyMenuItem.addActionListener(this);
- pairwiseAlignmentMenuItem.setLabel("Pairwise Alignments...");
+ pairwiseAlignmentMenuItem.setLabel(MessageManager.getString("action.pairwise_alignment"));
pairwiseAlignmentMenuItem.addActionListener(this);
- PCAMenuItem.setLabel("Principal Component Analysis");
+ PCAMenuItem.setLabel(MessageManager.getString("label.principal_component_analysis"));
PCAMenuItem.addActionListener(this);
averageDistanceTreeMenuItem
- .setLabel("Average Distance Using % Identity");
+ .setLabel(MessageManager.getString("label.average_distance_identity"));
averageDistanceTreeMenuItem.addActionListener(this);
- neighbourTreeMenuItem.setLabel("Neighbour Joining Using % Identity");
+ neighbourTreeMenuItem.setLabel(MessageManager.getString("label.neighbour_joining_identity"));
neighbourTreeMenuItem.addActionListener(this);
statusBar.setBackground(Color.white);
statusBar.setFont(new java.awt.Font("Verdana", 0, 11));
- statusBar.setText("Status bar");
- outputTextboxMenu.setLabel("Output to Textbox");
- clustalColour.setLabel("Clustalx");
+ statusBar.setText(MessageManager.getString("label.status_bar"));
+ outputTextboxMenu.setLabel(MessageManager.getString("label.out_to_textbox"));
+ clustalColour.setLabel(MessageManager.getString("label.clustalx"));
clustalColour.addActionListener(this);
- zappoColour.setLabel("Zappo");
+ zappoColour.setLabel(MessageManager.getString("label.zappo"));
zappoColour.addActionListener(this);
- taylorColour.setLabel("Taylor");
+ taylorColour.setLabel(MessageManager.getString("label.taylor"));
taylorColour.addActionListener(this);
- hydrophobicityColour.setLabel("Hydrophobicity");
+ hydrophobicityColour.setLabel(MessageManager.getString("label.hydrophobicity"));
hydrophobicityColour.addActionListener(this);
- helixColour.setLabel("Helix Propensity");
+ helixColour.setLabel(MessageManager.getString("label.helix_propensity"));
helixColour.addActionListener(this);
- strandColour.setLabel("Strand Propensity");
+ strandColour.setLabel(MessageManager.getString("label.strand_propensity"));
strandColour.addActionListener(this);
- turnColour.setLabel("Turn Propensity");
+ turnColour.setLabel(MessageManager.getString("label.turn_propensity"));
turnColour.addActionListener(this);
- buriedColour.setLabel("Buried Index");
+ buriedColour.setLabel(MessageManager.getString("label.buried_index"));
buriedColour.addActionListener(this);
- purinePyrimidineColour.setLabel("Purine/Pyrimidine");
+ purinePyrimidineColour.setLabel(MessageManager.getString("label.purine_pyrimidine"));
purinePyrimidineColour.addActionListener(this);
- RNAHelixColour.setLabel("by RNA Helices");
+ RNAHelixColour.setLabel(MessageManager.getString("action.by_rna_helixes"));
RNAHelixColour.addActionListener(this);
- userDefinedColour.setLabel("User Defined...");
+ userDefinedColour.setLabel(MessageManager.getString("action.user_defined"));
userDefinedColour.addActionListener(this);
- PIDColour.setLabel("Percentage Identity");
+ PIDColour.setLabel(MessageManager.getString("label.percentage_identity"));
PIDColour.addActionListener(this);
- BLOSUM62Colour.setLabel("BLOSUM62 Score");
+ BLOSUM62Colour.setLabel(MessageManager.getString("label.blosum62_score"));
BLOSUM62Colour.addActionListener(this);
- tcoffeeColour.setLabel("T-Coffee Scores");
+ tcoffeeColour.setLabel(MessageManager.getString("label.tcoffee_scores"));
tcoffeeColour.setEnabled(false); // it will enabled only if a score file is
// provided
tcoffeeColour.addActionListener(this);
avDistanceTreeBlosumMenuItem
- .setLabel("Average Distance Using BLOSUM62");
+ .setLabel(MessageManager.getString("label.average_distance_bloslum62"));
avDistanceTreeBlosumMenuItem.addActionListener(this);
- njTreeBlosumMenuItem.setLabel("Neighbour Joining Using BLOSUM62");
+ njTreeBlosumMenuItem.setLabel(MessageManager.getString("label.neighbour_blosum62"));
njTreeBlosumMenuItem.addActionListener(this);
- annotationPanelMenuItem.setLabel("Show Annotations");
+ annotationPanelMenuItem.setLabel(MessageManager.getString("label.show_annotations"));
annotationPanelMenuItem.addItemListener(this);
- colourTextMenuItem.setLabel("Colour Text");
+ colourTextMenuItem.setLabel(MessageManager.getString("label.colour_text"));
colourTextMenuItem.addItemListener(this);
- displayNonconservedMenuItem.setLabel("Show nonconserved");
+ displayNonconservedMenuItem.setLabel(MessageManager.getString("label.show_non_conversed"));
displayNonconservedMenuItem.addItemListener(this);
alProperties.addActionListener(this);
- overviewMenuItem.setLabel("Overview Window");
+ overviewMenuItem.setLabel(MessageManager.getString("label.overview_window"));
overviewMenuItem.addActionListener(this);
undoMenuItem.setEnabled(false);
- undoMenuItem.setLabel("Undo");
+ undoMenuItem.setLabel(MessageManager.getString("action.undo"));
undoMenuItem.addActionListener(this);
redoMenuItem.setEnabled(false);
- redoMenuItem.setLabel("Redo");
+ redoMenuItem.setLabel(MessageManager.getString("action.redo"));
redoMenuItem.addActionListener(this);
- conservationMenuItem.setLabel("by Conservation");
+ conservationMenuItem.setLabel(MessageManager.getString("action.by_conservation"));
conservationMenuItem.addItemListener(this);
- noColourmenuItem.setLabel("None");
+ noColourmenuItem.setLabel(MessageManager.getString("label.none"));
noColourmenuItem.addActionListener(this);
- wrapMenuItem.setLabel("Wrap");
+ wrapMenuItem.setLabel(MessageManager.getString("action.wrap"));
wrapMenuItem.addItemListener(this);
- renderGapsMenuItem.setLabel("Show Gaps");
+ renderGapsMenuItem.setLabel(MessageManager.getString("action.show_gaps"));
renderGapsMenuItem.setState(true);
renderGapsMenuItem.addItemListener(this);
- findMenuItem.setLabel("Find...");
+ findMenuItem.setLabel(MessageManager.getString("action.find"));
findMenuItem.addActionListener(this);
- abovePIDThreshold.setLabel("Above Identity Threshold");
+ abovePIDThreshold.setLabel(MessageManager.getString("label.above_identity_threshold"));
abovePIDThreshold.addItemListener(this);
- nucleotideColour.setLabel("Nucleotide");
+ nucleotideColour.setLabel(MessageManager.getString("label.nucleotide"));
nucleotideColour.addActionListener(this);
- deleteGroups.setLabel("Undefine Groups");
+ deleteGroups.setLabel(MessageManager.getString("action.undefine_groups"));
deleteGroups.addActionListener(this);
- grpsFromSelection.setLabel("Make Groups For Selection");
+ grpsFromSelection.setLabel(MessageManager.getString("action.make_groups_selection"));
grpsFromSelection.addActionListener(this);
- createGroup.setLabel("Create Group");
- unGroup.setLabel("Remove Group");
- copy.setLabel("Copy");
+ createGroup.setLabel(MessageManager.getString("action.create_group"));
+ unGroup.setLabel(MessageManager.getString("action.remove_group"));
+ copy.setLabel(MessageManager.getString("action.copy"));
copy.addActionListener(this);
- cut.setLabel("Cut");
+ cut.setLabel(MessageManager.getString("action.cut"));
cut.addActionListener(this);
- delete.setLabel("Delete");
+ delete.setLabel(MessageManager.getString("action.delete"));
delete.addActionListener(this);
- pasteMenu.setLabel("Paste");
- pasteNew.setLabel("To New Alignment");
+ pasteMenu.setLabel(MessageManager.getString("action.paste"));
+ pasteNew.setLabel(MessageManager.getString("label.to_new_alignment"));
pasteNew.addActionListener(this);
- pasteThis.setLabel("Add To This Alignment");
+ pasteThis.setLabel(MessageManager.getString("label.to_this_alignment"));
pasteThis.addActionListener(this);
- applyToAllGroups.setLabel("Apply Colour To All Groups");
+ applyToAllGroups.setLabel(MessageManager.getString("label.apply_colour_to_all_groups"));
applyToAllGroups.setState(true);
applyToAllGroups.addItemListener(this);
- font.setLabel("Font...");
+ font.setLabel(MessageManager.getString("action.font"));
font.addActionListener(this);
- scaleAbove.setLabel("Scale Above");
+ scaleAbove.setLabel(MessageManager.getString("action.scale_above"));
scaleAbove.setState(true);
scaleAbove.setEnabled(false);
scaleAbove.addItemListener(this);
scaleLeft.setEnabled(false);
scaleLeft.setState(true);
- scaleLeft.setLabel("Scale Left");
+ scaleLeft.setLabel(MessageManager.getString("action.scale_left"));
scaleLeft.addItemListener(this);
scaleRight.setEnabled(false);
scaleRight.setState(true);
- scaleRight.setLabel("Scale Right");
+ scaleRight.setLabel(MessageManager.getString("action.scale_right"));
scaleRight.addItemListener(this);
- modifyPID.setLabel("Modify Identity Threshold...");
+ modifyPID.setLabel(MessageManager.getString("label.modify_identity_thereshold"));
modifyPID.addActionListener(this);
- modifyConservation.setLabel("Modify Conservation Threshold...");
+ modifyConservation.setLabel(MessageManager.getString("label.modify_conservation_thereshold"));
modifyConservation.addActionListener(this);
- sortByTreeMenu.setLabel("By Tree Order");
- sort.setLabel("Sort");
- calculate.setLabel("Calculate Tree");
+ sortByTreeMenu.setLabel(MessageManager.getString("action.by_tree_order"));
+ sort.setLabel(MessageManager.getString("action.sort"));
+ calculate.setLabel(MessageManager.getString("action.calculate_tree"));
autoCalculate.addItemListener(this);
sortByTree.addItemListener(this);
- inputText.setLabel("Input from textbox");
+ inputText.setLabel(MessageManager.getString("label.input_from_textbox"));
inputText.addActionListener(this);
- centreColumnLabelFlag.setLabel("Centre column labels");
+ centreColumnLabelFlag.setLabel(MessageManager.getString("label.centre_column_labels"));
centreColumnLabelFlag.addItemListener(this);
- followMouseOverFlag.setLabel("Automatic Scrolling");
+ followMouseOverFlag.setLabel(MessageManager.getString("label.automatic_scrolling"));
followMouseOverFlag.addItemListener(this);
- helpMenu.setLabel("Help");
- documentation.setLabel("Documentation");
+ helpMenu.setLabel(MessageManager.getString("action.help"));
+ documentation.setLabel(MessageManager.getString("label.documentation"));
documentation.addActionListener(this);
- about.setLabel("About...");
+ about.setLabel(MessageManager.getString("label.about"));
about.addActionListener(this);
seqLimits.setState(true);
- seqLimits.setLabel("Show Sequence Limits");
+ seqLimits.setLabel(MessageManager.getString("label.show_sequence_limits"));
seqLimits.addItemListener(this);
- featureSettings.setLabel("Feature Settings...");
+ featureSettings.setLabel(MessageManager.getString("label.feature_settings"));
featureSettings.addActionListener(this);
- sequenceFeatures.setLabel("Sequence Features");
+ sequenceFeatures.setLabel(MessageManager.getString("label.sequence_features"));
sequenceFeatures.addItemListener(this);
sequenceFeatures.setState(false);
- annotationColour.setLabel("by Annotation...");
+ annotationColour.setLabel(MessageManager.getString("action.by_annotation"));
annotationColour.addActionListener(this);
- invertSequenceMenuItem.setLabel("Invert Sequence Selection");
- invertColSel.setLabel("Invert Column Selection");
- menu1.setLabel("Show");
- showColumns.setLabel("All Columns ");
- showSeqs.setLabel("All Sequences");
- menu2.setLabel("Hide");
- hideColumns.setLabel("Selected Columns");
- hideSequences.setLabel("Selected Sequences");
- hideAllButSelection.setLabel("All but Selected Region (Shift+Ctrl+H)");
- hideAllSelection.setLabel("Selected Region");
- showAllHidden.setLabel("All Sequences and Columns");
- showGroupConsensus.setLabel("Group Consensus");
- showGroupConservation.setLabel("Group Conservation");
- showConsensusHistogram.setLabel("Show Consensus Histogram");
- showSequenceLogo.setLabel("Show Consensus Logo");
- normSequenceLogo.setLabel("Normalise Consensus Logo");
- applyAutoAnnotationSettings.setLabel("Apply to all groups");
+ invertSequenceMenuItem.setLabel(MessageManager.getString("action.invert_sequence_selection"));
+ invertColSel.setLabel(MessageManager.getString("action.invert_column_selection"));
+ menu1.setLabel(MessageManager.getString("action.show"));
+ showColumns.setLabel(MessageManager.getString("label.all_columns"));
+ showSeqs.setLabel(MessageManager.getString("label.all_sequences"));
+ menu2.setLabel(MessageManager.getString("aciton.hide"));
+ hideColumns.setLabel(MessageManager.getString("label.selected_columns"));
+ hideSequences.setLabel(MessageManager.getString("label.selected_sequences"));
+ hideAllButSelection.setLabel(MessageManager.getString("label.all_but_selected_region"));
+ hideAllSelection.setLabel(MessageManager.getString("label.selected_region"));
+ showAllHidden.setLabel(MessageManager.getString("label.all_sequences_columns"));
+ showGroupConsensus.setLabel(MessageManager.getString("label.group_consensus"));
