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JAL-2755 update caller for method rename!
authorgmungoc <g.m.carstairs@dundee.ac.uk>
Fri, 20 Oct 2017 09:22:26 +0000 (10:22 +0100)
committergmungoc <g.m.carstairs@dundee.ac.uk>
Fri, 20 Oct 2017 09:22:26 +0000 (10:22 +0100)
src/jalview/io/vcf/VCFLoader.java patch | blob | history

diff --git a/src/jalview/io/vcf/VCFLoader.java b/src/jalview/io/vcf/VCFLoader.java
index 6309fe7..e381b26 100644 (file)
--- a/src/jalview/io/vcf/VCFLoader.java
+++ b/src/jalview/io/vcf/VCFLoader.java
@@ -855,7 +855,8 @@ public class VCFLoader
      * call (e.g.) http://rest.ensembl.org/map/human/GRCh38/17:45051610..45109016:1/GRCh37
      */
     EnsemblMap mapper = new EnsemblMap();
-    int[] mapping = mapper.getMapping(species, chromosome, fromRef, toRef,
+    int[] mapping = mapper.getAssemblyMapping(species, chromosome, fromRef,
+            toRef,
             queryRange);
 
     if (mapping == null)