import javax.swing.event.*;\r
\r
\r
+\r
/**\r
* DOCUMENT ME!\r
*\r
AlignmentPanel ap;\r
SequenceGroup seqGroup;\r
Vector selectedButtons;\r
- Vector oldColours = new Vector();\r
ColourSchemeI oldColourScheme;\r
JInternalFrame frame;\r
\r
super();\r
frame = new JInternalFrame();\r
frame.setContentPane(this);\r
- Desktop.addInternalFrame(frame, "User Defined Colours", 450, 530, false);\r
+ Desktop.addInternalFrame(frame, "User Defined Colours", 720, 370, true);\r
\r
if (System.getProperty("os.name").startsWith("Mac"))\r
{\r
oldColourScheme = ap.av.getGlobalColourScheme();\r
}\r
\r
+ if (oldColourScheme instanceof UserColourScheme)\r
+ {\r
+ schemeName.setText( ( (UserColourScheme) oldColourScheme).getName());\r
+ }\r
for (int i = 0; i < 20; i++)\r
{\r
makeButton(ResidueProperties.aa2Triplet.get(ResidueProperties.aa[i]) +\r
makeButton("B", "B");\r
makeButton("Z", "Z");\r
makeButton("X", "X");\r
- makeButton("Gap", "'.','-',' '");\r
-\r
- if (jalview.bin.Cache.getProperty("USER_DEFINED_COLOUR") != null)\r
- {\r
- loadColours(jalview.bin.Cache.getProperty("USER_DEFINED_COLOUR"));\r
- }\r
+ makeButton("Gap", "-");\r
}\r
\r
/**\r
}\r
catch (Exception ex)\r
{\r
+ // ex.printStackTrace();\r
}\r
\r
button.setBackground(col);\r
- oldColours.addElement(col);\r
button.setText(label);\r
button.setForeground(col.darker().darker().darker());\r
button.setFont(new java.awt.Font("Verdana", 1, 10));\r
*/\r
protected void applyButton_actionPerformed(ActionEvent e)\r
{\r
- Color[] newColours = new Color[24];\r
-\r
- for (int i = 0; i < 24; i++)\r
- {\r
- JButton button = (JButton) buttonPanel.getComponent(i);\r
- newColours[i] = button.getBackground();\r
- }\r
-\r
- UserColourScheme ucs = new UserColourScheme(newColours);\r
- ucs.setThreshold(0, ap.av.getIgnoreGapsConsensus());\r
+ UserColourScheme ucs = getSchemeFromGUI();\r
+ ucs.setName(schemeName.getText());\r
\r
if (seqGroup != null)\r
{\r
}\r
}\r
\r
+ UserColourScheme getSchemeFromGUI()\r
+ {\r
+ Color[] newColours = new Color[24];\r
+\r
+ for (int i = 0; i < 24; i++)\r
+ {\r
+ JButton button = (JButton) buttonPanel.getComponent(i);\r
+ newColours[i] = button.getBackground();\r
+ }\r
+\r
+ UserColourScheme ucs = new UserColourScheme(newColours);\r
+ ucs.setThreshold(0, ap.av.getIgnoreGapsConsensus());\r
+\r
+ return ucs;\r
+ }\r
+\r
+\r
+\r
/**\r
* DOCUMENT ME!\r
*\r
{\r
File choice = chooser.getSelectedFile();\r
jalview.bin.Cache.setProperty("LAST_DIRECTORY", choice.getParent());\r
- jalview.bin.Cache.setProperty("USER_DEFINED_COLOUR",\r
+ String defaultColours = jalview.bin.Cache.getDefault("USER_DEFINED_COLOURS",\r
choice.getPath());\r
+ if (defaultColours.indexOf(choice.getPath()) == -1)\r
+ defaultColours = defaultColours.concat("|").concat(choice.getPath());\r
+\r
+ jalview.bin.Cache.setProperty("USER_DEFINED_COLOURS", defaultColours);\r
+\r
\r
- Color[] colors = loadColours(choice.getAbsolutePath());\r
+ UserColourScheme ucs = loadColours(choice.getAbsolutePath());\r
+ Color[] colors = ucs.getColours();\r
+ schemeName.setText(ucs.getName());\r
\r
for (int i = 0; i < colors.length; i++)\r
{\r
*/\r
public static UserColourScheme loadDefaultColours()\r
{\r
