moved to: https://sites.google.com/site/cmzmasek/home/software/forester

diff --git a/forester/java/src/org/forester/analysis/AncestralTaxonomyInference.java b/forester/java/src/org/forester/analysis/AncestralTaxonomyInference.java
index 5a6a32a..9f18f81 100644 (file)
--- a/forester/java/src/org/forester/analysis/AncestralTaxonomyInference.java
+++ b/forester/java/src/org/forester/analysis/AncestralTaxonomyInference.java
@@ -20,7 +20,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.analysis;
 

diff --git a/forester/java/src/org/forester/analysis/AncestralTaxonomyInferenceException.java b/forester/java/src/org/forester/analysis/AncestralTaxonomyInferenceException.java
index dd65918..bb4bca0 100644 (file)
--- a/forester/java/src/org/forester/analysis/AncestralTaxonomyInferenceException.java
+++ b/forester/java/src/org/forester/analysis/AncestralTaxonomyInferenceException.java
@@ -22,7 +22,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.analysis;
 

diff --git a/forester/java/src/org/forester/analysis/TaxonomyDataManager.java b/forester/java/src/org/forester/analysis/TaxonomyDataManager.java
index 2bc654f..48b434c 100644 (file)
--- a/forester/java/src/org/forester/analysis/TaxonomyDataManager.java
+++ b/forester/java/src/org/forester/analysis/TaxonomyDataManager.java
@@ -22,7 +22,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.analysis;
 

diff --git a/forester/java/src/org/forester/application/confadd.java b/forester/java/src/org/forester/application/confadd.java
index 3fed60c..b48cde9 100644 (file)
--- a/forester/java/src/org/forester/application/confadd.java
+++ b/forester/java/src/org/forester/application/confadd.java
@@ -22,7 +22,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.application;
 

diff --git a/forester/java/src/org/forester/application/count_support.java b/forester/java/src/org/forester/application/count_support.java
index 3096e21..b57f3c5 100644 (file)
--- a/forester/java/src/org/forester/application/count_support.java
+++ b/forester/java/src/org/forester/application/count_support.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.application;
 

diff --git a/forester/java/src/org/forester/application/decorator.java b/forester/java/src/org/forester/application/decorator.java
index 8084ee2..ba79613 100644 (file)
--- a/forester/java/src/org/forester/application/decorator.java
+++ b/forester/java/src/org/forester/application/decorator.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.application;
 

diff --git a/forester/java/src/org/forester/application/gene_tree_preprocess.java b/forester/java/src/org/forester/application/gene_tree_preprocess.java
index bcb93f4..06f2803 100644 (file)
--- a/forester/java/src/org/forester/application/gene_tree_preprocess.java
+++ b/forester/java/src/org/forester/application/gene_tree_preprocess.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.application;
 

diff --git a/forester/java/src/org/forester/application/goac.java b/forester/java/src/org/forester/application/goac.java
index a753694..37b9d12 100644 (file)
--- a/forester/java/src/org/forester/application/goac.java
+++ b/forester/java/src/org/forester/application/goac.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.application;
 

diff --git a/forester/java/src/org/forester/application/gsdi.java b/forester/java/src/org/forester/application/gsdi.java
index 295e542..9e3f326 100644 (file)
--- a/forester/java/src/org/forester/application/gsdi.java
+++ b/forester/java/src/org/forester/application/gsdi.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.application;
 

diff --git a/forester/java/src/org/forester/application/mcc.java b/forester/java/src/org/forester/application/mcc.java
index 70b520f..23320fc 100644 (file)
--- a/forester/java/src/org/forester/application/mcc.java
+++ b/forester/java/src/org/forester/application/mcc.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.application;
 

diff --git a/forester/java/src/org/forester/application/nhx_too.java b/forester/java/src/org/forester/application/nhx_too.java
index 1d212f0..1061c5c 100644 (file)
--- a/forester/java/src/org/forester/application/nhx_too.java
+++ b/forester/java/src/org/forester/application/nhx_too.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.application;
 

diff --git a/forester/java/src/org/forester/application/nj.java b/forester/java/src/org/forester/application/nj.java
index 6bce553..0f1ef3e 100644 (file)
--- a/forester/java/src/org/forester/application/nj.java
+++ b/forester/java/src/org/forester/application/nj.java
@@ -22,7 +22,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.application;
 

diff --git a/forester/java/src/org/forester/application/obo_tool.java b/forester/java/src/org/forester/application/obo_tool.java
index 17281b7..abd1cba 100644 (file)
--- a/forester/java/src/org/forester/application/obo_tool.java
+++ b/forester/java/src/org/forester/application/obo_tool.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.application;
 

diff --git a/forester/java/src/org/forester/application/pccx.java b/forester/java/src/org/forester/application/pccx.java
index 44839c9..48ca75a 100644 (file)
--- a/forester/java/src/org/forester/application/pccx.java
+++ b/forester/java/src/org/forester/application/pccx.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.application;
 

diff --git a/forester/java/src/org/forester/application/pfam2go_extractor.java b/forester/java/src/org/forester/application/pfam2go_extractor.java
index edf1940..d9f4cd3 100644 (file)
--- a/forester/java/src/org/forester/application/pfam2go_extractor.java
+++ b/forester/java/src/org/forester/application/pfam2go_extractor.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.application;
 

diff --git a/forester/java/src/org/forester/application/pfam_go.java b/forester/java/src/org/forester/application/pfam_go.java
index 75f0381..475b5d4 100644 (file)
--- a/forester/java/src/org/forester/application/pfam_go.java
+++ b/forester/java/src/org/forester/application/pfam_go.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.application;
 

diff --git a/forester/java/src/org/forester/application/pfamacc2go.java b/forester/java/src/org/forester/application/pfamacc2go.java
index 69793ef..ce34dc7 100644 (file)
--- a/forester/java/src/org/forester/application/pfamacc2go.java
+++ b/forester/java/src/org/forester/application/pfamacc2go.java
@@ -22,7 +22,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.application;
 

diff --git a/forester/java/src/org/forester/application/pfamacc2pfamid.java b/forester/java/src/org/forester/application/pfamacc2pfamid.java
index 24da6d0..0abafb5 100644 (file)
--- a/forester/java/src/org/forester/application/pfamacc2pfamid.java
+++ b/forester/java/src/org/forester/application/pfamacc2pfamid.java
@@ -22,7 +22,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.application;
 

diff --git a/forester/java/src/org/forester/application/phyloxml_converter.java b/forester/java/src/org/forester/application/phyloxml_converter.java
index 24fe964..f82779c 100644 (file)
--- a/forester/java/src/org/forester/application/phyloxml_converter.java
+++ b/forester/java/src/org/forester/application/phyloxml_converter.java
@@ -22,7 +22,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.application;
 

diff --git a/forester/java/src/org/forester/application/rio.java b/forester/java/src/org/forester/application/rio.java
index 1e8745f..a1cc0c0 100644 (file)
--- a/forester/java/src/org/forester/application/rio.java
+++ b/forester/java/src/org/forester/application/rio.java
@@ -23,7 +23,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.application;
 

