* using LinkedHashMap keeps models ordered as added
*/
models = new LinkedHashMap<>();
- BLOSUM62 = loadScoreMatrix("scoreModel/blosum62.scm");
- PAM250 = loadScoreMatrix("scoreModel/pam250.scm");
- DNA = loadScoreMatrix("scoreModel/dna.scm");
- FOLDSEEK3DI = loadScoreMatrix("scoreModel/foldseek_mat3di.scm");
+ BLOSUM62 = loadScoreMatrix("scoreModel/blosum62.scm",true);
+ PAM250 = loadScoreMatrix("scoreModel/pam250.scm",true);
+ DNA = loadScoreMatrix("scoreModel/dna.scm",true);
++ FOLDSEEK3DI = loadScoreMatrix("scoreModel/foldseek_mat3di.scm",true);
registerScoreModel(new PIDModel());
registerScoreModel(new FeatureDistanceModel());
SECONDARYSTRUCTURE = loadScoreMatrix(