- if (jalview.bin.Cache.getProperty("USER_DEFINED_COLOUR") != null)\r
+ String colours = jalview.bin.Cache.getProperty("USER_DEFINED_COLOURS");\r
+ if ( colours != null)\r
{\r
- return loadDefaultColours(jalview.bin.Cache.getProperty(\r
- "USER_DEFINED_COLOUR"));\r
+ if(colours.indexOf("|")>-1)\r
+ colours = colours.substring(0, colours.indexOf("|"));\r
+\r
+ return loadColours(colours);\r
}\r
else\r
{\r
*\r
* @return DOCUMENT ME!\r
*/\r
- public static UserColourScheme loadDefaultColours(String file)\r
+ public static UserColourScheme loadColours(String file)\r
{\r
- UserColourScheme ucs = null;\r
- Color[] cols = loadColours(file);\r
-\r
- if (cols != null)\r
- {\r
- ucs = new UserColourScheme(cols);\r
- }\r
-\r
- return ucs;\r
- }\r
-\r
- static Color[] loadColours(String file)\r
- {\r
- Color[] newColours = null;\r
+ UserColourScheme ucs = null;\r
+ Color[] newColours = null;\r
\r
try\r
{\r
InputStreamReader in = new InputStreamReader(new FileInputStream(\r
file), "UTF-8");\r
\r
- jalview.binding.JalviewUserColours ucs = new jalview.binding.JalviewUserColours();\r
- ucs = (jalview.binding.JalviewUserColours) ucs.unmarshal(in);\r
+ jalview.binding.JalviewUserColours jucs = new jalview.binding.JalviewUserColours();\r
+ jucs = (jalview.binding.JalviewUserColours) jucs.unmarshal(in);\r
\r
- newColours = new Color[ucs.getColourCount()];\r
+ newColours = new Color[jucs.getColourCount()];\r
\r
for (int i = 0; i < 24; i++)\r
{\r
- newColours[i] = new Color(Integer.parseInt(\r
- ucs.getColour(i).getRGB(), 16));\r
+ newColours[i] = new Color(Integer.parseInt(\r
+ jucs.getColour(i).getRGB(), 16));\r
}\r
+ if (newColours != null)\r
+ {\r
+ ucs = new UserColourScheme(newColours);\r
+ ucs.setName( jucs.getSchemeName() );\r
+ }\r
+\r
}\r
catch (Exception ex)\r
{\r
- System.out.println("Error loading UserColourFile " + file);\r
+ System.out.println("Error loading User ColourFile\n"+ex);\r
}\r
\r
- return newColours;\r
+\r
+ return ucs;\r
}\r
\r
/**\r
*/\r
protected void savebutton_actionPerformed(ActionEvent e)\r
{\r
+ if(schemeName.getText().trim().length()<1)\r
+ {\r
+ JOptionPane.showInternalMessageDialog(Desktop.desktop,\r
+ "User colour scheme must have a name!",\r
+ "No name for colour scheme",\r
+ JOptionPane.WARNING_MESSAGE);\r
+ return;\r
+ }\r
+\r
+ if(userColourSchemes!=null && userColourSchemes.containsKey(schemeName.getText()) )\r
+ {\r
+ int reply = JOptionPane.showInternalConfirmDialog(Desktop.desktop, "Colour scheme "+schemeName.getText()+ " exists."\r
+ +"\nContinue saving colour scheme as "+schemeName.getText()+"?",\r
+ "Duplicate scheme name", JOptionPane.YES_NO_OPTION);\r
+ if(reply != JOptionPane.YES_OPTION)\r
+ return;\r
+\r
+ userColourSchemes.remove(schemeName.getText());\r
+ }\r
JalviewFileChooser chooser = new JalviewFileChooser(jalview.bin.Cache.getProperty(\r
"LAST_DIRECTORY"), new String[] { "jc" },\r
new String[] { "Jalview User Colours" }, "Jalview User Colours");\r
if (value == JalviewFileChooser.APPROVE_OPTION)\r
{\r
String choice = chooser.getSelectedFile().getPath();\r
- jalview.bin.Cache.setProperty("USER_DEFINED_COLOUR", choice);\r
