<p>
<strong>Colour schemes</strong>
</p>
- <p>Jalview allows the user to set a background colour for the
+ <p>Jalview allows the user to set a colour scheme for the
whole alignment view or for each group defined on regions within it.</p>
- <p>To change the background colour, simply select the colour from
+ <p>To change the colour for a view, simply select a new colour scheme from
the "Colour" menu.</p>
<p>To change the colour of a group, right click on any residue
within a group and use the popup menu to define the group colour.</p>
- <p>At the top of the "Colour" menu the tick box
- "Apply Background Colour to all groups". This is ticked by
+ <p>At the top of the "Colour" menu you'll see a tick box
+ "Apply Colour to all groups". This is ticked by
default so that a chosen colour scheme will be applied to all
existing groups. If you wish to maintain the colour scheme for
- defined groups, make sure you deselect this option before changing
- the background colour.</p>
+ defined groups, make sure you deselect this option before selecting
+ a new scheme in the Colour menu.</p>
<p>
The <strong>"Colour→<a
href="../colourSchemes/textcolour.html">Colour Text...</a>"