+ showGroupConservation.setLabel(MessageManager.getString("label.group_conservation"));
+ showConsensusHistogram.setLabel(MessageManager.getString("label.show_consensus_histogram"));
+ showSequenceLogo.setLabel(MessageManager.getString("label.show_consensus_logo"));
+ normSequenceLogo.setLabel(MessageManager.getString("label.norm_consensus_logo"));
+ applyAutoAnnotationSettings.setLabel(MessageManager.getString("label.apply_all_groups"));
applyAutoAnnotationSettings.setState(true);
- autoAnnMenu.setLabel("Autocalculated Annotation");
+ autoAnnMenu.setLabel(MessageManager.getString("label.autocalculated_annotation"));
invertColSel.addActionListener(this);
showColumns.addActionListener(this);
normSequenceLogo.addItemListener(this);
applyAutoAnnotationSettings.addItemListener(this);
- formatMenu.setLabel("Format");
- selectMenu.setLabel("Select");
- newView.setLabel("New View");
+ formatMenu.setLabel(MessageManager.getString("action.format"));
+ selectMenu.setLabel(MessageManager.getString("action.select"));
+ newView.setLabel(MessageManager.getString("action.new_view"));
newView.addActionListener(this);
alignFrameMenuBar.add(fileMenu);
alignFrameMenuBar.add(editMenu);
import jalview.datamodel.*;
import jalview.schemes.*;
+import jalview.util.MessageManager;
public class AnnotationColourChooser extends Panel implements
ActionListener, AdjustmentListener, ItemListener, MouseListener
frame = new Frame();
frame.add(this);
- jalview.bin.JalviewLite.addFrame(frame, "Colour by Annotation", 560,
+ jalview.bin.JalviewLite.addFrame(frame, MessageManager.getString("label.colour_by_annotation"), 560,
175);
validate();
}
private void jbInit() throws Exception
{
minColour.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));
- minColour.setLabel("Min Colour");
+ minColour.setLabel(MessageManager.getString("label.min_colour"));
minColour.addActionListener(this);
maxColour.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));
- maxColour.setLabel("Max Colour");
+ maxColour.setLabel(MessageManager.getString("label.max_colour"));
maxColour.addActionListener(this);
thresholdIsMin.addItemListener(this);
- ok.setLabel("OK");
+ ok.setLabel(MessageManager.getString("action.ok"));
ok.addActionListener(this);
- cancel.setLabel("Cancel");
+ cancel.setLabel(MessageManager.getString("action.cancel"));
cancel.addActionListener(this);
- defColours.setLabel("Defaults");
+ defColours.setLabel(MessageManager.getString("action.set_defaults"));
defColours.addActionListener(this);
annotations.addItemListener(this);
thresholdValue.setEnabled(false);
thresholdValue.setColumns(5);
currentColours.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));
- currentColours.setLabel("Use Original Colours");
+ currentColours.setLabel(MessageManager.getString("label.use_original_colours"));
currentColours.addItemListener(this);
thresholdIsMin.setBackground(Color.white);
- thresholdIsMin.setLabel("Threshold is min/max");
+ thresholdIsMin.setLabel(MessageManager.getString("label.threshold_minmax"));
this.setLayout(borderLayout1);
import java.awt.event.*;
import jalview.datamodel.*;
+import jalview.util.MessageManager;
import jalview.util.ParseHtmlBodyAndLinks;
public class AnnotationLabels extends Panel implements ActionListener,
if ((evt.getModifiers() & InputEvent.BUTTON3_MASK) == InputEvent.BUTTON3_MASK)
{
- PopupMenu popup = new PopupMenu("Annotations");
+ PopupMenu popup = new PopupMenu(MessageManager.getString("label.annotations"));
MenuItem item = new MenuItem(ADDNEW);
item.addActionListener(this);
if (!av.wrapAlignment && ((aa == null) || (aa.length < 1)))
{
g.setColor(Color.black);
- g.drawString("Right click", 2, 8);
- g.drawString("to add annotation", 2, 18);
+ g.drawString(MessageManager.getString("label.right_click"), 2, 8);
+ g.drawString(MessageManager.getString("label.to_add_annotation"), 2, 18);
}
}
}
import jalview.datamodel.*;
import jalview.renderer.AnnotationRenderer;
import jalview.renderer.AwtRenderPanelI;
+import jalview.util.MessageManager;
public class AnnotationPanel extends Panel implements AwtRenderPanelI,
AdjustmentListener, ActionListener, MouseListener,
return;
}
- PopupMenu pop = new PopupMenu("Structure type");
+ PopupMenu pop = new PopupMenu(MessageManager.getString("label.structure_type"));
MenuItem item;
/*
* Just display the needed structure options
g.setColor(Color.black);
if (av.validCharWidth)
{
- g.drawString("Alignment has no annotations", 20, 15);
+ g.drawString(MessageManager.getString("label.alignment_has_no_annotations"), 20, 15);
}
return;
import jalview.io.*;
import jalview.schemes.*;
+import jalview.util.MessageManager;
public class AppletJmol extends EmbmenuFrame implements
// StructureListener,
KeyListener, ActionListener, ItemListener, SequenceStructureBinding
{
- Menu fileMenu = new Menu("File");
+ Menu fileMenu = new Menu(MessageManager.getString("action.file"));
- Menu viewMenu = new Menu("View");
+ Menu viewMenu = new Menu(MessageManager.getString("action.view"));
- Menu coloursMenu = new Menu("Colours");
+ Menu coloursMenu = new Menu(MessageManager.getString("action.colour"));
- Menu chainMenu = new Menu("Show Chain");
+ Menu chainMenu = new Menu(MessageManager.getString("action.show_chain"));
- Menu helpMenu = new Menu("Help");
+ Menu helpMenu = new Menu(MessageManager.getString("action.help"));
- MenuItem mappingMenuItem = new MenuItem("View Mapping");
+ MenuItem mappingMenuItem = new MenuItem(MessageManager.getString("label.view_mapping"));
- CheckboxMenuItem seqColour = new CheckboxMenuItem("By Sequence", true);
+ CheckboxMenuItem seqColour = new CheckboxMenuItem(MessageManager.getString("action.by_sequence"), true);
- CheckboxMenuItem jmolColour = new CheckboxMenuItem("Using Jmol", false);
+ CheckboxMenuItem jmolColour = new CheckboxMenuItem(MessageManager.getString("action.using_jmol"), false);
- MenuItem chain = new MenuItem("By Chain");
+ MenuItem chain = new MenuItem(MessageManager.getString("action.by_chain"));
- MenuItem charge = new MenuItem("Charge & Cysteine");
+ MenuItem charge = new MenuItem(MessageManager.getString("label.charge_cysteine"));
- MenuItem zappo = new MenuItem("Zappo");
+ MenuItem zappo = new MenuItem(MessageManager.getString("label.zappo"));
- MenuItem taylor = new MenuItem("Taylor");
+ MenuItem taylor = new MenuItem(MessageManager.getString("label.taylor"));
- MenuItem hydro = new MenuItem("Hydrophobicity");
+ MenuItem hydro = new MenuItem(MessageManager.getString("label.hydrophobicity"));
- MenuItem helix = new MenuItem("Helix Propensity");
+ MenuItem helix = new MenuItem(MessageManager.getString("label.helix_propensity"));
- MenuItem strand = new MenuItem("Strand Propensity");
+ MenuItem strand = new MenuItem(MessageManager.getString("label.strand_propensity"));
- MenuItem turn = new MenuItem("Turn Propensity");
+ MenuItem turn = new MenuItem(MessageManager.getString("label.turn_propensity"));
- MenuItem buried = new MenuItem("Buried Index");
+ MenuItem buried = new MenuItem(MessageManager.getString("label.buried_index"));
- MenuItem purinepyrimidine = new MenuItem("Purine/Pyrimidine");
+ MenuItem purinepyrimidine = new MenuItem(MessageManager.getString("label.purine_pyrimidine"));
- MenuItem user = new MenuItem("User Defined Colours");
+ MenuItem user = new MenuItem(MessageManager.getString("label.user_defined_colours"));
- MenuItem jmolHelp = new MenuItem("Jmol Help");
+ MenuItem jmolHelp = new MenuItem(MessageManager.getString("label.jmol_help"));
Panel scriptWindow;
{
chainMenu.removeAll();
- MenuItem menuItem = new MenuItem("All");
+ MenuItem menuItem = new MenuItem(MessageManager.getString("label.all"));
menuItem.addActionListener(this);
chainMenu.add(menuItem);
.println("Out of memory when trying to create dialog box with sequence-structure mapping.");
return;
}
- jalview.bin.JalviewLite.addFrame(frame, "PDB - Sequence Mapping",
+ jalview.bin.JalviewLite.addFrame(frame, MessageManager.getString("label.pdb_sequence_mapping"),
550, 600);
}
else if (evt.getSource() == charge)
g.fillRect(0, 0, currentSize.width, currentSize.height);
g.setColor(Color.white);
g.setFont(new Font("Verdana", Font.BOLD, 14));
- g.drawString("Retrieving PDB data....", 20, currentSize.height / 2);
+ g.drawString(MessageManager.getString("label.retrieving_pdb_data"), 20, currentSize.height / 2);
}
else
{
import jalview.datamodel.*;
import jalview.io.*;
import jalview.schemes.TCoffeeColourScheme;
+import jalview.util.MessageManager;
public class CutAndPasteTransfer extends Panel implements ActionListener,
MouseListener
public void setPDBImport(Sequence seq)
{
this.seq = seq;
- accept.setLabel("Accept");
+ accept.setLabel(MessageManager.getString("action.accept"));
addSequences.setVisible(false);
pdbImport = true;
}
public void setTreeImport()
{
treeImport = true;
- accept.setLabel("Accept");
+ accept.setLabel(MessageManager.getString("action.accept"));
addSequences.setVisible(false);
}
public void setAnnotationImport()
{
annotationImport = true;
- accept.setLabel("Accept");
+ accept.setLabel(MessageManager.getString("action.accept"));
addSequences.setVisible(false);
}
{
// TODO: JAL-1102 - should have a warning message in dialog, not simply
// overwrite the broken input data with the exception
- textarea.setText("Could not parse Newick file!\n" + ex);
+ textarea.setText(MessageManager.formatMessage("label.could_not_parse_newick_file", new String[]{ex.getMessage()}));
return;
}
}
alignFrame.changeColour(new TCoffeeColourScheme(
alignFrame.viewport.getAlignment()));
alignFrame.statusBar
- .setText("Successfully pasted T-Coffee scores to alignment.");
+ .setText(MessageManager.getString("label.successfully_pasted_tcoffee_scores_to_alignment"));
}
else
{
// file valid but didn't get added to alignment for some reason
- alignFrame.statusBar.setText("Failed to add T-Coffee scores: "
- + (tcf.getWarningMessage() != null ? tcf
- .getWarningMessage() : ""));
+ alignFrame.statusBar.setText(MessageManager.formatMessage("label.failed_add_tcoffee_scores", new String[]{(tcf.getWarningMessage() != null ? tcf.getWarningMessage() : "")}));
}
}
else
{
AlignFrame af = new AlignFrame(al, alignFrame.viewport.applet,
"Cut & Paste input - " + format, false);
- af.statusBar.setText("Successfully pasted alignment file");
+ af.statusBar.setText(MessageManager.getString("label.successfully_pasted_annotation_to_alignment"));
}
else
{
alignFrame.addSequences(al.getSequencesArray());
alignFrame.statusBar
- .setText("Successfully pasted alignment file");
+ .setText(MessageManager.getString("label.successfully_pasted_alignment_file"));
}
}
}
private void jbInit() throws Exception
{
textarea.setFont(new java.awt.Font("Monospaced", Font.PLAIN, 10));
- textarea.setText("Paste your alignment file here");
+ textarea.setText(MessageManager.getString("label.paste_your_alignment_file"));
textarea.addMouseListener(this);
this.setLayout(borderLayout1);
accept.addActionListener(this);
public void mousePressed(MouseEvent evt)
{
- if (textarea.getText().startsWith("Paste your"))
+ if (textarea.getText().startsWith(MessageManager.getString("label.paste_your")))
{
textarea.setText("");
}
import jalview.datamodel.*;
import jalview.schemes.*;
+import jalview.util.MessageManager;
public class FeatureColourChooser extends Panel implements ActionListener,
AdjustmentListener, ItemListener, MouseListener
private void jbInit() throws Exception
{
- Label minLabel = new Label("Min:"), maxLabel = new Label("Max:");
+ Label minLabel = new Label(MessageManager.getString("label.min")), maxLabel = new Label(MessageManager.getString("label.max"));
minLabel.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));
maxLabel.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));
// minColour.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));
jPanel3.setBackground(Color.white);
colourFromLabel.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));
- colourFromLabel.setLabel("Colour by Label");
+ colourFromLabel.setLabel(MessageManager.getString("label.colour_by_label"));
colourFromLabel.setSize(new Dimension(139, 22));
// threshold.setBounds(new Rectangle(11, 3, 139, 22));
thresholdIsMin.setBackground(Color.white);
- thresholdIsMin.setLabel("Threshold is min/max");
+ thresholdIsMin.setLabel(MessageManager.getString("label.threshold_minmax"));
thresholdIsMin.setSize(new Dimension(135, 23));
// thresholdIsMin.setBounds(new Rectangle(328, 3, 135, 23));
jPanel1.add(minLabel);
import jalview.datamodel.*;
import jalview.schemes.AnnotationColourGradient;
import jalview.schemes.GraduatedColor;
+import jalview.util.MessageManager;
/**
* DOCUMENT ME!