+ String defaultColours = jalview.bin.Cache.getDefault("USER_DEFINED_COLOURS", choice);\r
+ if(defaultColours.indexOf(choice)==-1)\r
+ {\r
+ if(defaultColours.length()<1)\r
+ defaultColours = defaultColours.concat("|");\r
+ defaultColours = defaultColours.concat(choice);\r
+ }\r
\r
- jalview.binding.JalviewUserColours ucs = new jalview.binding.JalviewUserColours();\r
+ userColourSchemes.put(schemeName.getText(), getSchemeFromGUI());\r
+\r
+ ap.alignFrame.updateUserColourMenu();\r
+\r
+ jalview.bin.Cache.setProperty("USER_DEFINED_COLOURS", defaultColours);\r
\r
+ jalview.binding.JalviewUserColours ucs = new jalview.binding.JalviewUserColours();\r
+ ucs.setSchemeName(schemeName.getText());\r
try\r
{\r
PrintWriter out = new PrintWriter(new OutputStreamWriter(\r
*/\r
protected void cancelButton_actionPerformed(ActionEvent e)\r
{\r
- Color[] newColours = new Color[24];\r
-\r
- for (int i = 0; i < 24; i++)\r
- {\r
- newColours[i] = (Color) oldColours.elementAt(i);\r
- buttonPanel.getComponent(i).setBackground(newColours[i]);\r
- }\r
-\r
- UserColourScheme ucs = new UserColourScheme(newColours);\r
-\r
if (seqGroup != null)\r
{\r
- seqGroup.cs = ucs;\r
+ seqGroup.cs = oldColourScheme;\r
}\r
else\r
{\r
- ap.av.setGlobalColourScheme(ucs);\r
+ ap.av.setGlobalColourScheme(oldColourScheme);\r
}\r
\r
ap.repaint();\r
{\r
}\r
}\r
+\r
+\r
+ static Hashtable userColourSchemes;\r
+\r
+ public static Hashtable getUserColourSchemes()\r
+ {\r
+ return userColourSchemes;\r
+ }\r
+\r
+ public static void initUserColourSchemes(String files)\r
+ {\r
+ userColourSchemes = new Hashtable();\r
+\r
+ if(files==null)\r
+ return;\r
+\r
+ // In case colours can't be loaded, we'll remove them\r
+ // from the default list here.\r
+ StringBuffer coloursFound = new StringBuffer();\r
+ StringTokenizer st = new StringTokenizer(files, "|");\r
+ while (st.hasMoreElements())\r
+ {\r
+ String file = st.nextToken();\r
+ try\r
+ {\r
+ UserColourScheme ucs = loadColours(file);\r
+ if (ucs != null)\r
+ {\r
+ if (coloursFound.length() > 0)\r
+ coloursFound.append("|");\r
+ coloursFound.append(file);\r
+ userColourSchemes.put(ucs.getName(), ucs);\r
+ }\r
+ }\r
+ catch (Exception ex)\r
+ {\r
+ System.out.println("Error loading User ColourFile\n" + ex);\r
+ }\r
+ }\r
+ if (!files.equals(coloursFound.toString()))\r
+ {\r
+ jalview.bin.Cache.setProperty("USER_DEFINED_COLOURS", coloursFound.toString());\r
+ }\r
+ }\r
}\r
protected JButton loadbutton = new JButton();\r
protected JButton savebutton = new JButton();\r
protected JButton cancelButton = new JButton();\r
- FlowLayout flowLayout1 = new FlowLayout();\r
-\r
- /**\r
+ JPanel namePanel = new JPanel();\r
+ JLabel jLabel1 = new JLabel();\r
+ protected JTextField schemeName = new JTextField();\r
+ BorderLayout borderLayout1 = new BorderLayout();\r
+ JPanel panel1 = new JPanel();\r
+ JPanel jPanel1 = new JPanel();\r
+ JPanel jPanel3 = new JPanel();\r
+ BorderLayout borderLayout3 = new BorderLayout();\r
+ GridBagLayout gridBagLayout1 = new GridBagLayout();\r
+ BorderLayout borderLayout2 = new BorderLayout();\r
+ FlowLayout flowLayout1 = new FlowLayout();\r
+ BorderLayout borderLayout4 = new BorderLayout();\r
+ JPanel jPanel4 = new JPanel();\r
