--- /dev/null
+<html>
+<head>
+<title>jalviewjs.html and jalviewjs-core.html examples</title>
+</head>
+<body>
+<h1>jalviewjs.html and jalviewjs-core.html examples with new CLI style query parameters</h1>
+<ul>
+<li>
+<a href="jalviewjs.html?jv:open=examples/pae-example.jvp">jalviewjs.html?jv:open=examples/pae-example.jvp</a>
+</li>
+<li>
+<a href="jalviewjs.html?jv:open=examples/plantfdx.fa&jv:colour=gecos-ocean&jv:structure=../../examples/AF-P00221-F1-model_v4.pdb&jv:seqid=FER1_SPIOL&jv:tempfac=plddt&jv:paematrix=../../examples/AF-P00221-F1-predicted_aligned_error_v4.json&jv:noshowannotations&jv:debug=true">jalviewjs.html?jv:open=examples/plantfdx.fa&jv:colour=gecos-ocean&jv:structure=../../examples/AF-P00221-F1-model_v4.pdb&jv:seqid=FER1_SPIOL&jv:tempfac=plddt&jv:paematrix=../../examples/AF-P00221-F1-predicted_aligned_error_v4.json&jv:noshowannotations&jv:debug=true</a>
+</li>
+<li>
+<a href="jalviewjs-core.html?jv:open=examples/plantfdx.fa&jv:colour=gecos-ocean&jv:structure=../../examples/AF-P00221-F1-model_v4.pdb&jv:seqid=FER1_SPIOL&jv:tempfac=plddt&jv:paematrix=../../examples/AF-P00221-F1-predicted_aligned_error_v4.json&jv:noshowannotations&jv:debug=true">jalviewjs-core.html?jv:open=examples/plantfdx.fa&jv:colour=gecos-ocean&jv:structure=../../examples/AF-P00221-F1-model_v4.pdb&jv:seqid=FER1_SPIOL&jv:tempfac=plddt&jv:paematrix=../../examples/AF-P00221-F1-predicted_aligned_error_v4.json&jv:noshowannotations&jv:debug=true</a>
+</li>
+</ul>
+</body>
+</html>
+++ /dev/null
-<html>
-<head>
-<title>jalviewjs.html and jalviewjs-core.html examples</title>
-</head>
-<body>
-<h1>jalviewjs.html and jalviewjs-core.html examples with new CLI style query parameters</h1>
-<ul>
-<li>
-<a href="/jalviewjs.html?jv:open=examples/plantfdx.fa&jv:colour=gecos-ocean&jv:structure=../../examples/AF-P00221-F1-model_v4.pdb&jv:seqid=FER1_SPIOL&jv:tempfac=plddt&jv:paematrix=../../examples/AF-P00221-F1-predicted_aligned_error_v4.json&jv:noshowannotations&jv:debug=true">/jalviewjs.html?jv:open=examples/plantfdx.fa&jv:colour=gecos-ocean&jv:structure=../../examples/AF-P00221-F1-model_v4.pdb&jv:seqid=FER1_SPIOL&jv:tempfac=plddt&jv:paematrix=../../examples/AF-P00221-F1-predicted_aligned_error_v4.json&jv:noshowannotations&jv:debug=true</a>
-</li>
-<li>
-<a href="/jalviewjs-core.html?jv:open=examples/plantfdx.fa&jv:colour=gecos-ocean&jv:structure=../../examples/AF-P00221-F1-model_v4.pdb&jv:seqid=FER1_SPIOL&jv:tempfac=plddt&jv:paematrix=../../examples/AF-P00221-F1-predicted_aligned_error_v4.json&jv:noshowannotations&jv:debug=true">/jalviewjs-core.html?jv:open=examples/plantfdx.fa&jv:colour=gecos-ocean&jv:structure=../../examples/AF-P00221-F1-model_v4.pdb&jv:seqid=FER1_SPIOL&jv:tempfac=plddt&jv:paematrix=../../examples/AF-P00221-F1-predicted_aligned_error_v4.json&jv:noshowannotations&jv:debug=true</a>
-</li>
-</ul>
-</body>
-</html>