g.setColor(Color.black);
Font f = new Font("Verdana", Font.PLAIN, 10);
g.setFont(f);
- g.drawString("Label", 0, 0);
+ g.drawString(MessageManager.getString("label.label"), 0, 0);
}
else
{
}
else
{
- dialog.ok.setLabel("Amend");
+ dialog.ok.setLabel(MessageManager.getString("label.amend"));
dialog.buttonPanel.add(deleteButton, 1);
deleteButton.addActionListener(new ActionListener()
{
import jalview.datamodel.*;
import jalview.schemes.AnnotationColourGradient;
import jalview.schemes.GraduatedColor;
+import jalview.util.MessageManager;
public class FeatureSettings extends Panel implements ItemListener,
MouseListener, MouseMotionListener, ActionListener,
height = Math.max(200, height);
height = Math.min(400, height);
int width = 300;
- jalview.bin.JalviewLite.addFrame(frame, "Feature Settings", width,
+ jalview.bin.JalviewLite.addFrame(frame, MessageManager.getString("label.feature_settings"), width,
height);
}
public void paint(Graphics g)
{
g.setColor(Color.black);
- g.drawString("No Features added to this alignment!!", 10, 20);
- g.drawString("(Features can be added from searches or", 10, 40);
- g.drawString("from Jalview / GFF features files)", 10, 60);
+ g.drawString(MessageManager.getString("label.no_features_added_to_this_alignment"), 10, 20);
+ g.drawString(MessageManager.getString("label.features_can_be_added_from_searches_1"), 10, 40);
+ g.drawString(MessageManager.getString("label.features_can_be_added_from_searches_2"), 10, 60);
}
protected void popupSort(final MyCheckbox check, final Hashtable minmax,
{
final String type = check.type;
final Object typeCol = fr.getFeatureStyle(type);
- java.awt.PopupMenu men = new PopupMenu("Settings for " + type);
- java.awt.MenuItem scr = new MenuItem("Sort by Score");
+ java.awt.PopupMenu men = new PopupMenu(MessageManager.formatMessage("label.settings_for_type", new String[]{type}));
+ java.awt.MenuItem scr = new MenuItem(MessageManager.getString("label.sort_by_score"));
men.add(scr);
final FeatureSettings me = this;
scr.addActionListener(new ActionListener()
}
});
- MenuItem dens = new MenuItem("Sort by Density");
+ MenuItem dens = new MenuItem(MessageManager.getString("label.sort_by_density"));
dens.addActionListener(new ActionListener()
{
import java.awt.event.*;
import jalview.datamodel.*;
+import jalview.util.MessageManager;
public class Finder extends Panel implements ActionListener
{
this.ap = ap;
frame = new Frame();
frame.add(this);
- jalview.bin.JalviewLite.addFrame(frame, "Find", 340, 120);
+ jalview.bin.JalviewLite.addFrame(frame, MessageManager.getString("action.find"), 340, 120);
frame.repaint();
frame.addWindowListener(new WindowAdapter()
{
// 'SelectRegion' selection
if (!haveResults)
{
- ap.alignFrame.statusBar.setText("Finished searching.");
+ ap.alignFrame.statusBar.setText(MessageManager.getString("label.finished_searching"));
resIndex = -1;
seqIndex = 0;
}
{
message += searchResults.getSize() + " subsequence matches.";
}
- ap.alignFrame.statusBar.setText("Search results: " + searchString
- + " : " + message);
+ ap.alignFrame.statusBar.setText(MessageManager.formatMessage("label.search_results", new String[] {searchString, message}));
}
else
{
// TODO: indicate sequence and matching position in status bar
- ap.alignFrame.statusBar.setText("Found match for " + searchString);
+ ap.alignFrame.statusBar.setText(MessageManager.formatMessage("label.found_match_for", new String[]{searchString}));
}
}
}
private void jbInit() throws Exception
{
jLabel1.setFont(new java.awt.Font("Verdana", 0, 12));
- jLabel1.setText("Find");
+ jLabel1.setText(MessageManager.getString("action.find"));
jLabel1.setBounds(new Rectangle(3, 30, 34, 15));
this.setLayout(null);
textfield.setFont(new java.awt.Font("Verdana", Font.PLAIN, 10));
});
textfield.addActionListener(this);
findAll.setFont(new java.awt.Font("Verdana", Font.PLAIN, 10));
- findAll.setLabel("Find all");
+ findAll.setLabel(MessageManager.getString("action.find_all"));
findAll.addActionListener(this);
findNext.setEnabled(false);
findNext.setFont(new java.awt.Font("Verdana", Font.PLAIN, 10));
- findNext.setLabel("Find Next");
+ findNext.setLabel(MessageManager.getString("action.find_next"));
findNext.addActionListener(this);
jPanel1.setBounds(new Rectangle(180, 5, 141, 64));
jPanel1.setLayout(gridLayout1);
gridLayout1.setVgap(2);
createNewGroup.setEnabled(false);
createNewGroup.setFont(new java.awt.Font("Verdana", Font.PLAIN, 10));
- createNewGroup.setLabel("New Feature");
+ createNewGroup.setLabel(MessageManager.getString("label.new_feature"));
createNewGroup.addActionListener(this);
- caseSensitive.setLabel("Match Case");
+ caseSensitive.setLabel(MessageManager.getString("label.match_case"));
caseSensitive.setBounds(new Rectangle(40, 49, 126, 23));
jPanel1.add(findNext, null);
jPanel1.add(findAll, null);
*/
package jalview.appletgui;
+import jalview.util.MessageManager;
+
import java.awt.*;
import java.awt.event.*;
Frame frame = new Frame();
this.frame = frame;
frame.add(this);
- jalview.bin.JalviewLite.addFrame(frame, "Change Font", 440, 115);
+ jalview.bin.JalviewLite.addFrame(frame, MessageManager.getString("action.change_font"), 440, 115);
init = false;
}
{
label1.setFont(new java.awt.Font("Verdana", 0, 11));
label1.setAlignment(Label.RIGHT);
- label1.setText("Font: ");
+ label1.setText(MessageManager.getString("label.font"));
this.setLayout(borderLayout4);
fontSize.setFont(new java.awt.Font("Verdana", 0, 11));
fontSize.addItemListener(this);
fontStyle.addItemListener(this);
label2.setAlignment(Label.RIGHT);
label2.setFont(new java.awt.Font("Verdana", 0, 11));
- label2.setText("Size: ");
+ label2.setText(MessageManager.getString("label.size"));
label3.setAlignment(Label.RIGHT);
label3.setFont(new java.awt.Font("Verdana", 0, 11));
- label3.setText("Style: ");
+ label3.setText(MessageManager.getString("label.style"));
fontName.setFont(new java.awt.Font("Verdana", 0, 11));
fontName.addItemListener(this);
ok.setFont(new java.awt.Font("Verdana", 0, 11));
- ok.setLabel("OK");
+ ok.setLabel(MessageManager.getString("action.ok"));
ok.addActionListener(this);
cancel.setFont(new java.awt.Font("Verdana", 0, 11));
- cancel.setLabel("Cancel");
+ cancel.setLabel(MessageManager.getString("action.cancel"));
cancel.addActionListener(this);
this.setBackground(Color.white);
panel1.setLayout(borderLayout1);
import java.awt.event.*;
import jalview.datamodel.*;
+import jalview.util.MessageManager;
import jalview.viewmodel.PCAModel;
public class PCAPanel extends EmbmenuFrame implements Runnable,
embedMenuIfNeeded(rc);
add(rc, BorderLayout.CENTER);
- jalview.bin.JalviewLite.addFrame(this, "Principal component analysis",
+ jalview.bin.JalviewLite.addFrame(this, MessageManager.getString("label.principal_component_analysis"),
475, 400);
Thread worker = new Thread(this);
CutAndPasteTransfer cap = new CutAndPasteTransfer(false, null);
Frame frame = new Frame();
frame.add(cap);
- jalview.bin.JalviewLite.addFrame(frame, "PCA details", 500, 500);
+ jalview.bin.JalviewLite.addFrame(frame, MessageManager.getString("label.pca_details"), 500, 500);
cap.setText(pcaModel.getDetails());
}
xCombobox.setFont(new java.awt.Font("Verdana", 0, 12));
xCombobox.addItemListener(this);
resetButton.setFont(new java.awt.Font("Verdana", 0, 12));
- resetButton.setLabel("Reset");
+ resetButton.setLabel(MessageManager.getString("action.reset"));
resetButton.addActionListener(this);
this.setMenuBar(menuBar1);
- menu1.setLabel("File");
- menu2.setLabel("View");
- calcSettings.setLabel("Change Parameters");
- labels.setLabel("Labels");
+ menu1.setLabel(MessageManager.getString("action.file"));
+ menu2.setLabel(MessageManager.getString("action.view"));
+ calcSettings.setLabel(MessageManager.getString("action.change_params"));
+ labels.setLabel(MessageManager.getString("label.labels"));
labels.addItemListener(this);
- values.setLabel("Output Values...");
+ values.setLabel(MessageManager.getString("label.output_values"));
values.addActionListener(this);
- inputData.setLabel("Input Data...");
- nuclSetting.setLabel("Nucleotide matrix");
+ inputData.setLabel(MessageManager.getString("label.input_data"));
+ nuclSetting.setLabel(MessageManager.getString("label.nucleotide_matrix"));
nuclSetting.addItemListener(this);
- protSetting.setLabel("Protein matrix");
+ protSetting.setLabel(MessageManager.getString("label.protein_matrix"));
protSetting.addItemListener(this);
this.add(jPanel2, BorderLayout.SOUTH);
jPanel2.add(jLabel1, null);
import jalview.analysis.*;
import jalview.datamodel.*;
+import jalview.util.MessageManager;
public class PairwiseAlignPanel extends Panel implements ActionListener
{
textarea.setFont(new java.awt.Font("Monospaced", 0, 12));
textarea.setText("");
viewInEditorButton.setFont(new java.awt.Font("Verdana", 0, 12));
- viewInEditorButton.setLabel("View in alignment editor");
+ viewInEditorButton.setLabel(MessageManager.getString("label.view_alignment_editor"));
viewInEditorButton.addActionListener(this);
this.add(scrollPane, BorderLayout.CENTER);
scrollPane.add(textarea);
import jalview.analysis.AlignSeq;
import jalview.commands.*;
import jalview.datamodel.*;
+import jalview.util.MessageManager;
public class RedundancyPanel extends SliderPanel implements Runnable,
WindowListener
applyButton.setVisible(true);
allGroupsCheck.setVisible(false);
- label.setText("Enter the redundancy threshold");
+ label.setText(MessageManager.getString("label.enter_redundancy_threshold"));
valueField.setText("100");
slider.setVisibleAmount(1);
frame = new Frame();
frame.add(this);
jalview.bin.JalviewLite.addFrame(frame,
- "Redundancy threshold selection", 400, 100);
+ MessageManager.getString("label.redundancy_threshold_selection"), 400, 100);
frame.addWindowListener(this);
*/
public void run()
{
- label.setText("Calculating....");
+ label.setText(MessageManager.getString("label.calculating"));
slider.setVisible(false);
applyButton.setEnabled(false);
redundancy = AlignSeq.computeRedundancyMatrix(originalSequences,
omitHidden, start, end, false);
- label.setText("Enter the redundancy threshold");
+ label.setText(MessageManager.getString("label.enter_redundancy_threshold"));
slider.setVisible(true);
applyButton.setEnabled(true);
valueField.setVisible(true);
if (points == null)
{
g.setFont(new Font("Verdana", Font.PLAIN, 18));
- g.drawString("Calculating PCA....", 20, getSize().height / 2);
+ g.drawString(MessageManager.getString("label.calculating_pca") + "....", 20, getSize().height / 2);
}
else
{
import java.awt.event.*;
import jalview.datamodel.*;
+import jalview.util.MessageManager;
public class ScalePanel extends Panel implements MouseMotionListener,
MouseListener
PopupMenu pop = new PopupMenu();
