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JAL-2509 extend set of brackets recognised by stockholm parser
author
Jim Procter
<jprocter@issues.jalview.org>
Tue, 9 May 2017 16:58:27 +0000
(17:58 +0100)
committer
Jim Procter
<jprocter@issues.jalview.org>
Tue, 9 May 2017 16:58:27 +0000
(17:58 +0100)
src/jalview/io/StockholmFile.java
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diff --git
a/src/jalview/io/StockholmFile.java
b/src/jalview/io/StockholmFile.java
index
c2726a7
..
8527f8b
100644
(file)
--- a/
src/jalview/io/StockholmFile.java
+++ b/
src/jalview/io/StockholmFile.java
@@
-78,8
+78,8
@@
public class StockholmFile extends AlignFile
private static final Regex CLOSE_PAREN = new Regex("(>|\\])", ")");
- private static final Regex DETECT_BRACKETS = new Regex(
- "(<|>|\\[|\\]|\\(|\\))");
+ public static final Regex DETECT_BRACKETS = new Regex(
+ "(<|>|\\[|\\]|\\(|\\)|\\{|\\})");
StringBuffer out; // output buffer