No longer used

diff --git a/src/jalview/datamodel/SuperGroup.java b/src/jalview/datamodel/SuperGroup.java
deleted file mode 100755 (executable)
index 6c0e604..0000000
--- a/src/jalview/datamodel/SuperGroup.java
+++ /dev/null
@@ -1,177 +0,0 @@
-/*\r
-* Jalview - A Sequence Alignment Editor and Viewer\r
-* Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
-*\r
-* This program is free software; you can redistribute it and/or\r
-* modify it under the terms of the GNU General Public License\r
-* as published by the Free Software Foundation; either version 2\r
-* of the License, or (at your option) any later version.\r
-*\r
-* This program is distributed in the hope that it will be useful,\r
-* but WITHOUT ANY WARRANTY; without even the implied warranty of\r
-* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the\r
-* GNU General Public License for more details.\r
-*\r
-* You should have received a copy of the GNU General Public License\r
-* along with this program; if not, write to the Free Software\r
-* Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA\r
-*/\r
-package jalview.datamodel;\r
-\r
-import jalview.schemes.*;\r
-\r
-import java.util.*;\r
-\r
-\r
-/**\r
- * DOCUMENT ME!\r
- *\r
- * @author $author$\r
- * @version $Revision$\r
- */\r
-public class SuperGroup\r
-{\r
-    String groupName;\r
-    boolean displayBoxes;\r
-    boolean displayText;\r
-    boolean colourText;\r
-\r
-    /** DOCUMENT ME!! */\r
-    public ColourSchemeI cs;\r
-    Vector sequenceGroups = new Vector();\r
-\r
-    /**\r
-     * Creates a new SuperGroup object.\r
-     */\r
-    public SuperGroup()\r
-    {\r
-        groupName = "Super group";\r
-        this.displayBoxes = true;\r
-        this.displayText = true;\r
-        this.colourText = false;\r
-        cs = null;\r
-    }\r
-\r
-    /**\r
-     * Creates a new SuperGroup object.\r
-     *\r
-     * @param groupName DOCUMENT ME!\r
-     * @param scheme DOCUMENT ME!\r
-     * @param displayBoxes DOCUMENT ME!\r
-     * @param displayText DOCUMENT ME!\r
-     * @param colourText DOCUMENT ME!\r
-     */\r
-    public SuperGroup(String groupName, ColourSchemeI scheme,\r
-        boolean displayBoxes, boolean displayText, boolean colourText)\r
-    {\r
-        this.groupName = groupName;\r
-        this.displayBoxes = displayBoxes;\r
-        this.displayText = displayText;\r
-        this.colourText = colourText;\r
-        this.cs = scheme;\r
-    }\r
-\r
-    /**\r
-     * DOCUMENT ME!\r
-     *\r
-     * @return DOCUMENT ME!\r
-     */\r
-    public String getName()\r
-    {\r
-        return groupName;\r
-    }\r
-\r
-    /**\r
-     * DOCUMENT ME!\r
-     *\r
-     * @param name DOCUMENT ME!\r
-     */\r
-    public void setName(String name)\r
-    {\r
-        groupName = name;\r
-    }\r
-\r
-    /**\r
-     * DOCUMENT ME!\r
-     *\r
-     * @param sg DOCUMENT ME!\r
-     */\r
-    public void addGroup(SequenceGroup sg)\r
-    {\r
-        if (!sequenceGroups.contains(sg))\r
-        {\r
-            sequenceGroups.addElement(sg);\r
-        }\r
-    }\r
-\r
-    /**\r
-     * DOCUMENT ME!\r
-     *\r
-     * @param sg DOCUMENT ME!\r
-     */\r
-    public void addOrRemove(SequenceGroup sg)\r
-    {\r
-        if (sequenceGroups.contains(sg))\r
-        {\r
-            deleteGroup(sg);\r
-        }\r
-        else\r
-        {\r
-            addGroup(sg);\r
-        }\r
-    }\r
-\r
-    /**\r
-     * DOCUMENT ME!\r
-     *\r
-     * @param sg DOCUMENT ME!\r
-     */\r
-    public void deleteGroup(SequenceGroup sg)\r
-    {\r
-        sequenceGroups.removeElement(sg);\r
-    }\r
-\r
-    /**\r
-     * DOCUMENT ME!\r
-     *\r
-     * @param sg DOCUMENT ME!\r
-     */\r
-    public void setSuperGroupProperties(SequenceGroup sg)\r
-    {\r
-        cs = sg.cs;\r
-        colourText = sg.colourText;\r
-        displayText = sg.displayText;\r
-        displayBoxes = sg.displayBoxes;\r
-\r
-        for (int i = 0; i < sequenceGroups.size(); i++)\r
-        {\r
-            SequenceGroup temp = (SequenceGroup) sequenceGroups.elementAt(i);\r
-            temp.cs = sg.cs;\r
-            temp.colourText = sg.colourText;\r
-            temp.displayText = sg.displayText;\r
-            temp.displayBoxes = sg.displayBoxes;\r
-        }\r
-    }\r
-\r
-    /**\r
-     * DOCUMENT ME!\r
-     *\r
-     * @return DOCUMENT ME!\r
-     */\r
-    public int getSize()\r
-    {\r
-        return sequenceGroups.size();\r
-    }\r
-\r
-    /**\r
-     * DOCUMENT ME!\r
-     *\r
-     * @param i DOCUMENT ME!\r
-     *\r
-     * @return DOCUMENT ME!\r
-     */\r
-    public SequenceGroup getGroupeAt(int i)\r
-    {\r
-        return (SequenceGroup) sequenceGroups.elementAt(i);\r
-    }\r
-}\r