if (reveal != null)
{
- MenuItem item = new MenuItem("Reveal");
+ MenuItem item = new MenuItem(MessageManager.getString("label.reveal"));
item.addActionListener(new ActionListener()
{
public void actionPerformed(ActionEvent e)
if (av.getColumnSelection().getHiddenColumns().size() > 1)
{
- item = new MenuItem("Reveal All");
+ item = new MenuItem(MessageManager.getString("action.reveal_all"));
item.addActionListener(new ActionListener()
{
public void actionPerformed(ActionEvent e)
}
else if (av.getColumnSelection().contains(res))
{
- MenuItem item = new MenuItem("Hide Columns");
+ MenuItem item = new MenuItem(MessageManager.getString("label.hide_columns"));
item.addActionListener(new ActionListener()
{
public void actionPerformed(ActionEvent e)
if (reveal != null && reveal[0] > startx && reveal[0] < endx)
{
- gg.drawString("Reveal Columns", reveal[0] * av.charWidth, 0);
+ gg.drawString(MessageManager.getString("label.reveal_columns"), reveal[0] * av.charWidth, 0);
}
}
import jalview.datamodel.*;
import jalview.schemes.*;
+import jalview.util.MessageManager;
public class SliderPanel extends Panel implements ActionListener,
AdjustmentListener, MouseListener
applyButton.setVisible(false);
if (forConservation)
{
- label.setText("Modify conservation visibility");
+ label.setText(MessageManager.getString("label.modify_conservation_visibility"));
slider.setMinimum(0);
slider.setMaximum(50 + slider.getVisibleAmount());
slider.setUnitIncrement(1);
}
else
{
- label.setText("Colour residues above % occurence");
+ label.setText(MessageManager.getString("label.colour_residues_above_occurence"));
slider.setMinimum(0);
slider.setMaximum(100 + slider.getVisibleAmount());
slider.setBlockIncrement(1);
valueField.setText(" ");
valueField.addActionListener(this);
label.setFont(new java.awt.Font("Verdana", 0, 11));
- label.setText("set this label text");
+ label.setText(MessageManager.getString("label.set_this_label_text"));
jPanel1.setLayout(borderLayout1);
jPanel2.setLayout(flowLayout1);
applyButton.setFont(new java.awt.Font("Verdana", 0, 11));
- applyButton.setLabel("Apply");
+ applyButton.setLabel(MessageManager.getString("action.apply"));
applyButton.addActionListener(this);
undoButton.setEnabled(false);
undoButton.setFont(new java.awt.Font("Verdana", 0, 11));
- undoButton.setLabel("Undo");
+ undoButton.setLabel(MessageManager.getString("action.undo"));
undoButton.addActionListener(this);
allGroupsCheck.setEnabled(false);
allGroupsCheck.setFont(new java.awt.Font("Verdana", 0, 11));
- allGroupsCheck.setLabel("Apply threshold to all groups");
- allGroupsCheck.setName("Apply to all Groups");
+ allGroupsCheck.setLabel(MessageManager.getString("action.apply_threshold_all_groups"));
+ allGroupsCheck.setName(MessageManager.getString("action.apply_all_groups"));
this.setBackground(Color.white);
this.setForeground(Color.black);
jPanel2.add(label, null);
import jalview.analysis.*;
import jalview.datamodel.*;
import jalview.io.*;
+import jalview.util.MessageManager;
public class TreePanel extends EmbmenuFrame implements ActionListener,
ItemListener
setLayout(borderLayout1);
this.setBackground(Color.white);
this.setFont(new java.awt.Font("Verdana", 0, 12));
- jMenu2.setLabel("View");
- fontSize.setLabel("Font...");
+ jMenu2.setLabel(MessageManager.getString("action.view"));
+ fontSize.setLabel(MessageManager.getString("action.font"));
fontSize.addActionListener(this);
- bootstrapMenu.setLabel("Show Bootstrap Values");
+ bootstrapMenu.setLabel(MessageManager.getString("label.show_bootstrap_values"));
bootstrapMenu.addItemListener(this);
- distanceMenu.setLabel("Show Distances");
+ distanceMenu.setLabel(MessageManager.getString("label.show_distances"));
distanceMenu.addItemListener(this);
- placeholdersMenu.setLabel("Mark Unassociated Leaves");
+ placeholdersMenu.setLabel(MessageManager.getString("label.mark_unassociated_leaves"));
placeholdersMenu.addItemListener(this);
fitToWindow.setState(true);
- fitToWindow.setLabel("Fit To Window");
+ fitToWindow.setLabel(MessageManager.getString("label.fit_to_window"));
fitToWindow.addItemListener(this);
- fileMenu.setLabel("File");
- newickOutput.setLabel("Newick Format");
+ fileMenu.setLabel(MessageManager.getString("action.file"));
+ newickOutput.setLabel(MessageManager.getString("label.newick_format"));
newickOutput.addActionListener(this);
- inputData.setLabel("Input Data...");
+ inputData.setLabel(MessageManager.getString("label.input_data"));
add(scrollPane, BorderLayout.CENTER);
jMenuBar1.add(fileMenu);
import jalview.schemes.GraduatedColor;
import jalview.schemes.ResidueProperties;
import jalview.schemes.UserColourScheme;
+import jalview.util.MessageManager;
import java.awt.Button;
import java.awt.Color;
}
frame = new Frame();
frame.add(this);
- jalview.bin.JalviewLite.addFrame(frame, "User defined colours", 420,
+ jalview.bin.JalviewLite.addFrame(frame, MessageManager.getString("label.user_defined_colours"), 420,
345);
if (seqGroup != null)
gridLayout.setColumns(6);
gridLayout.setRows(4);
okButton.setFont(new java.awt.Font("Verdana", 0, 11));
- okButton.setLabel("OK");
+ okButton.setLabel(MessageManager.getString("action.ok"));
okButton.addActionListener(this);
applyButton.setFont(new java.awt.Font("Verdana", 0, 11));
- applyButton.setLabel("Apply");
+ applyButton.setLabel(MessageManager.getString("action.apply"));
applyButton.addActionListener(this);
cancelButton.setFont(new java.awt.Font("Verdana", 0, 11));
- cancelButton.setLabel("Cancel");
+ cancelButton.setLabel(MessageManager.getString("action.cancel"));
cancelButton.addActionListener(this);
this.setBackground(new Color(212, 208, 223));
okcancelPanel.setBounds(new Rectangle(0, 265, 400, 35));
*/
package jalview.bin;
+import jalview.util.MessageManager;
import jalview.ws.dbsources.das.api.DasSourceRegistryI;
import jalview.ws.dbsources.das.datamodel.DasSourceRegistry;
import java.awt.Color;
import java.io.*;
import java.text.DateFormat;
-import java.text.SimpleDateFormat;
import java.util.*;
import org.apache.log4j.*;
setProperty(property, jalview.util.Format.getHexString(colour));
}
- public static final DateFormat date_format = SimpleDateFormat
- .getDateTimeInstance();
+ public static final DateFormat date_format = DateFormat.getDateInstance(DateFormat.LONG,MessageManager.getLocale());
/**
* store a date in a jalview property
import jalview.javascript.JsCallBack;
import jalview.structure.SelectionListener;
import jalview.structure.StructureSelectionManager;
+import jalview.util.MessageManager;
import java.applet.Applet;
import java.awt.Button;
g.setColor(Color.cyan);
g.fillRect(0, 0, getSize().width, getSize().height);
g.setColor(Color.red);
- g.drawString("Jalview can't open file", 5, 15);
+ g.drawString(MessageManager.getString("label.jalview_cannot_open_file"), 5, 15);
g.drawString("\"" + file + "\"", 5, 30);
}
else if (embedded)
{
g.setColor(Color.black);
g.setFont(new Font("Arial", Font.BOLD, 24));
- g.drawString("Jalview Applet", 50, getSize().height / 2 - 30);
- g.drawString("Loading Data...", 50, getSize().height / 2);
+ g.drawString(MessageManager.getString("label.jalview_applet"), 50, getSize().height / 2 - 30);
+ g.drawString(MessageManager.getString("label.loading_data") + "...", 50, getSize().height / 2);
}
}
if (protocol == jalview.io.AppletFormatAdapter.PASTE)
{
- newAlignFrame.setTitle("Sequences from "
- + applet.getDocumentBase());
+ newAlignFrame.setTitle(MessageManager.formatMessage("label.sequences_from", new String[]{applet.getDocumentBase().toString()}));
}
- newAlignFrame.statusBar.setText("Successfully loaded file " + file);
+ newAlignFrame.statusBar.setText(MessageManager.formatMessage("label.successfully_loaded_file", new String []{file}));
String treeFile = applet.getParameter("tree");
if (treeFile == null)
import jalview.schemes.TurnColourScheme;
import jalview.schemes.UserColourScheme;
import jalview.schemes.ZappoColourScheme;
+import jalview.util.MessageManager;
import jalview.ws.jws1.Discoverer;
import jalview.ws.jws2.Jws2Discoverer;
import jalview.ws.jws2.jabaws2.Jws2Instance;
case KeyEvent.VK_F2:
viewport.cursorMode = !viewport.cursorMode;
- statusBar.setText("Keyboard editing mode is "
- + (viewport.cursorMode ? "on" : "off"));
+ statusBar.setText(MessageManager.formatMessage("label.keyboard_editing_mode", new String[]{(viewport.cursorMode ? "on" : "off")}));
if (viewport.cursorMode)
{
alignPanel.seqPanel.seqCanvas.cursorX = viewport.startRes;
final JPanel progressPanel = (JPanel) progressBars.get(new Long(id));
if (handler.canCancel())
{
- JButton cancel = new JButton("Cancel");
+ JButton cancel = new JButton(MessageManager.getString("action.cancel"));
final IProgressIndicator us = this;
cancel.addActionListener(new ActionListener()
{
if (currentFileFormat == null)
{
JOptionPane.showInternalMessageDialog(Desktop.desktop,
- "You must select a file format before saving!",
- "File format not specified", JOptionPane.WARNING_MESSAGE);
+ MessageManager.getString("label.select_file_format_before_saving"),
+ MessageManager.getString("label.file_format_not_specified"), JOptionPane.WARNING_MESSAGE);
value = chooser.showSaveDialog(this);
return;
}
success = new Jalview2XML().SaveAlignment(this, file, shortName);
- statusBar.setText("Successfully saved to file: " + fileName + " in "
- + format + " format.");
+ statusBar.setText(MessageManager.formatMessage("label.successfully_saved_to_file_in_format",new String[]{fileName, format}));
+
}
else
int reply = JOptionPane
.showInternalConfirmDialog(
Desktop.desktop,
- "The Alignment contains hidden columns."
- + "\nDo you want to save only the visible alignment?",
- "Save / Omit Hidden Columns",
+ MessageManager.getString("label.alignment_contains_hidden_columns"),
+ MessageManager.getString("action.save_omit_hidden_columns"),
JOptionPane.YES_NO_OPTION,
JOptionPane.QUESTION_MESSAGE);
out.print(output);
out.close();
this.setTitle(file);
- statusBar.setText("Successfully saved to file: " + fileName
- + " in " + format + " format.");
+ statusBar.setText(MessageManager.formatMessage("label.successfully_saved_to_file_in_format",new String[]{fileName, format}));
} catch (Exception ex)
{
success = false;
if (!success)
{
- JOptionPane.showInternalMessageDialog(this, "Couldn't save file: "
- + fileName, "Error Saving File", JOptionPane.WARNING_MESSAGE);
+ JOptionPane.showInternalMessageDialog(this, MessageManager.formatMessage("label.couldnt_save_file", new String[]{fileName}),
+ MessageManager.getString("label.error_saving_file"), JOptionPane.WARNING_MESSAGE);
}
return success;
int reply = JOptionPane
.showInternalConfirmDialog(
Desktop.desktop,
- "The Alignment contains hidden columns."
