Jpredfile now uses the PileUpfile io class.

diff --git a/src/jalview/ws/JPredClient.java b/src/jalview/ws/JPredClient.java
index bb91119..3842e15 100755 (executable)
--- a/src/jalview/ws/JPredClient.java
+++ b/src/jalview/ws/JPredClient.java
@@ -105,7 +105,7 @@ public class JPredClient extends WSClient
       this.sequence = new ext.vamsas.Sequence();\r
       this.sequence.setId(msf[0].getName());\r
       this.sequence.setSeq(AlignSeq.extractGaps("-. ",msf[0].getSequence()));\r
-      jalview.io.MSFfile mwrite = new jalview.io.MSFfile();\r
+      jalview.io.PileUpfile mwrite = new jalview.io.PileUpfile();\r
       this.msa = new ext.vamsas.Msfalignment();\r
       msa.setMsf(mwrite.print(msf));\r
     }\r