import org.testng.annotations.BeforeMethod;
import org.testng.annotations.Test;
-import MCview.PDBfile;
+import mc_view.PDBfile;
/**
* @author jimp
import org.testng.annotations.BeforeClass;
-import MCview.PDBfile;
+import mc_view.PDBfile;
/**
* This is not a unit test, rather it is a bulk End-to-End scan for sequences
import org.testng.annotations.BeforeClass;
import org.testng.annotations.Test;
-import MCview.PDBfile;
-
import compbio.util.FileUtil;
+import mc_view.PDBfile;
public class TestAnnotate3D
{
if (StructureImportSettings.getDefaultPDBFileParser()
.equals(StructureParser.JALVIEW_PARSER))
{
- assertTrue(MCview.PDBfile.isCalcIdForFile(aa, pdbId));
+ assertTrue(mc_view.PDBfile.isCalcIdForFile(aa, pdbId));
}
}
}
{
System.err.println("CalcId " + ana.getCalcId());
if (ana.getCalcId() != null
- && MCview.PDBfile.isCalcIdHandled(ana.getCalcId()))
+ && mc_view.PDBfile.isCalcIdHandled(ana.getCalcId()))
{
exists = true;
- if (MCview.PDBfile.isCalcIdForFile(ana, pdbentry.getId()))
+ if (mc_view.PDBfile.isCalcIdForFile(ana, pdbentry.getId()))
{
found = true;
}
import org.testng.annotations.BeforeTest;
import org.testng.annotations.Test;
-import MCview.Atom;
-import MCview.PDBfile;
+import mc_view.Atom;
+import mc_view.PDBfile;
public class SiftsClientTest
{
* along with Jalview. If not, see <http://www.gnu.org/licenses/>.
* The Jalview Authors are detailed in the 'AUTHORS' file.
*/
-package MCview;
+package mc_view;
import static org.testng.AssertJUnit.assertEquals;
* along with Jalview. If not, see <http://www.gnu.org/licenses/>.
* The Jalview Authors are detailed in the 'AUTHORS' file.
*/
-package MCview;
+package mc_view;
import static org.testng.AssertJUnit.assertEquals;
* along with Jalview. If not, see <http://www.gnu.org/licenses/>.
* The Jalview Authors are detailed in the 'AUTHORS' file.
*/
-package MCview;
+package mc_view;
import static org.testng.AssertJUnit.assertEquals;
import static org.testng.AssertJUnit.assertFalse;
* along with Jalview. If not, see <http://www.gnu.org/licenses/>.
* The Jalview Authors are detailed in the 'AUTHORS' file.
*/
-package MCview;
+package mc_view;
import static org.testng.AssertJUnit.assertEquals;
import static org.testng.AssertJUnit.assertFalse;
* along with Jalview. If not, see <http://www.gnu.org/licenses/>.
* The Jalview Authors are detailed in the 'AUTHORS' file.
*/
-package MCview;
+package mc_view;
import static org.testng.AssertJUnit.assertNull;
import static org.testng.AssertJUnit.assertSame;