- + "\nDo you want to output only the visible alignment?",
- "Save / Omit Hidden Columns",
+ MessageManager.getString("label.alignment_contains_hidden_columns"),
+ MessageManager.getString("action.save_omit_hidden_columns"),
JOptionPane.YES_NO_OPTION,
JOptionPane.QUESTION_MESSAGE);
{
undoMenuItem.setEnabled(true);
CommandI command = (CommandI) viewport.historyList.peek();
- undoMenuItem.setText("Undo " + command.getDescription());
+ undoMenuItem.setText(MessageManager.formatMessage("label.undo_command", new String[]{command.getDescription()}));
}
else
{
undoMenuItem.setEnabled(false);
- undoMenuItem.setText("Undo");
+ undoMenuItem.setText(MessageManager.getString("action.undo"));
}
if (viewport.redoList.size() > 0)
redoMenuItem.setEnabled(true);
CommandI command = (CommandI) viewport.redoList.peek();
- redoMenuItem.setText("Redo " + command.getDescription());
+ redoMenuItem.setText(MessageManager.formatMessage("label.redo_command", new String[]{command.getDescription()}));
}
else
{
redoMenuItem.setEnabled(false);
- redoMenuItem.setText("Redo");
+ redoMenuItem.setText(MessageManager.getString("action.redo"));
}
}
Desktop.jalviewClipboard = new Object[]
{ seqs, viewport.getAlignment().getDataset(), hiddenColumns };
- statusBar.setText("Copied " + seqs.length + " sequences to clipboard.");
+ statusBar.setText(MessageManager.formatMessage("label.copied_sequences_to_clipboard", new String[]{Integer.valueOf(seqs.length).toString()}));
}
/**
viewport.getSelectionGroup());
}
- statusBar.setText("Removed " + trimRegion.getSize() + " columns.");
+ statusBar.setText(MessageManager.formatMessage("label.removed_columns", new String[]{Integer.valueOf(trimRegion.getSize()).toString()}));
addHistoryItem(trimRegion);
addHistoryItem(removeGapCols);
- statusBar.setText("Removed " + removeGapCols.getSize()
- + " empty columns.");
+ statusBar.setText(MessageManager.formatMessage("label.removed_empty_columns", new String[]{Integer.valueOf(removeGapCols.getSize()).toString()}));
// This is to maintain viewport position on first residue
// of first sequence
editPane.setEditable(false);
StringBuffer contents = new AlignmentProperties(viewport.getAlignment())
.formatAsHtml();
- editPane.setText("<html>" + contents.toString() + "</html>");
+ editPane.setText(MessageManager.formatMessage("label.html_content", new String[]{contents.toString()}));
JInternalFrame frame = new JInternalFrame();
frame.getContentPane().add(new JScrollPane(editPane));
int option = JOptionPane.showInternalConfirmDialog(
jalview.gui.Desktop.desktop,
- "Remove from default list?",
- "Remove user defined colour",
+ MessageManager.getString("label.remove_from_default_list"),
+ MessageManager.getString("label.remove_user_defined_colour"),
JOptionPane.YES_NO_OPTION);
if (option == JOptionPane.YES_OPTION)
{
|| (viewport.getSelectionGroup().getSize() < 2))
{
JOptionPane.showInternalMessageDialog(this,
- "You must select at least 2 sequences.", "Invalid Selection",
+ MessageManager.getString("label.you_must_select_least_two_sequences"), MessageManager.getString("label.invalid_selection"),
JOptionPane.WARNING_MESSAGE);
}
else
|| (viewport.getAlignment().getHeight() < 4))
{
JOptionPane.showInternalMessageDialog(this,
- "Principal component analysis must take\n"
- + "at least 4 input sequences.",
- "Sequence selection insufficient",
+ MessageManager.getString("label.principal_component_analysis_must_take_least_four_input_sequences"),
+ MessageManager.getString("label.sequence_selection_insufficient"),
JOptionPane.WARNING_MESSAGE);
return;
JOptionPane
.showMessageDialog(
Desktop.desktop,
- "You need to have more than two sequences selected to build a tree!",
- "Not enough sequences", JOptionPane.WARNING_MESSAGE);
+ MessageManager.getString("label.you_need_more_two_sequences_selected_build_tree"),
+ MessageManager.getString("label.not_enough_sequences"), JOptionPane.WARNING_MESSAGE);
return;
}
JOptionPane
.showMessageDialog(
Desktop.desktop,
- "The selected region to create a tree may\nonly contain residues or gaps.\n"
- + "Try using the Pad function in the edit menu,\n"
- + "or one of the multiple sequence alignment web services.",
- "Sequences in selection are not aligned",
+ MessageManager.getString("label.selected_region_to_tree_may_only_contain_residues_or_gaps"),
+ MessageManager.getString("label.sequences_selection_not_aligned"),
JOptionPane.WARNING_MESSAGE);
return;
JOptionPane
.showMessageDialog(
Desktop.desktop,
- "The sequences must be aligned before creating a tree.\n"
- + "Try using the Pad function in the edit menu,\n"
- + "or one of the multiple sequence alignment web services.",
- "Sequences not aligned",
+ MessageManager.getString("label.sequences_must_be_aligned_before_creating_tree"),
+ MessageManager.getString("label.sequences_not_aligned"),
JOptionPane.WARNING_MESSAGE);
return;
} catch (Exception ex)
{
JOptionPane.showMessageDialog(Desktop.desktop, ex.getMessage(),
- "Problem reading tree file", JOptionPane.WARNING_MESSAGE);
+ MessageManager.getString("label.problem_reading_tree_file"), JOptionPane.WARNING_MESSAGE);
ex.printStackTrace();
}
if (fin != null && fin.hasWarningMessage())
{
JOptionPane.showMessageDialog(Desktop.desktop,
- fin.getWarningMessage(), "Possible problem with tree file",
+ fin.getWarningMessage(), MessageManager.getString("label.possible_problem_with_tree_file"),
JOptionPane.WARNING_MESSAGE);
}
}
JOptionPane
.showMessageDialog(
Desktop.desktop,
- "Please select at least three bases in at least one sequence in order to perform a cDNA translation.",
- "Translation Failed", JOptionPane.WARNING_MESSAGE);
+ MessageManager.getString("label.select_at_least_three_bases_in_at_least_one_sequence_to_cDNA_translation"),
+ MessageManager.getString("label.translation_failed"), JOptionPane.WARNING_MESSAGE);
}
else
{
JOptionPane
.showMessageDialog(
Desktop.desktop,
- "Unfortunately, something went wrong when translating your sequences.\nPlease take a look in the Jalview java console\nand submit a bug report including the stacktrace.",
- "Implementation error: Translation Failed", JOptionPane.ERROR_MESSAGE);
+ MessageManager.getString("label.error_when_translating_sequences_submit_bug_report"),
+ MessageManager.getString("label.implementation_error") + MessageManager.getString("translation_failed"), JOptionPane.ERROR_MESSAGE);
return;
}
if (al == null)
JOptionPane
.showMessageDialog(
Desktop.desktop,
- "Please select at least three bases in at least one sequence in order to perform a cDNA translation.",
- "Translation Failed", JOptionPane.WARNING_MESSAGE);
+ MessageManager.getString("label.select_at_least_three_bases_in_at_least_one_sequence_to_cDNA_translation"),
+ MessageManager.getString("label.translation_failed"), JOptionPane.WARNING_MESSAGE);
}
else
{
|| JOptionPane
.showConfirmDialog(
this,
- "Do you want to automatically associate the "
- + filesmatched.size()
- + " PDB files with sequences in the alignment that have the same name ?",
- "Automatically Associate PDB files by name",
+ MessageManager.formatMessage("label.automatically_associate_pdb_files_with_sequences_same_name",
+ new String[]{Integer.valueOf(filesmatched.size()).toString()}),
+ MessageManager.getString("label.automatically_associate_pdb_files_by_name"),
JOptionPane.YES_NO_OPTION) == JOptionPane.YES_OPTION)
{
"AUTOASSOCIATE_PDBANDSEQS_IGNOREOTHERS", false) || JOptionPane
.showConfirmDialog(
this,
- "<html>Do you want to <em>ignore</em> the "
- + filesnotmatched.size()
- + " files whose names did not match any sequence IDs ?</html>",
- "Ignore unmatched dropped files ?",
+ MessageManager.formatMessage("label.ignore_unmatched_dropped_files_info", new String[]{Integer.valueOf(filesnotmatched.size()).toString()}),
+ MessageManager.getString("label.ignore_unmatched_dropped_files"),
JOptionPane.YES_NO_OPTION) == JOptionPane.YES_OPTION))
{
return;
tcoffeeColour.setSelected(true);
changeColour(new TCoffeeColourScheme(viewport.getAlignment()));
isAnnotation = true;
- statusBar
- .setText("Successfully pasted T-Coffee scores to alignment.");
+ statusBar.setText(MessageManager.getString("label.successfully_pasted_tcoffee_scores_to_alignment"));
}
else
{
JOptionPane
.showMessageDialog(
Desktop.desktop,
- tcf.getWarningMessage() == null ? "Check that the file matches sequence IDs in the alignment."
+ tcf.getWarningMessage() == null ? MessageManager.getString("label.check_file_matches_sequence_ids_alignment")
: tcf.getWarningMessage(),
- "Problem reading T-COFFEE score file",
+ MessageManager.getString("label.problem_reading_tcoffee_score_file"),
JOptionPane.WARNING_MESSAGE);
}
}
if (SwingUtilities.isRightMouseButton(e))
{
String reply = JOptionPane.showInternalInputDialog(this,
- "Enter View Name", "Edit View Name",
+ MessageManager.getString("label.enter_view_name"), MessageManager.getString("label.enter_view_name"),
JOptionPane.QUESTION_MESSAGE);
if (reply != null)
++i;
if (++icomp >= mcomp || i == (otherdb.size()))
{
- ifetch.setText(imname + " to '" + sname + "'");
+ ifetch.setText(MessageManager.formatMessage("label.source_to_target",new String[]{imname,sname}));
dfetch.add(ifetch);
ifetch = new JMenu();
imname = null;
++dbi;
if (comp >= mcomp || dbi >= (dbclasses.length))
{
- dfetch.setText(mname + " to '" + dbclass + "'");
+ dfetch.setText(MessageManager.formatMessage("label.source_to_target",new String[]{mname,dbclass}));
rfetch.add(dfetch);
dfetch = new JMenu();
mname = null;
import jalview.bin.Cache;
import jalview.datamodel.*;
import jalview.schemes.*;
+import jalview.util.MessageManager;
+
import java.awt.Dimension;
public class AnnotationColourChooser extends JPanel
}
});
ok.setOpaque(false);
- ok.setText("OK");
+ ok.setText(MessageManager.getString("action.ok"));
ok.addActionListener(new ActionListener()
{
public void actionPerformed(ActionEvent e)
}
});
cancel.setOpaque(false);
- cancel.setText("Cancel");
+ cancel.setText(MessageManager.getString("action.cancel"));
cancel.addActionListener(new ActionListener()
{
public void actionPerformed(ActionEvent e)
}
});
defColours.setOpaque(false);
- defColours.setText("Defaults");
+ defColours.setText(MessageManager.getString("action.set_defaults"));
defColours
.setToolTipText("Reset min and max colours to defaults from user preferences.");
defColours.addActionListener(new ActionListener()
thresholdValue.setColumns(7);
currentColours.setFont(JvSwingUtils.getLabelFont());
currentColours.setOpaque(false);
- currentColours.setText("Use Original Colours");
+ currentColours.setText(MessageManager.getString("label.use_original_colours"));
currentColours.addActionListener(new ActionListener()
{
public void actionPerformed(ActionEvent e)
});
thresholdIsMin.setBackground(Color.white);
thresholdIsMin.setFont(JvSwingUtils.getLabelFont());
- thresholdIsMin.setText("Threshold is Min/Max");
+ thresholdIsMin.setText(MessageManager.getString("label.threshold_minmax"));
thresholdIsMin.addActionListener(new ActionListener()
{
public void actionPerformed(ActionEvent actionEvent)
});
seqAssociated.setBackground(Color.white);
seqAssociated.setFont(JvSwingUtils.getLabelFont());
- seqAssociated.setText("Per-sequence only");
+ seqAssociated.setText(MessageManager.getString("label.per_sequence_only"));
seqAssociated.addActionListener(new ActionListener()
{
import jalview.datamodel.*;
import jalview.io.*;
+import jalview.util.MessageManager;
/**
*
{
this.setLayout(new BorderLayout());
- toFile.setText("to File");
+ toFile.setText(MessageManager.getString("label.to_file"));
toFile.addActionListener(new ActionListener()
{
public void actionPerformed(ActionEvent e)
toFile_actionPerformed(e);
}
});
- toTextbox.setText("to Textbox");
+ toTextbox.setText(MessageManager.getString("label.to_textbox"));
toTextbox.addActionListener(new ActionListener()
{
public void actionPerformed(ActionEvent e)
toTextbox_actionPerformed(e);
}
});
- close.setText("Close");
+ close.setText(MessageManager.getString("action.close"));
close.addActionListener(new ActionListener()
{
public void actionPerformed(ActionEvent e)
GFFFormat.setOpaque(false);
GFFFormat.setText("GFF");
CSVFormat.setOpaque(false);
- CSVFormat.setText("CSV(Spreadsheet)");
+ CSVFormat.setText(MessageManager.getString("label.csv_spreadsheet"));
jLabel1.setHorizontalAlignment(SwingConstants.TRAILING);
- jLabel1.setText("Format: ");
+ jLabel1.setText(MessageManager.getString("action.format") + " ");
this.setBackground(Color.white);
jPanel3.setBorder(BorderFactory.createEtchedBorder());
jPanel3.setOpaque(false);
import jalview.datamodel.*;
import jalview.io.*;
+import jalview.util.MessageManager;
/**
* DOCUMENT ME!
if (!av.wrapAlignment && ((aa == null) || (aa.length < 1)))
{
- g.drawString("Right click", 2, 8);
- g.drawString("to add annotation", 2, 18);
+ g.drawString(MessageManager.getString("label.right_click"), 2, 8);
+ g.drawString(MessageManager.getString("label.to_add_annotation"), 2, 18);
}
}
}
import java.awt.*;
import java.awt.event.*;
import java.awt.image.*;
+
import javax.swing.*;
import jalview.datamodel.*;
import jalview.renderer.AnnotationRenderer;
import jalview.renderer.AwtRenderPanelI;
+import jalview.util.MessageManager;
/**
* AnnotationPanel displays visible portion of annotation rows below unwrapped
else if (evt.getActionCommand().equals(LABEL))
{
String exMesg = collectAnnotVals(anot, av.getColumnSelection(), LABEL);
- String label = JOptionPane.showInputDialog(this, "Enter label",
+ String label = JOptionPane.showInputDialog(this, MessageManager.getString("label.enter_label"),
exMesg);
if (label == null)
}
String label = JOptionPane.showInputDialog(
- "Enter a label for the structure?", symbol);
+ MessageManager.getString("label.enter_label_for_the_structure"), symbol);
if (label == null)
{
g.setColor(Color.black);
if (av.validCharWidth)
{
- g.drawString("Alignment has no annotations", 20, 15);
+ g.drawString(MessageManager.getString("label.alignment_has_no_annotations"), 20, 15);
}
return;
import jalview.datamodel.PDBEntry;
import jalview.io.*;
import jalview.schemes.*;
+import jalview.util.MessageManager;
import jalview.util.Platform;
public class AppJmol extends GStructureViewer implements Runnable,
if (alreadyMapped != null)
{
int option = JOptionPane.showInternalConfirmDialog(Desktop.desktop,
- pdbentry.getId() + " is already displayed."
