OptionI option;
- JComboBox<String> val;
+ JComboBox<Object> val;
/**
* Constructs and adds labels and controls to the panel for one Option
/*
* drop-down list of choice options (if applicable)
*/
- JComboBox<String> choicebox;
+ JComboBox<Object> choicebox;
/*
* radio buttons as an alternative to combo box
* @param opt
* @return
*/
- protected static JComboBox<String> buildComboBox(OptionI opt)
+ protected static JComboBox<Object> buildComboBox(OptionI opt)
{
- JComboBox<String> cb = null;
+ JComboBox<Object> cb = null;
List<String> displayNames = opt.getDisplayNames();
if (displayNames != null)
{
- cb = JvSwingUtils.buildComboWithTooltips(displayNames,
+ List<Object> displayNamesObjects = new ArrayList<>();
+ displayNamesObjects.addAll(displayNames);
+ cb = JvSwingUtils.buildComboWithTooltips(displayNamesObjects,
opt.getPossibleValues());
}
else
/*
* load any HMMER profile
*/
- String hmmJarFile = jseqs.get(i).getHmmerProfile();
+ // TODO fix this
+
+ String hmmJarFile = jseqs.get(i).getHmmerProfile();
if (hmmJarFile != null && jprovider != null)
{
loadHmmerProfile(jprovider, hmmJarFile, al.getSequenceAt(i));
}
+
}
} // end !multipleview
// This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802
// See <a href="http://java.sun.com/xml/jaxb">http://java.sun.com/xml/jaxb</a>
// Any modifications to this file will be lost upon recompilation of the source schema.
-// Generated on: 2018.12.20 at 11:47:26 AM GMT
+// Generated on: 2019.06.06 at 04:31:20 PM BST
//
// This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802
// See <a href="http://java.sun.com/xml/jaxb">http://java.sun.com/xml/jaxb</a>
// Any modifications to this file will be lost upon recompilation of the source schema.
-// Generated on: 2018.12.20 at 11:47:26 AM GMT
+// Generated on: 2019.06.06 at 04:31:20 PM BST
//
// This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802
// See <a href="http://java.sun.com/xml/jaxb">http://java.sun.com/xml/jaxb</a>
// Any modifications to this file will be lost upon recompilation of the source schema.
-// Generated on: 2018.12.20 at 11:47:26 AM GMT
+// Generated on: 2019.06.06 at 04:31:20 PM BST
//
// This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802
// See <a href="http://java.sun.com/xml/jaxb">http://java.sun.com/xml/jaxb</a>
// Any modifications to this file will be lost upon recompilation of the source schema.
-// Generated on: 2018.12.20 at 11:47:26 AM GMT
+// Generated on: 2019.06.06 at 04:31:20 PM BST
//
// This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802
// See <a href="http://java.sun.com/xml/jaxb">http://java.sun.com/xml/jaxb</a>
// Any modifications to this file will be lost upon recompilation of the source schema.
-// Generated on: 2018.12.20 at 11:47:26 AM GMT
+// Generated on: 2019.06.06 at 04:31:20 PM BST
//
// This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802
// See <a href="http://java.sun.com/xml/jaxb">http://java.sun.com/xml/jaxb</a>
// Any modifications to this file will be lost upon recompilation of the source schema.
-// Generated on: 2018.12.20 at 11:47:26 AM GMT
+// Generated on: 2019.06.06 at 04:31:20 PM BST
//
// This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802
// See <a href="http://java.sun.com/xml/jaxb">http://java.sun.com/xml/jaxb</a>
// Any modifications to this file will be lost upon recompilation of the source schema.
-// Generated on: 2018.12.20 at 11:47:26 AM GMT
+// Generated on: 2019.06.06 at 04:31:20 PM BST
//
// This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802
// See <a href="http://java.sun.com/xml/jaxb">http://java.sun.com/xml/jaxb</a>
// Any modifications to this file will be lost upon recompilation of the source schema.