diff --git a/forester/java/src/org/forester/application/strip.java b/forester/java/src/org/forester/application/strip.java
index f374154..14aa69e 100644 (file)
--- a/forester/java/src/org/forester/application/strip.java
+++ b/forester/java/src/org/forester/application/strip.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.application;
 

diff --git a/forester/java/src/org/forester/application/support_statistics.java b/forester/java/src/org/forester/application/support_statistics.java
index a6b6c03..ae8083a 100644 (file)
--- a/forester/java/src/org/forester/application/support_statistics.java
+++ b/forester/java/src/org/forester/application/support_statistics.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.application;
 

diff --git a/forester/java/src/org/forester/application/support_transfer.java b/forester/java/src/org/forester/application/support_transfer.java
index 3f1af34..59090c2 100644 (file)
--- a/forester/java/src/org/forester/application/support_transfer.java
+++ b/forester/java/src/org/forester/application/support_transfer.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.application;
 

diff --git a/forester/java/src/org/forester/application/surfacing.java b/forester/java/src/org/forester/application/surfacing.java
index 2218f40..5bc8173 100644 (file)
--- a/forester/java/src/org/forester/application/surfacing.java
+++ b/forester/java/src/org/forester/application/surfacing.java
@@ -22,7 +22,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.application;
 

diff --git a/forester/java/src/org/forester/archaeopteryx/AptxUtil.java b/forester/java/src/org/forester/archaeopteryx/AptxUtil.java
index 97e8304..c2dfc54 100644 (file)
--- a/forester/java/src/org/forester/archaeopteryx/AptxUtil.java
+++ b/forester/java/src/org/forester/archaeopteryx/AptxUtil.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.archaeopteryx;
 

diff --git a/forester/java/src/org/forester/archaeopteryx/Archaeopteryx.java b/forester/java/src/org/forester/archaeopteryx/Archaeopteryx.java
index 88c9588..546a8c0 100644 (file)
--- a/forester/java/src/org/forester/archaeopteryx/Archaeopteryx.java
+++ b/forester/java/src/org/forester/archaeopteryx/Archaeopteryx.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.archaeopteryx;
 

diff --git a/forester/java/src/org/forester/archaeopteryx/ArchaeopteryxA.java b/forester/java/src/org/forester/archaeopteryx/ArchaeopteryxA.java
index 837a24b..b209dbc 100644 (file)
--- a/forester/java/src/org/forester/archaeopteryx/ArchaeopteryxA.java
+++ b/forester/java/src/org/forester/archaeopteryx/ArchaeopteryxA.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.archaeopteryx;
 

diff --git a/forester/java/src/org/forester/archaeopteryx/ColorSchemeChooser.java b/forester/java/src/org/forester/archaeopteryx/ColorSchemeChooser.java
index 2866b14..59ec4b2 100644 (file)
--- a/forester/java/src/org/forester/archaeopteryx/ColorSchemeChooser.java
+++ b/forester/java/src/org/forester/archaeopteryx/ColorSchemeChooser.java
@@ -24,7 +24,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.archaeopteryx;
 

diff --git a/forester/java/src/org/forester/archaeopteryx/Configuration.java b/forester/java/src/org/forester/archaeopteryx/Configuration.java
index deaaec8..679ec85 100644 (file)
--- a/forester/java/src/org/forester/archaeopteryx/Configuration.java
+++ b/forester/java/src/org/forester/archaeopteryx/Configuration.java
@@ -24,7 +24,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.archaeopteryx;
 

diff --git a/forester/java/src/org/forester/archaeopteryx/Constants.java b/forester/java/src/org/forester/archaeopteryx/Constants.java
index 5558a84..4dc637d 100644 (file)
--- a/forester/java/src/org/forester/archaeopteryx/Constants.java
+++ b/forester/java/src/org/forester/archaeopteryx/Constants.java
@@ -24,7 +24,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.archaeopteryx;
 
@@ -49,7 +49,7 @@ public final class Constants {
             "Arial", "Helvetica", "Dialog", "Lucida Sans", "SansSerif", "Sans-serif", "Sans" };
     final static boolean        VERBOSE_DEFAULT                                               = false;
     final static int            DOMAIN_STRUCTURE_DEFAULT_WIDTH                                = 200;
-    final static String         AUTHOR_EMAIL                                                  = "phylosoft@gmail.com";
+    final static String         AUTHOR_EMAIL                                                  = "phyloxml@gmail.com";
     final static int            DOMAIN_STRUCTURE_E_VALUE_THR_DEFAULT_EXP                      = 0;
     final static float          BUTTON_ZOOM_IN_FACTOR                                         = 1.25f;
     final static float          BUTTON_ZOOM_OUT_FACTOR                                        = 1 / Constants.BUTTON_ZOOM_IN_FACTOR;
@@ -74,7 +74,7 @@ public final class Constants {
     static final int            A4_SIZE_X                                                     = 595;
     static final int            A4_SIZE_Y                                                     = 845;
     final static float          PDF_LINE_WIDTH_DEFAULT                                        = 0.5f;
-    final static String         APTX_WEB_SITE                                                 = "http://www.phylosoft.org/archaeopteryx/";
+    final static String         APTX_WEB_SITE                                                 = "https://sites.google.com/site/cmzmasek/home/software/archaeopteryx";
     final static String         PHYLOXML_WEB_SITE                                             = ForesterConstants.PHYLO_XML_LOCATION;
     final static String         PHYLOXML_REFERENCE_URL                                        = "http://www.biomedcentral.com/1471-2105/10/356/";
     final static String         APTX_REFERENCE_URL                                            = "http://www.biomedcentral.com/bmcbioinformatics/";

diff --git a/forester/java/src/org/forester/archaeopteryx/ControlPanel.java b/forester/java/src/org/forester/archaeopteryx/ControlPanel.java
index e25ef2c..12bdf3f 100644 (file)
--- a/forester/java/src/org/forester/archaeopteryx/ControlPanel.java
+++ b/forester/java/src/org/forester/archaeopteryx/ControlPanel.java
@@ -20,7 +20,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.archaeopteryx;
 

diff --git a/forester/java/src/org/forester/archaeopteryx/FontChooser.java b/forester/java/src/org/forester/archaeopteryx/FontChooser.java
index bf900af..694a6ee 100644 (file)
--- a/forester/java/src/org/forester/archaeopteryx/FontChooser.java
+++ b/forester/java/src/org/forester/archaeopteryx/FontChooser.java
@@ -9,7 +9,7 @@
 // by: James Bardsley (torasin@torasin.com)
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.archaeopteryx;
 

diff --git a/forester/java/src/org/forester/archaeopteryx/MainFrame.java b/forester/java/src/org/forester/archaeopteryx/MainFrame.java
index 72f2e27..c3da73b 100644 (file)
--- a/forester/java/src/org/forester/archaeopteryx/MainFrame.java
+++ b/forester/java/src/org/forester/archaeopteryx/MainFrame.java
@@ -20,7 +20,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.archaeopteryx;
 