- + "\nDo you want to re-use this viewer ?",
- "Map Sequences to Visible Window: " + pdbentry.getId(),
+ MessageManager.formatMessage("label.pdb_entry_is_already_displayed", new String[]{pdbentry.getId()}),
+ MessageManager.formatMessage("label.map_sequences_to_visible_window", new String[]{pdbentry.getId()}),
JOptionPane.YES_NO_OPTION);
if (option == JOptionPane.YES_OPTION)
AppJmol topJmol = (AppJmol) jm.nextElement();
// TODO: highlight topJmol in view somehow
int option = JOptionPane.showInternalConfirmDialog(Desktop.desktop,
- "Do you want to add " + pdbentry.getId()
- + " to the view called\n'" + topJmol.getTitle()
- + "'\n", "Align to existing structure view",
+ MessageManager.formatMessage("label.add_pdbentry_to_view", new String[]{pdbentry.getId(),topJmol.getTitle()}),
+ MessageManager.getString("label.align_to_existing_structure_view"),
JOptionPane.YES_NO_OPTION);
if (option == JOptionPane.YES_OPTION)
{
{
JOptionPane.showInternalMessageDialog(Desktop.desktop,
- "The following pdb entries could not be retrieved from the PDB:\n"
- + errormsgs.toString()
- + "\nPlease try downloading them manually.",
- "Couldn't load file", JOptionPane.ERROR_MESSAGE);
+ MessageManager.formatMessage("label.pdb_entries_couldnt_be_retrieved", new String[]{errormsgs.toString()}),
+ MessageManager.getString("label.couldnt_load_file"), JOptionPane.ERROR_MESSAGE);
}
long lastnotify = jmb.getLoadNotifiesHandled();
g.fillRect(0, 0, currentSize.width, currentSize.height);
g.setColor(Color.white);
g.setFont(new Font("Verdana", Font.BOLD, 14));
- g.drawString("Error loading file...", 20, currentSize.height / 2);
+ g.drawString(MessageManager.getString("label.error_loading_file") + "...", 20, currentSize.height / 2);
StringBuffer sb = new StringBuffer();
int lines = 0;
for (int e = 0; e < jmb.pdbentry.length; e++)
g.fillRect(0, 0, currentSize.width, currentSize.height);
g.setColor(Color.white);
g.setFont(new Font("Verdana", Font.BOLD, 14));
- g.drawString("Retrieving PDB data....", 20, currentSize.height / 2);
+ g.drawString(MessageManager.getString("label.retrieving_pdb_data"), 20, currentSize.height / 2);
}
else
{
*/
package jalview.gui;
+import jalview.util.MessageManager;
+
import java.awt.BorderLayout;
import java.awt.Color;
import java.awt.Component;
private JTextField _seq = new JTextField();
- private JLabel _strLabel = new JLabel(" Str:");
+ private JLabel _strLabel = new JLabel(MessageManager.getString("label.str"));
- private JLabel _seqLabel = new JLabel(" Seq:");
+ private JLabel _seqLabel = new JLabel(MessageManager.getString("label.seq"));
- private JButton _createButton = new JButton("Create");
+ private JButton _createButton = new JButton(MessageManager.getString("action.create"));
- private JButton _updateButton = new JButton("Update");
+ private JButton _updateButton = new JButton(MessageManager.getString("action.update"));
- private JButton _deleteButton = new JButton("Delete");
+ private JButton _deleteButton = new JButton(MessageManager.getString("action.delete"));
- private JButton _duplicateButton = new JButton("Snapshot");
+ private JButton _duplicateButton = new JButton(MessageManager.getString("action.snapshot"));
protected JPanel _listPanel = new JPanel();
ops.add(_deleteButton);
ops.add(_duplicateButton);
- JLabel j = new JLabel("Structures Manager", JLabel.CENTER);
+ JLabel j = new JLabel(MessageManager.getString("label.structures_manager"), JLabel.CENTER);
_listPanel.setLayout(new BorderLayout());
// _listPanel.add(ops, BorderLayout.SOUTH);
import jalview.datamodel.PDBEntry;
import jalview.datamodel.SequenceI;
+import jalview.util.MessageManager;
/**
* GUI related routines for associating PDB files with sequences
reply = JOptionPane
.showInternalInputDialog(
Desktop.desktop,
- "Couldn't find a PDB id in the file supplied."
- + "Please enter an Id to identify this structure.",
- "No PDB Id in File", JOptionPane.QUESTION_MESSAGE);
+ MessageManager.getString("label.couldnt_find_pdb_id_in_file"),
+ MessageManager.getString("label.no_pdb_id_in_file"), JOptionPane.QUESTION_MESSAGE);
}
if (reply == null)
{
package jalview.gui;
import jalview.bin.Cache;
+import jalview.util.MessageManager;
+
import java.awt.BorderLayout;
import java.awt.Component;
import java.awt.Dimension;
java.util.Date earliest = null;
try
{
- earliest = new SimpleDateFormat("YYYY-MM-DD").parse(chan
+ earliest = new SimpleDateFormat("YYYY-MM-DD",MessageManager.getLocale()).parse(chan
.getHTTPLastModified());
} catch (Exception x)
{
topBottomSplitPane.setBottomComponent(bottomPanel);
JScrollPane spTextDescription = new JScrollPane(textDescription);
textDescription.setText("");
- statusBar.setText(" [Status] ");
+ statusBar.setText(MessageManager.getString("label.status"));
buttonRefresh.addActionListener(new ActionListener()
{
_popupChannels);
listItems.addMouseListener(popupAdapter);
listItems.setCellRenderer(new ItemsRenderer());
- lblChannels.setText("Channels");
+ lblChannels.setText(MessageManager.getString("label.channels"));
}
private void postInit()
if (value instanceof Channel)
{
Channel channel = (Channel) value;
- component.setText(channel.getTitle() + " ("
- + channel.getUnreadItemCount() + ")");
+ component.setText(MessageManager.formatMessage("label.channel_title_item_count", new String[]{channel.getTitle(),Integer.valueOf(channel.getUnreadItemCount()).toString()}));
component.setToolTipText(channel.getURL());
}
return component;
Item item = (Item) value;
if (item.getPublishDate() != null)
{
- component.setText(DateFormat.getDateInstance().format(
- item.getPublishDate())
- + " " + item.getTitle());
+ component.setText(MessageManager.formatMessage("label.blog_item_published_on_date", new String[]{DateFormat.getDateInstance(DateFormat.LONG, MessageManager.getLocale()).format(item.getPublishDate()).toString(),item.getTitle()}));
}
component.setToolTipText(item.getLink());
if (!item.isRead())
*/
package jalview.gui;
+import jalview.util.MessageManager;
+
import java.io.*;
import java.awt.*;
import java.awt.event.*;
// textArea = cpt.getTextArea();
textArea = new JTextArea();
textArea.setEditable(false);
- JButton button = new JButton("clear");
+ JButton button = new JButton(MessageManager.getString("action.clear"));
// frame = cpt;
frame.getContentPane().setLayout(new BorderLayout());
import jalview.io.*;
import jalview.jbgui.*;
+import jalview.util.MessageManager;
/**
* Cut'n'paste files into the desktop See JAL-1105
this.viewport = viewport;
if (viewport != null)
{
- ok.setText("Add");
+ ok.setText(MessageManager.getString("action.add"));
}
getContentPane().add(inputButtonPanel, java.awt.BorderLayout.SOUTH);
import jalview.datamodel.*;
import jalview.io.*;
import jalview.jbgui.*;
+import jalview.util.MessageManager;
/**
* Cut'n'paste files into the desktop See JAL-1105
this.viewport = viewport;
if (viewport != null)
{
- ok.setText("Add");
+ ok.setText(MessageManager.getString("action.add"));
}
getContentPane().add(inputButtonPanel, java.awt.BorderLayout.SOUTH);
} catch (java.io.IOException ex)
{
JOptionPane.showInternalMessageDialog(Desktop.desktop,
- "Couldn't read the pasted text.\n" + ex.toString(),
- "Error parsing text", JOptionPane.WARNING_MESSAGE);
+ MessageManager.formatMessage("label.couldnt_read_pasted_text", new String[]{ex.toString()}),
+ MessageManager.getString("label.error_parsing_text"), JOptionPane.WARNING_MESSAGE);
}
}
af.currentFileFormat = format;
Desktop.addInternalFrame(af, "Cut & Paste input - " + format,
AlignFrame.DEFAULT_WIDTH, AlignFrame.DEFAULT_HEIGHT);
- af.statusBar.setText("Successfully pasted alignment file");
+ af.statusBar.setText(MessageManager.getString("label.successfully_pasted_alignment_file"));
try
{
package jalview.gui;
import jalview.jbgui.GDasSourceBrowser;
+import jalview.util.MessageManager;
import jalview.util.TableSorter;
import jalview.ws.dbsources.das.api.DasSourceRegistryI;
import jalview.ws.dbsources.das.api.jalviewSourceI;
if (nickName == null)
{
- fullDetails.setText(text + "Select a DAS service from the table"
- + " to read a full description here.</font></html>");
+ fullDetails.setText(text + MessageManager.getString("label.select_das_service_from_table"));
return;
}
JTextField nametf = new JTextField(nickname, 40);
JTextField urltf = new JTextField(url, 40);
- JCheckBox seqs = new JCheckBox("Sequence Source");
+ JCheckBox seqs = new JCheckBox(MessageManager.getString("label.sequence_source"));
seqs.setSelected(seqsrc);
JPanel panel = new JPanel(new BorderLayout());
JPanel pane12 = new JPanel(new BorderLayout());
- pane12.add(new JLabel("Nickname: "), BorderLayout.CENTER);
+ pane12.add(new JLabel(MessageManager.getString("label.structure_manager")), BorderLayout.CENTER);
pane12.add(nametf, BorderLayout.EAST);
panel.add(pane12, BorderLayout.NORTH);
pane12 = new JPanel(new BorderLayout());
- pane12.add(new JLabel("URL: "), BorderLayout.NORTH);
+ pane12.add(new JLabel(MessageManager.getString("label.url")), BorderLayout.NORTH);
pane12.add(seqs, BorderLayout.SOUTH);
pane12.add(urltf, BorderLayout.EAST);
panel.add(pane12, BorderLayout.SOUTH);
int reply = JOptionPane.showInternalConfirmDialog(Desktop.desktop,
- panel, "Enter Nickname & URL of Local DAS Source",
+ panel, MessageManager.getString("label.enter_local_das_source"),
JOptionPane.OK_CANCEL_OPTION);
if (reply != JOptionPane.OK_OPTION)
if (!sourceRegistry.getSource(nickname).isLocal())
{
JOptionPane.showInternalMessageDialog(Desktop.desktop,
- "You can only edit or remove local DAS Sources!",
- "Public DAS source - not editable",
+ MessageManager.getString("label.you_can_only_edit_or_remove_local_das_sources"),
+ MessageManager.getString("label.public_das_source"),
JOptionPane.WARNING_MESSAGE);
return;
}
import jalview.io.IdentifyFile;
import jalview.io.JalviewFileChooser;
import jalview.io.JalviewFileView;
+import jalview.util.MessageManager;
import jalview.ws.params.ParamManager;
import java.awt.BorderLayout;
{
// This construct allows us to have a wider textfield
// for viewing
- JLabel label = new JLabel("Enter URL of Input File");
+ JLabel label = new JLabel(MessageManager.getString("label.input_file_url"));
final JComboBox history = new JComboBox();
JPanel panel = new JPanel(new GridLayout(2, 1));
}
int reply = JOptionPane.showInternalConfirmDialog(desktop, panel,
- "Input Alignment From URL", JOptionPane.OK_CANCEL_OPTION);
+ MessageManager.getString("label.input_alignment_from_url"), JOptionPane.OK_CANCEL_OPTION);
if (reply != JOptionPane.OK_OPTION)
{
if (!vamsasImport(chooser.getSelectedFile()))
{
JOptionPane.showInternalMessageDialog(Desktop.desktop,
- "Couldn't import '" + fle + "' as a new vamsas session.",
- "Vamsas Document Import Failed",
+ MessageManager.formatMessage("label.couldnt_import_as_vamsas_session", new String[]{fle}),
+ MessageManager.getString("label.vamsas_document_import_failed"),
JOptionPane.ERROR_MESSAGE);
}
}
protected void setupVamsasConnectedGui()
{
- vamsasStart.setText("Session Update");
+ vamsasStart.setText(MessageManager.getString("label.session_update"));
vamsasSave.setVisible(true);
vamsasStop.setVisible(true);
vamsasImport.setVisible(false); // Document import to existing session is
vamsasSave.setVisible(false);
vamsasStop.setVisible(false);
vamsasImport.setVisible(true);
- vamsasStart.setText("New Vamsas Session");
+ vamsasStart.setText(MessageManager.getString("label.new_vamsas_session"));
}
public void vamsasStop_actionPerformed(ActionEvent e)
if (fm != null)
{
g.drawString(
- "Total Free Memory: " + df.format(totalFreeMemory)
- + "MB; Max Memory: " + df.format(maxMemory)
- + "MB; " + df.format(percentUsage) + "%", 10,
+ MessageManager.formatMessage("label.memory_stats", new String[]{df.format(totalFreeMemory),df.format(maxMemory),df.format(percentUsage)}), 10,
getHeight() - fm.getHeight());
}
}
if (jalview.bin.Cache.groovyJarsPresent())
{
groovyShell = new JMenuItem();
- groovyShell.setText("Groovy Console...");
+ groovyShell.setText(MessageManager.getString("label.groovy_console"));
groovyShell.addActionListener(new ActionListener()
{
public void actionPerformed(ActionEvent e)
final JPanel progressPanel = (JPanel) progressBars.get(new Long(id));
if (handler.canCancel())
{
- JButton cancel = new JButton("Cancel");
+ JButton cancel = new JButton(MessageManager.getString("action.cancel"));
final IProgressIndicator us = this;
cancel.addActionListener(new ActionListener()
{
*/
package jalview.gui;
+import jalview.util.MessageManager;
+
import java.awt.*;
import java.awt.event.*;
import javax.swing.*;
private void jbInit() throws Exception
{
lineart.setFont(JvSwingUtils.getLabelFont());
- lineart.setText("Lineart");
+ lineart.setText(MessageManager.getString("label.lineart"));
text.setFont(JvSwingUtils.getLabelFont());
- text.setText("Text");
+ text.setText(MessageManager.getString("action.text"));
text.setSelected(true);
askAgain.setFont(JvSwingUtils.getLabelFont());
- askAgain.setText("Don\'t ask me again");
- ok.setText("OK");
+ askAgain.setText(MessageManager.getString("label.dont_ask_me_again"));
+ ok.setText(MessageManager.getString("action.ok"));
ok.addActionListener(new ActionListener()
{
public void actionPerformed(ActionEvent e)
ok_actionPerformed(e);
}
});
- cancel.setText("Cancel");
+ cancel.setText(MessageManager.getString("action.cancel"));
cancel.addActionListener(new ActionListener()
{
public void actionPerformed(ActionEvent e)
}
});
jLabel1.setFont(JvSwingUtils.getLabelFont());
- jLabel1.setText("Select EPS character rendering style");
+ jLabel1.setText(MessageManager.getString("label.select_eps_character_rendering_style"));
this.setLayout(borderLayout1);
jPanel3.setBorder(BorderFactory.createEtchedBorder());
jPanel2.add(text);
*/
package jalview.gui;
+import jalview.util.MessageManager;
+
import java.awt.*;
import javax.swing.*;
{
JTextField id, description;
- JButton ok = new JButton("Accept");
+ JButton ok = new JButton(MessageManager.getString("action.accept"));
- JButton cancel = new JButton("Cancel");
+ JButton cancel = new JButton(MessageManager.getString("action.cancel"));
boolean accept = false;
import jalview.datamodel.*;
import jalview.schemes.*;
+import jalview.util.MessageManager;
+
import java.awt.Dimension;
public class FeatureColourChooser extends JalviewDialog
}
});
maxColour.setBorder(new LineBorder(Color.black));
- minText.setText("Min:");
+ minText.setText(MessageManager.getString("label.min"));
minText.setFont(JvSwingUtils.getLabelFont());
- maxText.setText("Max:");
+ maxText.setText(MessageManager.getString("label.max"));
maxText.setFont(JvSwingUtils.getLabelFont());
this.setLayout(borderLayout1);
jPanel2.setLayout(flowLayout1);
thresholdValue.setColumns(7);
jPanel3.setBackground(Color.white);
thresholdIsMin.setBackground(Color.white);
- thresholdIsMin.setText("Threshold is Min/Max");
+ thresholdIsMin.setText(MessageManager.getString("label.threshold_minmax"));
thresholdIsMin
.setToolTipText("Toggle between absolute and relative display threshold.");
thresholdIsMin.addActionListener(new ActionListener()
}
});
colourByLabel.setBackground(Color.white);
- colourByLabel.setText("Colour by Label");
+ colourByLabel.setText(MessageManager.getString("label.colour_by_label"));
colourByLabel
.setToolTipText("Display features of the same type with a different label using a different colour. (e.g. domain features)");
colourByLabel.addActionListener(new ActionListener()
import jalview.datamodel.*;
import jalview.schemes.GraduatedColor;
+import jalview.util.MessageManager;
/**
* DOCUMENT ME!