-// Generated on: 2018.12.20 at 11:47:26 AM GMT
+// Generated on: 2019.06.06 at 04:31:20 PM BST
//
// This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802
// See <a href="http://java.sun.com/xml/jaxb">http://java.sun.com/xml/jaxb</a>
// Any modifications to this file will be lost upon recompilation of the source schema.
-// Generated on: 2018.12.20 at 11:47:26 AM GMT
+// Generated on: 2019.06.06 at 04:31:20 PM BST
//
// This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802
// See <a href="http://java.sun.com/xml/jaxb">http://java.sun.com/xml/jaxb</a>
// Any modifications to this file will be lost upon recompilation of the source schema.
-// Generated on: 2018.12.20 at 11:47:26 AM GMT
+// Generated on: 2019.06.06 at 04:31:20 PM BST
//
// This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802
// See <a href="http://java.sun.com/xml/jaxb">http://java.sun.com/xml/jaxb</a>
// Any modifications to this file will be lost upon recompilation of the source schema.
-// Generated on: 2018.12.20 at 11:47:26 AM GMT
+// Generated on: 2019.06.06 at 04:31:20 PM BST
//
* </complexContent>
* </complexType>
* </element>
+ * <element name="hmmerProfile" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/>
* </sequence>
* <attribute name="colour" type="{http://www.w3.org/2001/XMLSchema}int" />
* <attribute name="start" use="required" type="{http://www.w3.org/2001/XMLSchema}int" />
* </complexContent>
* </complexType>
* </element>
+ * <element name="hmmerProfile" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/>
* </sequence>
* <attribute name="colour" type="{http://www.w3.org/2001/XMLSchema}int" />
* <attribute name="start" use="required" type="{http://www.w3.org/2001/XMLSchema}int" />
"features",
"pdbids",
"hiddenSequences",
- "rnaViewer"
+ "rnaViewer",
+ "hmmerProfile"
})
public static class JSeq {
protected List<Integer> hiddenSequences;
@XmlElement(namespace = "www.jalview.org")
protected List<JalviewModel.JSeq.RnaViewer> rnaViewer;
+ @XmlElement(namespace = "www.jalview.org")
+ protected String hmmerProfile;
@XmlAttribute(name = "colour")
protected Integer colour;
@XmlAttribute(name = "start", required = true)
}
/**
+ * Gets the value of the hmmerProfile property.
+ *
+ * @return
+ * possible object is
+ * {@link String }
+ *
+ */
+ public String getHmmerProfile() {
+ return hmmerProfile;
+ }
+
+ /**
+ * Sets the value of the hmmerProfile property.
+ *
+ * @param value
+ * allowed object is
+ * {@link String }
+ *
+ */
+ public void setHmmerProfile(String value) {
+ this.hmmerProfile = value;
+ }
+
+ /**
* Gets the value of the colour property.
*
* @return
// This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802
// See <a href="http://java.sun.com/xml/jaxb">http://java.sun.com/xml/jaxb</a>
// Any modifications to this file will be lost upon recompilation of the source schema.
-// Generated on: 2018.12.20 at 11:47:26 AM GMT
+// Generated on: 2019.06.06 at 04:31:20 PM BST
//
// This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802
// See <a href="http://java.sun.com/xml/jaxb">http://java.sun.com/xml/jaxb</a>
// Any modifications to this file will be lost upon recompilation of the source schema.
-// Generated on: 2018.12.20 at 11:47:26 AM GMT
+// Generated on: 2019.06.06 at 04:31:20 PM BST
//
// This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802
// See <a href="http://java.sun.com/xml/jaxb">http://java.sun.com/xml/jaxb</a>
// Any modifications to this file will be lost upon recompilation of the source schema.