diff --git a/forester/java/src/org/forester/archaeopteryx/MainFrameApplet.java b/forester/java/src/org/forester/archaeopteryx/MainFrameApplet.java
index fc8a103..2bf378a 100644 (file)
--- a/forester/java/src/org/forester/archaeopteryx/MainFrameApplet.java
+++ b/forester/java/src/org/forester/archaeopteryx/MainFrameApplet.java
@@ -24,7 +24,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.archaeopteryx;
 

diff --git a/forester/java/src/org/forester/archaeopteryx/MainFrameApplication.java b/forester/java/src/org/forester/archaeopteryx/MainFrameApplication.java
index d3b700d..ca14a87 100644 (file)
--- a/forester/java/src/org/forester/archaeopteryx/MainFrameApplication.java
+++ b/forester/java/src/org/forester/archaeopteryx/MainFrameApplication.java
@@ -22,7 +22,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.archaeopteryx;
 

diff --git a/forester/java/src/org/forester/archaeopteryx/MainPanel.java b/forester/java/src/org/forester/archaeopteryx/MainPanel.java
index 62b7d00..885e378 100644 (file)
--- a/forester/java/src/org/forester/archaeopteryx/MainPanel.java
+++ b/forester/java/src/org/forester/archaeopteryx/MainPanel.java
@@ -24,7 +24,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.archaeopteryx;
 

diff --git a/forester/java/src/org/forester/archaeopteryx/MainPanelApplets.java b/forester/java/src/org/forester/archaeopteryx/MainPanelApplets.java
index 4d4d684..80a96c0 100644 (file)
--- a/forester/java/src/org/forester/archaeopteryx/MainPanelApplets.java
+++ b/forester/java/src/org/forester/archaeopteryx/MainPanelApplets.java
@@ -24,7 +24,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.archaeopteryx;
 

diff --git a/forester/java/src/org/forester/archaeopteryx/MouseListener.java b/forester/java/src/org/forester/archaeopteryx/MouseListener.java
index eb6e64f..8239a48 100644 (file)
--- a/forester/java/src/org/forester/archaeopteryx/MouseListener.java
+++ b/forester/java/src/org/forester/archaeopteryx/MouseListener.java
@@ -24,7 +24,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.archaeopteryx;
 

diff --git a/forester/java/src/org/forester/archaeopteryx/NodeEditPanel.java b/forester/java/src/org/forester/archaeopteryx/NodeEditPanel.java
index 2392620..1892411 100644 (file)
--- a/forester/java/src/org/forester/archaeopteryx/NodeEditPanel.java
+++ b/forester/java/src/org/forester/archaeopteryx/NodeEditPanel.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.archaeopteryx;
 

diff --git a/forester/java/src/org/forester/archaeopteryx/NodeFrame.java b/forester/java/src/org/forester/archaeopteryx/NodeFrame.java
index 2b37494..e929451 100644 (file)
--- a/forester/java/src/org/forester/archaeopteryx/NodeFrame.java
+++ b/forester/java/src/org/forester/archaeopteryx/NodeFrame.java
@@ -24,7 +24,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.archaeopteryx;
 

diff --git a/forester/java/src/org/forester/archaeopteryx/NodePanel.java b/forester/java/src/org/forester/archaeopteryx/NodePanel.java
index 00a09d7..686b348 100644 (file)
--- a/forester/java/src/org/forester/archaeopteryx/NodePanel.java
+++ b/forester/java/src/org/forester/archaeopteryx/NodePanel.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.archaeopteryx;
 

diff --git a/forester/java/src/org/forester/archaeopteryx/Options.java b/forester/java/src/org/forester/archaeopteryx/Options.java
index cb067ab..43b8fec 100644 (file)
--- a/forester/java/src/org/forester/archaeopteryx/Options.java
+++ b/forester/java/src/org/forester/archaeopteryx/Options.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.archaeopteryx;
 

diff --git a/forester/java/src/org/forester/archaeopteryx/PdfExporter.java b/forester/java/src/org/forester/archaeopteryx/PdfExporter.java
index b1c7feb..6305a85 100644 (file)
--- a/forester/java/src/org/forester/archaeopteryx/PdfExporter.java
+++ b/forester/java/src/org/forester/archaeopteryx/PdfExporter.java
@@ -24,7 +24,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.archaeopteryx;
 

diff --git a/forester/java/src/org/forester/archaeopteryx/Printer.java b/forester/java/src/org/forester/archaeopteryx/Printer.java
index bca603e..ff00be5 100644 (file)
--- a/forester/java/src/org/forester/archaeopteryx/Printer.java
+++ b/forester/java/src/org/forester/archaeopteryx/Printer.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.archaeopteryx;
 

diff --git a/forester/java/src/org/forester/archaeopteryx/TextFrame.java b/forester/java/src/org/forester/archaeopteryx/TextFrame.java
index 55c12d4..11954fa 100644 (file)
--- a/forester/java/src/org/forester/archaeopteryx/TextFrame.java
+++ b/forester/java/src/org/forester/archaeopteryx/TextFrame.java
@@ -24,7 +24,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.archaeopteryx;
 

diff --git a/forester/java/src/org/forester/archaeopteryx/TreeColorSet.java b/forester/java/src/org/forester/archaeopteryx/TreeColorSet.java
index 9881efa..7e11577 100644 (file)
--- a/forester/java/src/org/forester/archaeopteryx/TreeColorSet.java
+++ b/forester/java/src/org/forester/archaeopteryx/TreeColorSet.java
@@ -22,7 +22,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.archaeopteryx;
 

diff --git a/forester/java/src/org/forester/archaeopteryx/TreeFontSet.java b/forester/java/src/org/forester/archaeopteryx/TreeFontSet.java
index 29ae89c..80c7bd2 100644 (file)
--- a/forester/java/src/org/forester/archaeopteryx/TreeFontSet.java
+++ b/forester/java/src/org/forester/archaeopteryx/TreeFontSet.java
@@ -24,7 +24,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.archaeopteryx;
 

diff --git a/forester/java/src/org/forester/archaeopteryx/TreePanel.java b/forester/java/src/org/forester/archaeopteryx/TreePanel.java
index 8bc57e2..6b26c29 100644 (file)
--- a/forester/java/src/org/forester/archaeopteryx/TreePanel.java
+++ b/forester/java/src/org/forester/archaeopteryx/TreePanel.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.archaeopteryx;
 

diff --git a/forester/java/src/org/forester/archaeopteryx/UrlTreeReader.java b/forester/java/src/org/forester/archaeopteryx/UrlTreeReader.java
index 432c2ac..ea4bca0 100644 (file)
--- a/forester/java/src/org/forester/archaeopteryx/UrlTreeReader.java
+++ b/forester/java/src/org/forester/archaeopteryx/UrlTreeReader.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.archaeopteryx;
 