+ BorderLayout borderLayout5 = new BorderLayout();\r
+ JPanel jPanel6 = new JPanel();\r
+ JTextArea jTextArea1 = new JTextArea();\r
+ /**\r
* Creates a new GUserDefinedColours object.\r
*/\r
public GUserDefinedColours()\r
*/\r
private void jbInit() throws Exception\r
{\r
- this.setLayout(flowLayout1);\r
+ this.setLayout(borderLayout4);\r
buttonPanel.setLayout(gridLayout);\r
- gridLayout.setColumns(6);\r
- gridLayout.setRows(4);\r
+ gridLayout.setColumns(4);\r
+ gridLayout.setRows(6);\r
okButton.setFont(new java.awt.Font("Verdana", 0, 11));\r
okButton.setText("OK");\r
okButton.addActionListener(new java.awt.event.ActionListener()\r
});\r
this.setBackground(new Color(212, 208, 223));\r
jPanel2.setOpaque(false);\r
- colorChooser.setOpaque(false);\r
- this.add(colorChooser, null);\r
- this.add(buttonPanel, null);\r
- this.add(jPanel2, null);\r
- jPanel2.add(okButton, null);\r
- jPanel2.add(applyButton, null);\r
- jPanel2.add(loadbutton, null);\r
- jPanel2.add(savebutton, null);\r
- jPanel2.add(cancelButton, null);\r
- }\r
+ jPanel2.setLayout(borderLayout3);\r
+ colorChooser.setOpaque(false);\r
+ jLabel1.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));\r
+ jLabel1.setText("Name");\r
+ namePanel.setMinimumSize(new Dimension(300, 31));\r
+ namePanel.setOpaque(false);\r
+ namePanel.setPreferredSize(new Dimension(240, 25));\r
+ namePanel.setToolTipText("");\r
+ namePanel.setLayout(borderLayout1);\r
+ schemeName.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));\r
+ schemeName.setPreferredSize(new Dimension(105, 21));\r
+ schemeName.setText("");\r
+ schemeName.setHorizontalAlignment(SwingConstants.CENTER);\r
+ panel1.setLayout(flowLayout1);\r
+ panel1.setOpaque(false);\r
+ jPanel1.setOpaque(false);\r
+ jPanel3.setOpaque(false);\r
+ jPanel4.setLayout(borderLayout5);\r
+ jPanel6.setBackground(Color.pink);\r
+ jPanel6.setMinimumSize(new Dimension(10, 70));\r
+ jPanel6.setOpaque(false);\r
+ jPanel6.setPreferredSize(new Dimension(10, 45));\r
+ jPanel6.setLayout(null);\r
+ jTextArea1.setFont(new java.awt.Font("Verdana", Font.ITALIC, 10));\r
+ jTextArea1.setOpaque(false);\r
+ jTextArea1.setPreferredSize(new Dimension(260, 34));\r
+ jTextArea1.setText(\r
+ "Save your colour scheme with a unique name and it will be added " +\r
+ "to the Colour menu.");\r
+ jTextArea1.setLineWrap(true);\r
+ jTextArea1.setRows(2);\r
+ jTextArea1.setWrapStyleWord(true);\r
+ jPanel3.add(savebutton);\r
+ jPanel3.add(loadbutton);\r
+ jPanel1.add(applyButton);\r
+ jPanel1.add(okButton);\r
+ jPanel1.add(cancelButton);\r
+ jPanel2.add(jPanel3, java.awt.BorderLayout.NORTH);\r
+ jPanel2.add(jPanel1, java.awt.BorderLayout.SOUTH);\r
+\r
+ namePanel.add(schemeName, java.awt.BorderLayout.CENTER);\r
+ namePanel.add(jLabel1, java.awt.BorderLayout.WEST);\r
+ panel1.add(namePanel, null);\r
+ panel1.add(buttonPanel, null);\r
+ panel1.add(jPanel2, null);\r
+ panel1.add(jTextArea1);\r
+\r
+ jPanel4.add(panel1, java.awt.BorderLayout.CENTER);\r
+ jPanel4.add(jPanel6, java.awt.BorderLayout.NORTH);\r
+ this.add(jPanel4, java.awt.BorderLayout.CENTER);\r
+ this.add(colorChooser, java.awt.BorderLayout.EAST);\r
+ }\r
\r
/**\r
* DOCUMENT ME!\r