{
panel = new JPanel(new GridLayout(4, 1));
tmp = new JPanel();
- tmp.add(new JLabel("Select Feature: "));
+ tmp.add(new JLabel(MessageManager.getString("label.select_feature")));
overlaps = new JComboBox();
for (int i = 0; i < features.length; i++)
{
tmp = new JPanel();
panel.add(tmp);
- tmp.add(new JLabel("Name: ", JLabel.RIGHT));
+ tmp.add(new JLabel(MessageManager.getString("label.name"), JLabel.RIGHT));
tmp.add(name);
tmp = new JPanel();
panel.add(tmp);
- tmp.add(new JLabel("Group: ", JLabel.RIGHT));
+ tmp.add(new JLabel(MessageManager.getString("label.group"), JLabel.RIGHT));
tmp.add(source);
tmp = new JPanel();
panel.add(tmp);
- tmp.add(new JLabel("Colour: ", JLabel.RIGHT));
+ tmp.add(new JLabel(MessageManager.getString("label.colour"), JLabel.RIGHT));
tmp.add(colour);
colour.setPreferredSize(new Dimension(150, 15));
colour.setFont(new java.awt.Font("Verdana", Font.PLAIN, 9));
bigPanel.add(panel, BorderLayout.NORTH);
panel = new JPanel();
- panel.add(new JLabel("Description: ", JLabel.RIGHT));
+ panel.add(new JLabel(MessageManager.getString("label.description"), JLabel.RIGHT));
description.setFont(JvSwingUtils.getTextAreaFont());
description.setLineWrap(true);
panel.add(new JScrollPane(description));
bigPanel.add(panel, BorderLayout.SOUTH);
panel = new JPanel();
- panel.add(new JLabel(" Start:", JLabel.RIGHT));
+ panel.add(new JLabel(MessageManager.getString("label.start"), JLabel.RIGHT));
panel.add(start);
- panel.add(new JLabel(" End:", JLabel.RIGHT));
+ panel.add(new JLabel(MessageManager.getString("label.end"), JLabel.RIGHT));
panel.add(end);
bigPanel.add(panel, BorderLayout.CENTER);
}
import jalview.io.*;
import jalview.schemes.AnnotationColourGradient;
import jalview.schemes.GraduatedColor;
+import jalview.util.MessageManager;
import jalview.ws.dbsources.das.api.jalviewSourceI;
public class FeatureSettings extends JPanel
dasSettingsPane.setLayout(borderLayout3);
bigPanel.setLayout(borderLayout4);
invert.setFont(JvSwingUtils.getLabelFont());
- invert.setText("Invert Selection");
+ invert.setText(MessageManager.getString("label.invert_selection"));
invert.addActionListener(new ActionListener()
{
public void actionPerformed(ActionEvent e)
}
});
optimizeOrder.setFont(JvSwingUtils.getLabelFont());
- optimizeOrder.setText("Optimise Order");
+ optimizeOrder.setText(MessageManager.getString("label.optimise_order"));
optimizeOrder.addActionListener(new ActionListener()
{
public void actionPerformed(ActionEvent e)
}
});
sortByScore.setFont(JvSwingUtils.getLabelFont());
- sortByScore.setText("Seq sort by Score");
+ sortByScore.setText(MessageManager.getString("label.seq_sort_by_score"));
sortByScore.addActionListener(new ActionListener()
{
public void actionPerformed(ActionEvent e)
}
});
cancel.setFont(JvSwingUtils.getLabelFont());
- cancel.setText("Cancel");
+ cancel.setText(MessageManager.getString("action.cancel"));
cancel.addActionListener(new ActionListener()
{
public void actionPerformed(ActionEvent e)
}
});
ok.setFont(JvSwingUtils.getLabelFont());
- ok.setText("OK");
+ ok.setText(MessageManager.getString("action.ok"));
ok.addActionListener(new ActionListener()
{
public void actionPerformed(ActionEvent e)
}
});
loadColours.setFont(JvSwingUtils.getLabelFont());
- loadColours.setText("Load Colours");
+ loadColours.setText(MessageManager.getString("label.load_colours"));
loadColours.addActionListener(new ActionListener()
{
public void actionPerformed(ActionEvent e)
}
});
saveColours.setFont(JvSwingUtils.getLabelFont());
- saveColours.setText("Save Colours");
+ saveColours.setText(MessageManager.getString("label.save_colours"));
saveColours.addActionListener(new ActionListener()
{
public void actionPerformed(ActionEvent e)
});
transparency.setMaximum(70);
- fetchDAS.setText("Fetch DAS Features");
+ fetchDAS.setText(MessageManager.getString("label.fetch_das_features"));
fetchDAS.addActionListener(new ActionListener()
{
public void actionPerformed(ActionEvent e)
fetchDAS_actionPerformed(e);
}
});
- saveDAS.setText("Save as default");
+ saveDAS.setText(MessageManager.getString("action.save_as_default"));
saveDAS.addActionListener(new ActionListener()
{
public void actionPerformed(ActionEvent e)
dasButtonPanel.setBorder(BorderFactory.createEtchedBorder());
dasSettingsPane.setBorder(null);
cancelDAS.setEnabled(false);
- cancelDAS.setText("Cancel Fetch");
+ cancelDAS.setText(MessageManager.getString("action.cancel_fetch"));
cancelDAS.addActionListener(new ActionListener()
{
public void actionPerformed(ActionEvent e)
{
complete();
JOptionPane.showInternalConfirmDialog(Desktop.desktop,
- "No das sources were selected.\n"
- + "Please select some sources and\n" + " try again.",
- "No Sources Selected", JOptionPane.DEFAULT_OPTION,
+ MessageManager.getString("label.no_das_sources_selected_warn"),
+ MessageManager.getString("label.no_das_sources_selected_title"), JOptionPane.DEFAULT_OPTION,
JOptionPane.INFORMATION_MESSAGE);
}
// width/g.getFontMetrics().stringWidth("Label"),
// height/g.getFontMetrics().getHeight())));
- g.drawString("Label", 0, 0);
+ g.drawString(MessageManager.getString("label.label"), 0, 0);
}
else
package jalview.gui;
import java.util.*;
-
import java.awt.event.*;
+
import javax.swing.*;
import jalview.datamodel.*;
import jalview.jbgui.*;
+import jalview.util.MessageManager;
/**
* DOCUMENT ME!
// 'SelectRegion' selection
if (!haveResults)
{
- JOptionPane.showInternalMessageDialog(this, "Finished searching",
+ JOptionPane.showInternalMessageDialog(this, MessageManager.getString("label.finished_searching"),
null, JOptionPane.INFORMATION_MESSAGE);
resIndex = -1;
seqIndex = 0;
package jalview.gui;
import jalview.bin.Cache;
+import jalview.util.MessageManager;
import jalview.ws.seqfetcher.DbSourceProxy;
import java.awt.BorderLayout;
JButton getDatabaseSelectorButton()
{
- final JButton viewdbs = new JButton("--- Select Database ---");
+ final JButton viewdbs = new JButton(MessageManager.getString("action.select_ddbb"));
viewdbs.addActionListener(new ActionListener()
{
if (allowMultiSelections)
{
- dbstatus.setText("Selected "
- + srcs.size()
- + " database"
- + (srcs.size() == 1 ? "" : "s")
- + " to fetch from"
- + (srcs.size() > 0 ? " with " + x + " test quer"
- + (x == 1 ? "y" : "ies") : "."));
+ dbstatus.setText(MessageManager.formatMessage("label.selected_database_to_fetch_from", new String[]{Integer.valueOf(srcs.size()).toString(),(srcs.size() == 1 ? "" : "s"),(srcs.size() > 0 ? " with " + x + " test quer" + (x == 1 ? "y" : "ies") : ".")}));
dbstatex.setText(" ");
}
else
{
if (nm.length() > 0)
{
- dbstatus.setText("Database: " + nm);
+ dbstatus.setText(MessageManager.formatMessage("label.database_param",new String[]{nm}));
if (qr.length() > 0)
{
- dbstatex.setText("Example: " + qr);
+ dbstatex.setText(MessageManager.formatMessage("label.example_param", new String[]{qr}));
}
else
{
import org.exolab.castor.xml.*;
import jalview.binding.*;
import jalview.schemes.*;
+import jalview.util.MessageManager;
import jalview.util.jarInputStreamProvider;
/**
System.err.println("Couldn't locate Jalview XML file : " + ex
+ "\n");
JOptionPane.showInternalMessageDialog(Desktop.desktop,
- "Couldn't locate " + file, "URL not found",
+ MessageManager.formatMessage("label.couldnt_locate", new String[]{file}),
+ MessageManager.getString("label.url_not_found"),
JOptionPane.WARNING_MESSAGE);
}
});
*/
package jalview.gui;
+import jalview.util.MessageManager;
+
import java.awt.Container;
import java.awt.Rectangle;
import java.awt.event.ActionEvent;
this.block = block;
ok.setOpaque(false);
- ok.setText("OK");
+ ok.setText(MessageManager.getString("action.ok"));
ok.addActionListener(new ActionListener()
{
public void actionPerformed(ActionEvent e)
}
});
cancel.setOpaque(false);
- cancel.setText("Cancel");
+ cancel.setText(MessageManager.getString("action.cancel"));
cancel.addActionListener(new ActionListener()
{
public void actionPerformed(ActionEvent e)
import jalview.datamodel.*;
import jalview.jbgui.*;
+import jalview.util.MessageManager;
import jalview.viewmodel.PCAModel;
/**
final JPanel progressPanel = (JPanel) progressBars.get(new Long(id));
if (handler.canCancel())
{
- JButton cancel = new JButton("Cancel");
+ JButton cancel = new JButton(MessageManager.getString("action.cancel"));
final IProgressIndicator us = this;
cancel.addActionListener(new ActionListener()
{
import jalview.io.*;
import jalview.jbgui.*;
import jalview.schemes.*;
+import jalview.util.MessageManager;
/**
* DOCUMENT ME!