diff --git a/forester/java/src/org/forester/archaeopteryx/WebLink.java b/forester/java/src/org/forester/archaeopteryx/WebLink.java
index 4db567e..3cab22b 100644 (file)
--- a/forester/java/src/org/forester/archaeopteryx/WebLink.java
+++ b/forester/java/src/org/forester/archaeopteryx/WebLink.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.archaeopteryx;
 

diff --git a/forester/java/src/org/forester/archaeopteryx/phylogeny/data/RenderableDomainArchitecture.java b/forester/java/src/org/forester/archaeopteryx/phylogeny/data/RenderableDomainArchitecture.java
index ca0d111..066aebf 100644 (file)
--- a/forester/java/src/org/forester/archaeopteryx/phylogeny/data/RenderableDomainArchitecture.java
+++ b/forester/java/src/org/forester/archaeopteryx/phylogeny/data/RenderableDomainArchitecture.java
@@ -22,7 +22,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.archaeopteryx.phylogeny.data;
 

diff --git a/forester/java/src/org/forester/archaeopteryx/phylogeny/data/RenderablePhylogenyData.java b/forester/java/src/org/forester/archaeopteryx/phylogeny/data/RenderablePhylogenyData.java
index b4f3868..9536554 100644 (file)
--- a/forester/java/src/org/forester/archaeopteryx/phylogeny/data/RenderablePhylogenyData.java
+++ b/forester/java/src/org/forester/archaeopteryx/phylogeny/data/RenderablePhylogenyData.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.archaeopteryx.phylogeny.data;
 

diff --git a/forester/java/src/org/forester/archaeopteryx/phylogeny/data/RenderableVector.java b/forester/java/src/org/forester/archaeopteryx/phylogeny/data/RenderableVector.java
index eb99a35..df16b75 100644 (file)
--- a/forester/java/src/org/forester/archaeopteryx/phylogeny/data/RenderableVector.java
+++ b/forester/java/src/org/forester/archaeopteryx/phylogeny/data/RenderableVector.java
@@ -22,7 +22,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.archaeopteryx.phylogeny.data;
 

diff --git a/forester/java/src/org/forester/archaeopteryx/tools/AncestralTaxonomyInferrer.java b/forester/java/src/org/forester/archaeopteryx/tools/AncestralTaxonomyInferrer.java
index 55a740d..25ed68a 100644 (file)
--- a/forester/java/src/org/forester/archaeopteryx/tools/AncestralTaxonomyInferrer.java
+++ b/forester/java/src/org/forester/archaeopteryx/tools/AncestralTaxonomyInferrer.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.archaeopteryx.tools;
 

diff --git a/forester/java/src/org/forester/archaeopteryx/tools/Blast.java b/forester/java/src/org/forester/archaeopteryx/tools/Blast.java
index dc99878..839a328 100644 (file)
--- a/forester/java/src/org/forester/archaeopteryx/tools/Blast.java
+++ b/forester/java/src/org/forester/archaeopteryx/tools/Blast.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.archaeopteryx.tools;
 

diff --git a/forester/java/src/org/forester/archaeopteryx/tools/GoAnnotation.java b/forester/java/src/org/forester/archaeopteryx/tools/GoAnnotation.java
index 17d417f..702f30c 100644 (file)
--- a/forester/java/src/org/forester/archaeopteryx/tools/GoAnnotation.java
+++ b/forester/java/src/org/forester/archaeopteryx/tools/GoAnnotation.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.archaeopteryx.tools;
 

diff --git a/forester/java/src/org/forester/archaeopteryx/tools/ImageLoader.java b/forester/java/src/org/forester/archaeopteryx/tools/ImageLoader.java
index b81cc25..7b51d56 100644 (file)
--- a/forester/java/src/org/forester/archaeopteryx/tools/ImageLoader.java
+++ b/forester/java/src/org/forester/archaeopteryx/tools/ImageLoader.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.archaeopteryx.tools;
 

diff --git a/forester/java/src/org/forester/archaeopteryx/tools/PhyloInferenceDialog.java b/forester/java/src/org/forester/archaeopteryx/tools/PhyloInferenceDialog.java
index 32e21c8..d750a43 100644 (file)
--- a/forester/java/src/org/forester/archaeopteryx/tools/PhyloInferenceDialog.java
+++ b/forester/java/src/org/forester/archaeopteryx/tools/PhyloInferenceDialog.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.archaeopteryx.tools;
 

diff --git a/forester/java/src/org/forester/archaeopteryx/tools/PhylogeneticInferenceOptions.java b/forester/java/src/org/forester/archaeopteryx/tools/PhylogeneticInferenceOptions.java
index b1ea597..f66cc25 100644 (file)
--- a/forester/java/src/org/forester/archaeopteryx/tools/PhylogeneticInferenceOptions.java
+++ b/forester/java/src/org/forester/archaeopteryx/tools/PhylogeneticInferenceOptions.java
@@ -22,7 +22,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.archaeopteryx.tools;
 

diff --git a/forester/java/src/org/forester/archaeopteryx/tools/PhylogeneticInferrer.java b/forester/java/src/org/forester/archaeopteryx/tools/PhylogeneticInferrer.java
index f0ed725..10bc95e 100644 (file)
--- a/forester/java/src/org/forester/archaeopteryx/tools/PhylogeneticInferrer.java
+++ b/forester/java/src/org/forester/archaeopteryx/tools/PhylogeneticInferrer.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.archaeopteryx.tools;
 

diff --git a/forester/java/src/org/forester/archaeopteryx/tools/ProcessPool.java b/forester/java/src/org/forester/archaeopteryx/tools/ProcessPool.java
index 60c531f..c9426d5 100644 (file)
--- a/forester/java/src/org/forester/archaeopteryx/tools/ProcessPool.java
+++ b/forester/java/src/org/forester/archaeopteryx/tools/ProcessPool.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA\r
 //\r
 // Contact: phylosoft @ gmail . com\r
-// WWW: www.phylosoft.org/forester\r
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester\r
 \r
 package org.forester.archaeopteryx.tools;\r
 \r

diff --git a/forester/java/src/org/forester/archaeopteryx/tools/ProcessRunning.java b/forester/java/src/org/forester/archaeopteryx/tools/ProcessRunning.java
index 2ca5f05..be2a9ec 100644 (file)
--- a/forester/java/src/org/forester/archaeopteryx/tools/ProcessRunning.java
+++ b/forester/java/src/org/forester/archaeopteryx/tools/ProcessRunning.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA\r
 //\r
 // Contact: phylosoft @ gmail . com\r
-// WWW: www.phylosoft.org/forester\r
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester\r
 \r
 package org.forester.archaeopteryx.tools;\r
 \r

