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JAL-1842 adjust code to match changed semantics of FeatureSettingsModelI
author
gmungoc
<g.m.carstairs@dundee.ac.uk>
Thu, 6 Feb 2020 16:24:46 +0000
(16:24 +0000)
committer
gmungoc
<g.m.carstairs@dundee.ac.uk>
Thu, 6 Feb 2020 16:24:46 +0000
(16:24 +0000)
src/jalview/ext/ensembl/EnsemblGene.java
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diff --git
a/src/jalview/ext/ensembl/EnsemblGene.java
b/src/jalview/ext/ensembl/EnsemblGene.java
index
9c7ce63
..
461226b
100644
(file)
--- a/
src/jalview/ext/ensembl/EnsemblGene.java
+++ b/
src/jalview/ext/ensembl/EnsemblGene.java
@@
-629,10
+629,10
@@
public class EnsemblGene extends EnsemblSeqProxy
SequenceOntologyI so = SequenceOntologyFactory.getInstance();
@Override
- public boolean isFeatureDisplayed(String type)
+ public boolean isFeatureHidden(String type)
{
- return (so.isA(type, SequenceOntologyI.EXON)
- || so.isA(type, SequenceOntologyI.SEQUENCE_VARIANT));
+ return (!so.isA(type, SequenceOntologyI.EXON)
+ && !so.isA(type, SequenceOntologyI.SEQUENCE_VARIANT));
}
@Override