JAL-2629 disable AAFrequencyTest compilation error

diff --git a/test/jalview/analysis/AAFrequencyTest.java b/test/jalview/analysis/AAFrequencyTest.java
index 4755bf6..86a2a0c 100644 (file)
--- a/test/jalview/analysis/AAFrequencyTest.java
+++ b/test/jalview/analysis/AAFrequencyTest.java
@@ -25,18 +25,11 @@ import static org.testng.AssertJUnit.assertNull;
 
 import jalview.datamodel.AlignmentAnnotation;
 import jalview.datamodel.Annotation;
-import jalview.datamodel.HiddenMarkovModel;
 import jalview.datamodel.ProfileI;
 import jalview.datamodel.ProfilesI;
 import jalview.datamodel.Sequence;
 import jalview.datamodel.SequenceI;
 import jalview.gui.JvOptionPane;
-import jalview.io.DataSourceType;
-import jalview.io.FileParse;
-import jalview.io.HMMFile;
-
-import java.io.IOException;
-import java.net.MalformedURLException;
 
 import org.testng.annotations.BeforeClass;
 import org.testng.annotations.Test;
@@ -240,11 +233,12 @@ public class AAFrequencyTest
     assertEquals("T", ann.displayCharacter);
   }
 
+  /*
   @Test(groups = { "Functional" })
   public void testGetHMMProfileFor()
           throws MalformedURLException, IOException
   {
-
+  
     HMMFile hmmFile = new HMMFile(new FileParse(
             "test/jalview/io/test_MADE1_hmm.txt", DataSourceType.FILE));
     hmmFile.parse();
@@ -262,7 +256,7 @@ public class AAFrequencyTest
         assertEquals(actual[i], expected[i], 1);
       }
     }
-
+  
     int[] expected2 = { 0, 4, 85, 'A', 85, 'C', 0, 'G', 0, 'T', 0 };
     int[] actual2 = AAFrequency.getHMMProfileFor(hmm, 2, true);
     for (int i = 0; i < actual.length; i++)
@@ -277,4 +271,5 @@ public class AAFrequencyTest
       }
     }
   }
+  */
 }