diff --git a/forester/java/src/org/forester/archaeopteryx/tools/SequenceDataRetriver.java b/forester/java/src/org/forester/archaeopteryx/tools/SequenceDataRetriver.java
index 454f139..6b9b88b 100644 (file)
--- a/forester/java/src/org/forester/archaeopteryx/tools/SequenceDataRetriver.java
+++ b/forester/java/src/org/forester/archaeopteryx/tools/SequenceDataRetriver.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.archaeopteryx.tools;
 

diff --git a/forester/java/src/org/forester/archaeopteryx/webservices/PhylogeniesWebserviceClient.java b/forester/java/src/org/forester/archaeopteryx/webservices/PhylogeniesWebserviceClient.java
index 0d8b09c..232a215 100644 (file)
--- a/forester/java/src/org/forester/archaeopteryx/webservices/PhylogeniesWebserviceClient.java
+++ b/forester/java/src/org/forester/archaeopteryx/webservices/PhylogeniesWebserviceClient.java
@@ -20,7 +20,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.archaeopteryx.webservices;
 

diff --git a/forester/java/src/org/forester/archaeopteryx/webservices/WebserviceUtil.java b/forester/java/src/org/forester/archaeopteryx/webservices/WebserviceUtil.java
index 86ff0d6..d619022 100644 (file)
--- a/forester/java/src/org/forester/archaeopteryx/webservices/WebserviceUtil.java
+++ b/forester/java/src/org/forester/archaeopteryx/webservices/WebserviceUtil.java
@@ -20,7 +20,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.archaeopteryx.webservices;
 

diff --git a/forester/java/src/org/forester/datastructures/Queue.java b/forester/java/src/org/forester/datastructures/Queue.java
index c0c9c21..03e0f94 100644 (file)
--- a/forester/java/src/org/forester/datastructures/Queue.java
+++ b/forester/java/src/org/forester/datastructures/Queue.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.datastructures;
 

diff --git a/forester/java/src/org/forester/development/AbstractRenderer.java b/forester/java/src/org/forester/development/AbstractRenderer.java
index 645735b..d3fe715 100644 (file)
--- a/forester/java/src/org/forester/development/AbstractRenderer.java
+++ b/forester/java/src/org/forester/development/AbstractRenderer.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.development;
 

diff --git a/forester/java/src/org/forester/development/DevelopmentTools.java b/forester/java/src/org/forester/development/DevelopmentTools.java
index 5a6a8db..3cbc385 100644 (file)
--- a/forester/java/src/org/forester/development/DevelopmentTools.java
+++ b/forester/java/src/org/forester/development/DevelopmentTools.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.development;
 

diff --git a/forester/java/src/org/forester/development/HmmerRest.java b/forester/java/src/org/forester/development/HmmerRest.java
index b77aa23..f5ccf8e 100644 (file)
--- a/forester/java/src/org/forester/development/HmmerRest.java
+++ b/forester/java/src/org/forester/development/HmmerRest.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.development;
 

diff --git a/forester/java/src/org/forester/development/MsaRenderer.java b/forester/java/src/org/forester/development/MsaRenderer.java
index 3f7b5a3..ee82c70 100644 (file)
--- a/forester/java/src/org/forester/development/MsaRenderer.java
+++ b/forester/java/src/org/forester/development/MsaRenderer.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.development;
 

diff --git a/forester/java/src/org/forester/development/ResidueRenderer.java b/forester/java/src/org/forester/development/ResidueRenderer.java
index 1e5122a..90f4dae 100644 (file)
--- a/forester/java/src/org/forester/development/ResidueRenderer.java
+++ b/forester/java/src/org/forester/development/ResidueRenderer.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.development;
 

diff --git a/forester/java/src/org/forester/development/Test.java b/forester/java/src/org/forester/development/Test.java
index a88d8f2..d929aa3 100644 (file)
--- a/forester/java/src/org/forester/development/Test.java
+++ b/forester/java/src/org/forester/development/Test.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.development;
 

diff --git a/forester/java/src/org/forester/development/Time.java b/forester/java/src/org/forester/development/Time.java
index 9d9e8dc..11454f6 100644 (file)
--- a/forester/java/src/org/forester/development/Time.java
+++ b/forester/java/src/org/forester/development/Time.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.development;
 

diff --git a/forester/java/src/org/forester/evoinference/TestPhylogenyReconstruction.java b/forester/java/src/org/forester/evoinference/TestPhylogenyReconstruction.java
index 9ff8457..3529d1e 100644 (file)
--- a/forester/java/src/org/forester/evoinference/TestPhylogenyReconstruction.java
+++ b/forester/java/src/org/forester/evoinference/TestPhylogenyReconstruction.java
@@ -23,7 +23,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.evoinference;
 

diff --git a/forester/java/src/org/forester/evoinference/distance/NeighborJoining.java b/forester/java/src/org/forester/evoinference/distance/NeighborJoining.java
index 1f74a2b..c624bff 100644 (file)
--- a/forester/java/src/org/forester/evoinference/distance/NeighborJoining.java
+++ b/forester/java/src/org/forester/evoinference/distance/NeighborJoining.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.evoinference.distance;
 

diff --git a/forester/java/src/org/forester/evoinference/distance/PairwiseDistanceCalculator.java b/forester/java/src/org/forester/evoinference/distance/PairwiseDistanceCalculator.java
index f2b99a1..0dc6c6e 100644 (file)
--- a/forester/java/src/org/forester/evoinference/distance/PairwiseDistanceCalculator.java
+++ b/forester/java/src/org/forester/evoinference/distance/PairwiseDistanceCalculator.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.evoinference.distance;
 

diff --git a/forester/java/src/org/forester/evoinference/matrix/character/BasicCharacterStateMatrix.java b/forester/java/src/org/forester/evoinference/matrix/character/BasicCharacterStateMatrix.java
index 2d5e7c7..4bf6a26 100644 (file)
--- a/forester/java/src/org/forester/evoinference/matrix/character/BasicCharacterStateMatrix.java
+++ b/forester/java/src/org/forester/evoinference/matrix/character/BasicCharacterStateMatrix.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.evoinference.matrix.character;
 

diff --git a/forester/java/src/org/forester/evoinference/matrix/character/CharacterStateMatrix.java b/forester/java/src/org/forester/evoinference/matrix/character/CharacterStateMatrix.java
index 905552c..8d0af11 100644 (file)
--- a/forester/java/src/org/forester/evoinference/matrix/character/CharacterStateMatrix.java
+++ b/forester/java/src/org/forester/evoinference/matrix/character/CharacterStateMatrix.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.evoinference.matrix.character;
 

diff --git a/forester/java/src/org/forester/evoinference/matrix/character/DiscreteState.java b/forester/java/src/org/forester/evoinference/matrix/character/DiscreteState.java
index a05e93d..7f80ceb 100644 (file)
--- a/forester/java/src/org/forester/evoinference/matrix/character/DiscreteState.java
+++ b/forester/java/src/org/forester/evoinference/matrix/character/DiscreteState.java
@@ -22,7 +22,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.evoinference.matrix.character;
 