while (!valid)
{
if (JOptionPane.showInternalConfirmDialog(Desktop.desktop, link,
- "New sequence URL link", JOptionPane.OK_CANCEL_OPTION, -1,
+ MessageManager.getString("label.new_sequence_url_link"), JOptionPane.OK_CANCEL_OPTION, -1,
null) == JOptionPane.OK_OPTION)
{
if (link.checkValid())
if (index == -1)
{
JOptionPane.showInternalMessageDialog(Desktop.desktop,
- "No link selected!", "No link selected",
+ MessageManager.getString("label.no_link_selected"), MessageManager.getString("label.no_link_selected"),
JOptionPane.WARNING_MESSAGE);
return;
}
{
if (JOptionPane.showInternalConfirmDialog(Desktop.desktop, link,
- "New sequence URL link", JOptionPane.OK_CANCEL_OPTION, -1,
+ MessageManager.getString("label.new_sequence_url_link"), JOptionPane.OK_CANCEL_OPTION, -1,
null) == JOptionPane.OK_OPTION)
{
if (link.checkValid())
if (index == -1)
{
JOptionPane.showInternalMessageDialog(Desktop.desktop,
- "No link selected!", "No link selected",
+ MessageManager.getString("label.no_link_selected"), MessageManager.getString("label.no_link_selected"),
JOptionPane.WARNING_MESSAGE);
return;
}
package jalview.gui;
import java.util.*;
-
import java.awt.*;
import java.awt.event.*;
+
import javax.swing.*;
import jalview.api.RotatableCanvasI;
import jalview.datamodel.*;
import jalview.math.*;
+import jalview.util.MessageManager;
/**
* DOCUMENT ME!
if (points == null)
{
g.setFont(new Font("Verdana", Font.PLAIN, 18));
- g.drawString("Calculating PCA....", 20, getHeight() / 2);
+ g.drawString(MessageManager.getString("label.calculating_pca")+ "....", 20, getHeight() / 2);
}
else
{
import java.awt.*;
import java.awt.event.*;
+
import javax.swing.*;
import jalview.datamodel.*;
+import jalview.util.MessageManager;
/**
* DOCUMENT ME!
if (reveal != null && reveal[0] > startx && reveal[0] < endx)
{
- gg.drawString("Reveal Columns", reveal[0] * av.charWidth, 0);
+ gg.drawString(MessageManager.getString("label.reveal_columns"), reveal[0] * av.charWidth, 0);
}
}
import jalview.io.SequenceAnnotationReport;
import jalview.schemes.*;
import jalview.structure.*;
+import jalview.util.MessageManager;
/**
* DOCUMENT ME!
if (av.wrapAlignment && seq > av.getAlignment().getHeight())
{
JOptionPane.showInternalMessageDialog(Desktop.desktop,
- "Cannot edit annotations in wrapped view.",
- "Wrapped view - no edit", JOptionPane.WARNING_MESSAGE);
+ MessageManager.getString("label.cannot_edit_annotations_in_wrapped_view"),
+ MessageManager.getString("label.wrapped_view_no_edit"), JOptionPane.WARNING_MESSAGE);
return;
}
import jalview.datamodel.*;
import jalview.io.*;
import jalview.util.DBRefUtils;
+import jalview.util.MessageManager;
import jalview.ws.dbsources.das.api.DasSourceRegistryI;
import jalview.ws.seqfetcher.DbSourceProxy;
import java.awt.BorderLayout;
public void run()
{
JOptionPane.showInternalMessageDialog(Desktop.desktop, error,
- "Error Retrieving Data", JOptionPane.WARNING_MESSAGE);
+ MessageManager.getString("label.error_retrieving_data"), JOptionPane.WARNING_MESSAGE);
}
});
}
if (tree == null)
{
- g.drawString("Calculating tree....", 20, getHeight() / 2);
+ g.drawString(MessageManager.getString("label.calculating_tree") + "....", 20, getHeight() / 2);
}
else
{
import jalview.schemes.ColourSchemeI;
import jalview.schemes.ResidueProperties;
import jalview.schemes.UserColourScheme;
+import jalview.util.MessageManager;
import java.awt.Color;
import java.awt.Font;
if (schemeName.getText().trim().length() < 1)
{
JOptionPane.showInternalMessageDialog(Desktop.desktop,
- "User colour scheme must have a name!",
- "No name for colour scheme", JOptionPane.WARNING_MESSAGE);
+ MessageManager.getString("label.user_colour_scheme_must_have_name"),
+ MessageManager.getString("label.no_name_colour_scheme"), JOptionPane.WARNING_MESSAGE);
return;
}
{
int reply = JOptionPane.showInternalConfirmDialog(
Desktop.desktop,
- "Colour scheme " + schemeName.getText() + " exists."
- + "\nContinue saving colour scheme as "
- + schemeName.getText() + "?",
- "Duplicate scheme name", JOptionPane.YES_NO_OPTION);
+ MessageManager.formatMessage("label.colour_scheme_exists_overwrite", new String[]{schemeName.getText(),schemeName.getText()}),
+ MessageManager.getString("label.duplicate_scheme_name"), JOptionPane.YES_NO_OPTION);
if (reply != JOptionPane.YES_OPTION)
{
return;
*/
package jalview.gui;
+import jalview.util.MessageManager;
+
import java.io.*;
import java.net.*;
jalview.bin.Cache.log.info("Prompting user for questionnaire at "
+ qurl);
int reply = JOptionPane.showInternalConfirmDialog(Desktop.desktop,
- "There is a new Questionnaire available."
- + "Would you like to complete it now ?\n",
- "Jalview User Survey", JOptionPane.YES_NO_OPTION,
+ MessageManager.getString("label.jalview_new_questionnaire"),
+ MessageManager.getString("label.jalview_user_survey"), JOptionPane.YES_NO_OPTION,
JOptionPane.QUESTION_MESSAGE);
if (reply == JOptionPane.YES_OPTION)
import javax.swing.text.html.StyleSheet;
import jalview.jbgui.*;
+import jalview.util.MessageManager;
import jalview.ws.WSClientI;
/**
switch (currentStatus)
{
case STATE_QUEUING:
- g.drawString(title.concat(" - queuing"), 60, 30);
+ g.drawString(title.concat(" - ").concat(MessageManager.getString("label.state_queueing")), 60, 30);
break;
case STATE_RUNNING:
- g.drawString(title.concat(" - running"), 60, 30);
+ g.drawString(title.concat(" - ").concat(MessageManager.getString("label.state_running")), 60, 30);
break;
case STATE_STOPPED_OK:
- g.drawString(title.concat(" - complete"), 60, 30);
+ g.drawString(title.concat(" - ").concat(MessageManager.getString("label.state_completed")), 60, 30);
break;
case STATE_CANCELLED_OK:
- g.drawString(title.concat(" - job cancelled!"), 60, 30);
+ g.drawString(title.concat(" - ").concat(MessageManager.getString("label.state_job_cancelled")), 60, 30);
break;
case STATE_STOPPED_ERROR:
- g.drawString(title.concat(" - job error!"), 60, 30);
+ g.drawString(title.concat(" - ").concat(MessageManager.getString("label.state_job_error")), 60, 30);
break;
case STATE_STOPPED_SERVERERROR:
- g.drawString(title.concat(" - Server Error! (try later)"), 60, 30);
+ g.drawString(title.concat(" - ").concat(MessageManager.getString("label.server_error_try_later")), 60, 30);
break;
}
final JPanel progressPanel = (JPanel) progressBars.get(new Long(id));
if (handler.canCancel())
{
- JButton cancel = new JButton("Cancel");
+ JButton cancel = new JButton(MessageManager.getString("action.cancel"));
final IProgressIndicator us = this;
cancel.addActionListener(new ActionListener()
{
import jalview.gui.OptsAndParamsPage.OptionBox;
import jalview.gui.OptsAndParamsPage.ParamBox;
+import jalview.util.MessageManager;
import jalview.ws.jws2.JabaParamStore;
import jalview.ws.jws2.JabaPreset;
import jalview.ws.jws2.Jws2Discoverer;
GridBagLayout gbl = new GridBagLayout();
SetNamePanel.setLayout(gbl);
- JLabel setNameLabel = new JLabel("Current parameter set name :");
+ JLabel setNameLabel = new JLabel(MessageManager.getString("label.current_parameter_set_name"));
setNameLabel.setFont(new java.awt.Font("Verdana", Font.PLAIN, 10));
setNameInfo.add(setNameLabel);
import jalview.bin.Cache;
import jalview.jbgui.GWsPreferences;
+import jalview.util.MessageManager;
import jalview.ws.jws2.Jws2Discoverer;
import jalview.ws.rest.RestServiceDescription;
JTextField urltf = new JTextField(url, 40);
JPanel panel = new JPanel(new BorderLayout());
JPanel pane12 = new JPanel(new BorderLayout());
- pane12.add(new JLabel("URL: "), BorderLayout.CENTER);
+ pane12.add(new JLabel(MessageManager.getString("label.url")), BorderLayout.CENTER);
pane12.add(urltf, BorderLayout.EAST);
panel.add(pane12, BorderLayout.NORTH);
boolean valid = false;
{
valid = false;
JOptionPane.showInternalMessageDialog(Desktop.desktop,
- "Invalid URL !");
+ MessageManager.getString("label.invalid_url"));
}
}
if (valid && resp == JOptionPane.OK_OPTION)
import jalview.datamodel.*;
import jalview.gui.*;
+import jalview.util.MessageManager;
public class FileLoader implements Runnable
{
public void run()
{
JOptionPane.showInternalMessageDialog(Desktop.desktop,
- errorMessage, "Error loading file",
+ errorMessage, MessageManager.getString("label.error_loading_file"),
JOptionPane.WARNING_MESSAGE);
}
});
public void run()
{
javax.swing.JOptionPane.showInternalMessageDialog(
- Desktop.desktop, "Encountered problems opening " + file
- + "!!", "File open error",
+ Desktop.desktop, MessageManager.formatMessage("label.problems_opening_file", new String[]{file}),
+ MessageManager.getString("label.file_open_error"),
javax.swing.JOptionPane.WARNING_MESSAGE);
}
});
package jalview.jbgui;
import jalview.schemes.ColourSchemeProperty;
+import jalview.util.MessageManager;
import java.awt.BorderLayout;
import java.awt.Color;
int option = JOptionPane.showInternalConfirmDialog(
jalview.gui.Desktop.desktop,
- "Remove from default list?",
- "Remove user defined colour",
+ MessageManager.getString("label.remove_from_default_list"),
+ MessageManager.getString("label.remove_user_defined_colour"),
JOptionPane.YES_NO_OPTION);
if (option == JOptionPane.YES_OPTION)
{
package jalview.jbgui;
import jalview.gui.JvSwingUtils;
+import jalview.util.MessageManager;
import java.awt.BorderLayout;
import java.awt.event.ActionEvent;
name = new JTextArea(1, 12);
JvSwingUtils.mgAddtoLayout(cpanel,
- "Short descriptive name for service", new JLabel("Name:"),
+ "Short descriptive name for service", new JLabel(MessageManager.getString("label.name")),
name, "wrap");
action = new JComboBox();
JvSwingUtils
.mgAddtoLayout(
cpanel,
"What kind of function the service performs (e.g. alignment, analysis, search, etc).",
- new JLabel("Service Action:"), action, "wrap");
+ new JLabel(MessageManager.getString("label.service_action")), action, "wrap");
descr = new JTextArea(4, 60);
descrVp = new JScrollPane();
descrVp.setViewportView(descr);
.mgAddtoLayout(
cpanel,
"URL to post data to service. Include any special parameters needed here",
- new JLabel("POST URL:"), urlVp, "wrap");
+ new JLabel(MessageManager.getString("label.post_url")), urlVp, "wrap");
urlsuff = new JTextArea();
urlsuff.setColumns(60);
.mgAddtoLayout(
cpanel,
"Optional suffix added to URL when retrieving results from service",
- new JLabel("URL Suffix:"), urlsuff, "wrap");
+ new JLabel(MessageManager.getString("label.url_suffix")), urlsuff, "wrap");
// input options
// details.add(cpanel = new JPanel(), BorderLayout.CENTER);
// cpanel.setLayout(new FlowLayout());
- hSeparable = new JCheckBox("per Sequence");
+ hSeparable = new JCheckBox(MessageManager.getString("label.per_seq"));
hSeparable
.setToolTipText("<html>"
+ JvSwingUtils
}
});
- vSeparable = new JCheckBox("Results are vertically separable");
+ vSeparable = new JCheckBox(MessageManager.getString("label.result_vertically_separable"));
vSeparable
.setToolTipText("<html>"
+ JvSwingUtils
--- /dev/null
+package jalview.util;
+
+import java.text.MessageFormat;
+import java.util.Locale;
+import java.util.ResourceBundle;
+import java.util.logging.Logger;
+
+/**
+ *
+ * @author David Roldan Martinez
+ * @author Thomas Abeel
+ *
+ *
+ */
+public class MessageManager {
+
+ private static ResourceBundle rb;
+
+ private static Logger log=Logger.getLogger(MessageManager.class.getCanonicalName());
+
+ private static Locale loc = Locale.getDefault();
+
+
+
+ static{
+ /* Localize Java dialogs */
+ Locale.setDefault(loc);
+ /* Getting messages for GV */
+ log.info("Getting messages for lang: "+loc);
+ rb = ResourceBundle.getBundle("lang.Messages", loc);
+ log.finest("Language keys: "+rb.keySet());
+
+ }
+
+ public static String getString(String key){
+ String value = "[missing key] " + key;
+ try{
+ value = rb.getString(key);
+ }catch(Exception e){
+ log.warning("I18N missing: "+loc+"\t"+key);
+ }
+ return value;
+ }
+
+ public static Locale getLocale() {
+ return loc;
+ }
+ public static String formatMessage(String key, Object[] params){
+ return MessageFormat.format(rb.getString(key), params);
+ }
+}
git://source.jalview.org / jalview.git / commitdiff