-// Generated on: 2018.12.20 at 11:47:26 AM GMT
+// Generated on: 2019.06.06 at 04:31:20 PM BST
//
// This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802
// See <a href="http://java.sun.com/xml/jaxb">http://java.sun.com/xml/jaxb</a>
// Any modifications to this file will be lost upon recompilation of the source schema.
-// Generated on: 2018.12.20 at 11:47:26 AM GMT
+// Generated on: 2019.06.06 at 04:31:20 PM BST
//
// This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802
// See <a href="http://java.sun.com/xml/jaxb">http://java.sun.com/xml/jaxb</a>
// Any modifications to this file will be lost upon recompilation of the source schema.
-// Generated on: 2018.12.20 at 11:47:26 AM GMT
+// Generated on: 2019.06.06 at 04:31:20 PM BST
//
// This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802
// See <a href="http://java.sun.com/xml/jaxb">http://java.sun.com/xml/jaxb</a>
// Any modifications to this file will be lost upon recompilation of the source schema.
-// Generated on: 2018.12.20 at 11:47:26 AM GMT
+// Generated on: 2019.06.06 at 04:31:20 PM BST
//
// This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802
// See <a href="http://java.sun.com/xml/jaxb">http://java.sun.com/xml/jaxb</a>
// Any modifications to this file will be lost upon recompilation of the source schema.
-// Generated on: 2018.12.20 at 11:47:26 AM GMT
+// Generated on: 2019.06.06 at 04:31:20 PM BST
//
// This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802
// See <a href="http://java.sun.com/xml/jaxb">http://java.sun.com/xml/jaxb</a>
// Any modifications to this file will be lost upon recompilation of the source schema.
-// Generated on: 2018.12.20 at 11:47:26 AM GMT
+// Generated on: 2019.06.06 at 04:31:20 PM BST
//
// This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802
// See <a href="http://java.sun.com/xml/jaxb">http://java.sun.com/xml/jaxb</a>
// Any modifications to this file will be lost upon recompilation of the source schema.
-// Generated on: 2018.12.20 at 11:47:26 AM GMT
+// Generated on: 2019.06.06 at 04:31:20 PM BST
//
// This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802
// See <a href="http://java.sun.com/xml/jaxb">http://java.sun.com/xml/jaxb</a>
// Any modifications to this file will be lost upon recompilation of the source schema.
-// Generated on: 2018.12.20 at 11:47:26 AM GMT
+// Generated on: 2019.06.06 at 04:31:20 PM BST
//
// This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802
// See <a href="http://java.sun.com/xml/jaxb">http://java.sun.com/xml/jaxb</a>
// Any modifications to this file will be lost upon recompilation of the source schema.
-// Generated on: 2018.12.20 at 11:47:26 AM GMT
+// Generated on: 2019.06.06 at 04:31:20 PM BST
//
// This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802
// See <a href="http://java.sun.com/xml/jaxb">http://java.sun.com/xml/jaxb</a>
// Any modifications to this file will be lost upon recompilation of the source schema.
-// Generated on: 2018.12.20 at 11:47:26 AM GMT
+// Generated on: 2019.06.06 at 04:31:20 PM BST
//
// This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802
// See <a href="http://java.sun.com/xml/jaxb">http://java.sun.com/xml/jaxb</a>
// Any modifications to this file will be lost upon recompilation of the source schema.
-// Generated on: 2018.12.20 at 11:47:26 AM GMT
+// Generated on: 2019.06.06 at 04:31:20 PM BST
//
// This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802
// See <a href="http://java.sun.com/xml/jaxb">http://java.sun.com/xml/jaxb</a>
// Any modifications to this file will be lost upon recompilation of the source schema.
-// Generated on: 2018.12.20 at 11:47:26 AM GMT
+// Generated on: 2019.06.06 at 04:31:20 PM BST
//
@javax.xml.bind.annotation.XmlSchema(namespace = "www.vamsas.ac.uk/jalview/version2", elementFormDefault = javax.xml.bind.annotation.XmlNsForm.QUALIFIED)