diff --git a/forester/java/src/org/forester/evoinference/matrix/distance/BasicSymmetricalDistanceMatrix.java b/forester/java/src/org/forester/evoinference/matrix/distance/BasicSymmetricalDistanceMatrix.java
index d45ecda..616a91c 100644 (file)
--- a/forester/java/src/org/forester/evoinference/matrix/distance/BasicSymmetricalDistanceMatrix.java
+++ b/forester/java/src/org/forester/evoinference/matrix/distance/BasicSymmetricalDistanceMatrix.java
@@ -22,7 +22,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.evoinference.matrix.distance;
 

diff --git a/forester/java/src/org/forester/evoinference/matrix/distance/DistanceMatrix.java b/forester/java/src/org/forester/evoinference/matrix/distance/DistanceMatrix.java
index 1a42fd3..2eeaca9 100644 (file)
--- a/forester/java/src/org/forester/evoinference/matrix/distance/DistanceMatrix.java
+++ b/forester/java/src/org/forester/evoinference/matrix/distance/DistanceMatrix.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.evoinference.matrix.distance;
 

diff --git a/forester/java/src/org/forester/evoinference/parsimony/DolloParsimony.java b/forester/java/src/org/forester/evoinference/parsimony/DolloParsimony.java
index 65c072c..57df9c7 100644 (file)
--- a/forester/java/src/org/forester/evoinference/parsimony/DolloParsimony.java
+++ b/forester/java/src/org/forester/evoinference/parsimony/DolloParsimony.java
@@ -22,7 +22,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.evoinference.parsimony;
 

diff --git a/forester/java/src/org/forester/evoinference/parsimony/FitchParsimony.java b/forester/java/src/org/forester/evoinference/parsimony/FitchParsimony.java
index 9d9a602..fd51681 100644 (file)
--- a/forester/java/src/org/forester/evoinference/parsimony/FitchParsimony.java
+++ b/forester/java/src/org/forester/evoinference/parsimony/FitchParsimony.java
@@ -22,7 +22,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.evoinference.parsimony;
 

diff --git a/forester/java/src/org/forester/evoinference/tools/BootstrapResampler.java b/forester/java/src/org/forester/evoinference/tools/BootstrapResampler.java
index 7837762..56fbc7c 100644 (file)
--- a/forester/java/src/org/forester/evoinference/tools/BootstrapResampler.java
+++ b/forester/java/src/org/forester/evoinference/tools/BootstrapResampler.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.evoinference.tools;
 

diff --git a/forester/java/src/org/forester/go/BasicGoRelationship.java b/forester/java/src/org/forester/go/BasicGoRelationship.java
index 247e859..3a41d6d 100644 (file)
--- a/forester/java/src/org/forester/go/BasicGoRelationship.java
+++ b/forester/java/src/org/forester/go/BasicGoRelationship.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.go;
 

diff --git a/forester/java/src/org/forester/go/BasicGoSubset.java b/forester/java/src/org/forester/go/BasicGoSubset.java
index 82015fb..f1658d7 100644 (file)
--- a/forester/java/src/org/forester/go/BasicGoSubset.java
+++ b/forester/java/src/org/forester/go/BasicGoSubset.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.go;
 

diff --git a/forester/java/src/org/forester/go/BasicGoTerm.java b/forester/java/src/org/forester/go/BasicGoTerm.java
index 4401afe..f438d2f 100644 (file)
--- a/forester/java/src/org/forester/go/BasicGoTerm.java
+++ b/forester/java/src/org/forester/go/BasicGoTerm.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.go;
 

diff --git a/forester/java/src/org/forester/go/BasicGoXRef.java b/forester/java/src/org/forester/go/BasicGoXRef.java
index b877bb4..c523102 100644 (file)
--- a/forester/java/src/org/forester/go/BasicGoXRef.java
+++ b/forester/java/src/org/forester/go/BasicGoXRef.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.go;
 

diff --git a/forester/java/src/org/forester/go/GoId.java b/forester/java/src/org/forester/go/GoId.java
index cc02247..5f98e37 100644 (file)
--- a/forester/java/src/org/forester/go/GoId.java
+++ b/forester/java/src/org/forester/go/GoId.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.go;
 

diff --git a/forester/java/src/org/forester/go/GoNameSpace.java b/forester/java/src/org/forester/go/GoNameSpace.java
index c9dc103..2d943c1 100644 (file)
--- a/forester/java/src/org/forester/go/GoNameSpace.java
+++ b/forester/java/src/org/forester/go/GoNameSpace.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.go;
 

diff --git a/forester/java/src/org/forester/go/GoRelationship.java b/forester/java/src/org/forester/go/GoRelationship.java
index 47ef4e2..6ca8d7d 100644 (file)
--- a/forester/java/src/org/forester/go/GoRelationship.java
+++ b/forester/java/src/org/forester/go/GoRelationship.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.go;
 

diff --git a/forester/java/src/org/forester/go/GoSubset.java b/forester/java/src/org/forester/go/GoSubset.java
index 1ee494c..02a2f03 100644 (file)
--- a/forester/java/src/org/forester/go/GoSubset.java
+++ b/forester/java/src/org/forester/go/GoSubset.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.go;
 

diff --git a/forester/java/src/org/forester/go/GoTerm.java b/forester/java/src/org/forester/go/GoTerm.java
index 600cb41..71a75cf 100644 (file)
--- a/forester/java/src/org/forester/go/GoTerm.java
+++ b/forester/java/src/org/forester/go/GoTerm.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.go;
 

diff --git a/forester/java/src/org/forester/go/GoUtils.java b/forester/java/src/org/forester/go/GoUtils.java
index 39a778f..adec9fb 100644 (file)
--- a/forester/java/src/org/forester/go/GoUtils.java
+++ b/forester/java/src/org/forester/go/GoUtils.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.go;
 

diff --git a/forester/java/src/org/forester/go/GoXRef.java b/forester/java/src/org/forester/go/GoXRef.java
index 7f0a5e5..e0a4ca8 100644 (file)
--- a/forester/java/src/org/forester/go/GoXRef.java
+++ b/forester/java/src/org/forester/go/GoXRef.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.go;
 

diff --git a/forester/java/src/org/forester/go/Mapping.java b/forester/java/src/org/forester/go/Mapping.java
index 440094f..5e9377a 100644 (file)
--- a/forester/java/src/org/forester/go/Mapping.java
+++ b/forester/java/src/org/forester/go/Mapping.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.go;
 

diff --git a/forester/java/src/org/forester/go/OBOparser.java b/forester/java/src/org/forester/go/OBOparser.java
index b47a60b..d2486db 100644 (file)
--- a/forester/java/src/org/forester/go/OBOparser.java
+++ b/forester/java/src/org/forester/go/OBOparser.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.go;
 

diff --git a/forester/java/src/org/forester/go/PfamToGoMapping.java b/forester/java/src/org/forester/go/PfamToGoMapping.java
index 27ea75d..e11fde1 100644 (file)
--- a/forester/java/src/org/forester/go/PfamToGoMapping.java
+++ b/forester/java/src/org/forester/go/PfamToGoMapping.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.go;
 

diff --git a/forester/java/src/org/forester/go/TestGo.java b/forester/java/src/org/forester/go/TestGo.java
index 8607c35..f8197ee 100644 (file)
--- a/forester/java/src/org/forester/go/TestGo.java
+++ b/forester/java/src/org/forester/go/TestGo.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.go;
 

diff --git a/forester/java/src/org/forester/go/etc/MetaOntologizer.java b/forester/java/src/org/forester/go/etc/MetaOntologizer.java
index c77f9e5..11afb54 100644 (file)
--- a/forester/java/src/org/forester/go/etc/MetaOntologizer.java
+++ b/forester/java/src/org/forester/go/etc/MetaOntologizer.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.go.etc;
 

diff --git a/forester/java/src/org/forester/io/parsers/FastaParser.java b/forester/java/src/org/forester/io/parsers/FastaParser.java
index 6a652f5..348bec4 100644 (file)
--- a/forester/java/src/org/forester/io/parsers/FastaParser.java
+++ b/forester/java/src/org/forester/io/parsers/FastaParser.java
@@ -22,7 +22,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.io.parsers;
 

diff --git a/forester/java/src/org/forester/io/parsers/GeneralMsaParser.java b/forester/java/src/org/forester/io/parsers/GeneralMsaParser.java
index bf6577c..507ae1f 100644 (file)
--- a/forester/java/src/org/forester/io/parsers/GeneralMsaParser.java
+++ b/forester/java/src/org/forester/io/parsers/GeneralMsaParser.java
@@ -22,7 +22,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.io.parsers;
 

diff --git a/forester/java/src/org/forester/io/parsers/HmmPfamOutputParser.java b/forester/java/src/org/forester/io/parsers/HmmPfamOutputParser.java
index 4c9914e..090a052 100644 (file)
--- a/forester/java/src/org/forester/io/parsers/HmmPfamOutputParser.java
+++ b/forester/java/src/org/forester/io/parsers/HmmPfamOutputParser.java
@@ -22,7 +22,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.io.parsers;
 

diff --git a/forester/java/src/org/forester/io/parsers/HmmscanPerDomainTableParser.java b/forester/java/src/org/forester/io/parsers/HmmscanPerDomainTableParser.java
index b5d1bc1..ada802a 100644 (file)
--- a/forester/java/src/org/forester/io/parsers/HmmscanPerDomainTableParser.java
+++ b/forester/java/src/org/forester/io/parsers/HmmscanPerDomainTableParser.java
@@ -23,7 +23,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.io.parsers;
 

diff --git a/forester/java/src/org/forester/io/parsers/PhylogenyParser.java b/forester/java/src/org/forester/io/parsers/PhylogenyParser.java
index d4bbdb4..b0fe08a 100644 (file)
--- a/forester/java/src/org/forester/io/parsers/PhylogenyParser.java
+++ b/forester/java/src/org/forester/io/parsers/PhylogenyParser.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.io.parsers;
 

diff --git a/forester/java/src/org/forester/io/parsers/SymmetricalDistanceMatrixParser.java b/forester/java/src/org/forester/io/parsers/SymmetricalDistanceMatrixParser.java
index 03f66df..78b9fcd 100644 (file)
--- a/forester/java/src/org/forester/io/parsers/SymmetricalDistanceMatrixParser.java
+++ b/forester/java/src/org/forester/io/parsers/SymmetricalDistanceMatrixParser.java
@@ -22,7 +22,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.io.parsers;
 

diff --git a/forester/java/src/org/forester/io/parsers/nexus/NexusBinaryStatesMatrixParser.java b/forester/java/src/org/forester/io/parsers/nexus/NexusBinaryStatesMatrixParser.java
index a9d9d3d..721bcc6 100644 (file)
--- a/forester/java/src/org/forester/io/parsers/nexus/NexusBinaryStatesMatrixParser.java
+++ b/forester/java/src/org/forester/io/parsers/nexus/NexusBinaryStatesMatrixParser.java
@@ -23,7 +23,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester/
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester/
 
 package org.forester.io.parsers.nexus;
 

diff --git a/forester/java/src/org/forester/io/parsers/nexus/NexusConstants.java b/forester/java/src/org/forester/io/parsers/nexus/NexusConstants.java
index 4c4f67b..250cfb4 100644 (file)
--- a/forester/java/src/org/forester/io/parsers/nexus/NexusConstants.java
+++ b/forester/java/src/org/forester/io/parsers/nexus/NexusConstants.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.io.parsers.nexus;
 

diff --git a/forester/java/src/org/forester/io/parsers/nexus/NexusFormatException.java b/forester/java/src/org/forester/io/parsers/nexus/NexusFormatException.java
index cbc15db..dcf9c37 100644 (file)
--- a/forester/java/src/org/forester/io/parsers/nexus/NexusFormatException.java
+++ b/forester/java/src/org/forester/io/parsers/nexus/NexusFormatException.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.io.parsers.nexus;
 

diff --git a/forester/java/src/org/forester/io/parsers/nexus/NexusPhylogeniesParser.java b/forester/java/src/org/forester/io/parsers/nexus/NexusPhylogeniesParser.java
index 8b6e638..0f9a5b6 100644 (file)
--- a/forester/java/src/org/forester/io/parsers/nexus/NexusPhylogeniesParser.java
+++ b/forester/java/src/org/forester/io/parsers/nexus/NexusPhylogeniesParser.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.io.parsers.nexus;
 

diff --git a/forester/java/src/org/forester/io/parsers/nhx/NHXFormatException.java b/forester/java/src/org/forester/io/parsers/nhx/NHXFormatException.java
index 24a11b1..2091965 100644 (file)
--- a/forester/java/src/org/forester/io/parsers/nhx/NHXFormatException.java
+++ b/forester/java/src/org/forester/io/parsers/nhx/NHXFormatException.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.io.parsers.nhx;
 

diff --git a/forester/java/src/org/forester/io/parsers/nhx/NHXParser.java b/forester/java/src/org/forester/io/parsers/nhx/NHXParser.java
index 5971bfc..1463d84 100644 (file)
--- a/forester/java/src/org/forester/io/parsers/nhx/NHXParser.java
+++ b/forester/java/src/org/forester/io/parsers/nhx/NHXParser.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.io.parsers.nhx;
 

diff --git a/forester/java/src/org/forester/io/parsers/nhx/NHXtags.java b/forester/java/src/org/forester/io/parsers/nhx/NHXtags.java
index 3a524bb..00cba9d 100644 (file)
--- a/forester/java/src/org/forester/io/parsers/nhx/NHXtags.java
+++ b/forester/java/src/org/forester/io/parsers/nhx/NHXtags.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.io.parsers.nhx;
 

diff --git a/forester/java/src/org/forester/io/parsers/phyloxml/PhyloXmlDataFormatException.java b/forester/java/src/org/forester/io/parsers/phyloxml/PhyloXmlDataFormatException.java
index 5dcd5a8..7bb41d9 100644 (file)
--- a/forester/java/src/org/forester/io/parsers/phyloxml/PhyloXmlDataFormatException.java
+++ b/forester/java/src/org/forester/io/parsers/phyloxml/PhyloXmlDataFormatException.java
@@ -22,7 +22,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.io.parsers.phyloxml;
 

diff --git a/forester/java/src/org/forester/io/parsers/phyloxml/PhyloXmlException.java b/forester/java/src/org/forester/io/parsers/phyloxml/PhyloXmlException.java
index 3181688..722ea37 100644 (file)
--- a/forester/java/src/org/forester/io/parsers/phyloxml/PhyloXmlException.java
+++ b/forester/java/src/org/forester/io/parsers/phyloxml/PhyloXmlException.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.io.parsers.phyloxml;
 

diff --git a/forester/java/src/org/forester/io/parsers/phyloxml/PhyloXmlHandler.java b/forester/java/src/org/forester/io/parsers/phyloxml/PhyloXmlHandler.java
index b724a79..ec05952 100644 (file)
--- a/forester/java/src/org/forester/io/parsers/phyloxml/PhyloXmlHandler.java
+++ b/forester/java/src/org/forester/io/parsers/phyloxml/PhyloXmlHandler.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.io.parsers.phyloxml;
 

diff --git a/forester/java/src/org/forester/io/parsers/phyloxml/PhyloXmlMapping.java b/forester/java/src/org/forester/io/parsers/phyloxml/PhyloXmlMapping.java
index 4659fc2..9e72a30 100644 (file)
--- a/forester/java/src/org/forester/io/parsers/phyloxml/PhyloXmlMapping.java
+++ b/forester/java/src/org/forester/io/parsers/phyloxml/PhyloXmlMapping.java
@@ -23,7 +23,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.io.parsers.phyloxml;
 

diff --git a/forester/java/src/org/forester/io/parsers/phyloxml/PhyloXmlParser.java b/forester/java/src/org/forester/io/parsers/phyloxml/PhyloXmlParser.java
index b8de6cf..983048f 100644 (file)
--- a/forester/java/src/org/forester/io/parsers/phyloxml/PhyloXmlParser.java
+++ b/forester/java/src/org/forester/io/parsers/phyloxml/PhyloXmlParser.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.io.parsers.phyloxml;
 

diff --git a/forester/java/src/org/forester/io/parsers/phyloxml/PhyloXmlUtil.java b/forester/java/src/org/forester/io/parsers/phyloxml/PhyloXmlUtil.java
index dadaea5..f7aa962 100644 (file)
--- a/forester/java/src/org/forester/io/parsers/phyloxml/PhyloXmlUtil.java
+++ b/forester/java/src/org/forester/io/parsers/phyloxml/PhyloXmlUtil.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.io.parsers.phyloxml;
 

diff --git a/forester/java/src/org/forester/io/parsers/phyloxml/XmlElement.java b/forester/java/src/org/forester/io/parsers/phyloxml/XmlElement.java
index 27df49c..e0cc08c 100644 (file)
--- a/forester/java/src/org/forester/io/parsers/phyloxml/XmlElement.java
+++ b/forester/java/src/org/forester/io/parsers/phyloxml/XmlElement.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.io.parsers.phyloxml;
 

diff --git a/forester/java/src/org/forester/io/parsers/phyloxml/data/AnnotationParser.java b/forester/java/src/org/forester/io/parsers/phyloxml/data/AnnotationParser.java
index 88a6e8b..cab3bef 100644 (file)
--- a/forester/java/src/org/forester/io/parsers/phyloxml/data/AnnotationParser.java
+++ b/forester/java/src/org/forester/io/parsers/phyloxml/data/AnnotationParser.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.io.parsers.phyloxml.data;
 

diff --git a/forester/java/src/org/forester/io/parsers/phyloxml/data/BinaryCharactersParser.java b/forester/java/src/org/forester/io/parsers/phyloxml/data/BinaryCharactersParser.java
index 1d22594..d8692f0 100644 (file)
--- a/forester/java/src/org/forester/io/parsers/phyloxml/data/BinaryCharactersParser.java
+++ b/forester/java/src/org/forester/io/parsers/phyloxml/data/BinaryCharactersParser.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.io.parsers.phyloxml.data;
 

diff --git a/forester/java/src/org/forester/io/parsers/phyloxml/data/BranchWidthParser.java b/forester/java/src/org/forester/io/parsers/phyloxml/data/BranchWidthParser.java
index 05f08d7..6a709f6 100644 (file)
--- a/forester/java/src/org/forester/io/parsers/phyloxml/data/BranchWidthParser.java
+++ b/forester/java/src/org/forester/io/parsers/phyloxml/data/BranchWidthParser.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.io.parsers.phyloxml.data;
 

diff --git a/forester/java/src/org/forester/io/parsers/phyloxml/data/ColorParser.java b/forester/java/src/org/forester/io/parsers/phyloxml/data/ColorParser.java
index fa4a661..65e6658 100644 (file)
--- a/forester/java/src/org/forester/io/parsers/phyloxml/data/ColorParser.java
+++ b/forester/java/src/org/forester/io/parsers/phyloxml/data/ColorParser.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.io.parsers.phyloxml.data;
 

diff --git a/forester/java/src/org/forester/io/parsers/phyloxml/data/ConfidenceParser.java b/forester/java/src/org/forester/io/parsers/phyloxml/data/ConfidenceParser.java
index 72bc11d..917efe9 100644 (file)
--- a/forester/java/src/org/forester/io/parsers/phyloxml/data/ConfidenceParser.java
+++ b/forester/java/src/org/forester/io/parsers/phyloxml/data/ConfidenceParser.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.io.parsers.phyloxml.data;
 

diff --git a/forester/java/src/org/forester/io/parsers/phyloxml/data/DateParser.java b/forester/java/src/org/forester/io/parsers/phyloxml/data/DateParser.java
index 780b84d..0c4040a 100644 (file)
--- a/forester/java/src/org/forester/io/parsers/phyloxml/data/DateParser.java
+++ b/forester/java/src/org/forester/io/parsers/phyloxml/data/DateParser.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.io.parsers.phyloxml.data;
 

diff --git a/forester/java/src/org/forester/io/parsers/phyloxml/data/DistributionParser.java b/forester/java/src/org/forester/io/parsers/phyloxml/data/DistributionParser.java
index 904204d..a01f205 100644 (file)
--- a/forester/java/src/org/forester/io/parsers/phyloxml/data/DistributionParser.java
+++ b/forester/java/src/org/forester/io/parsers/phyloxml/data/DistributionParser.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.io.parsers.phyloxml.data;
 

diff --git a/forester/java/src/org/forester/io/parsers/phyloxml/data/DomainArchitectureParser.java b/forester/java/src/org/forester/io/parsers/phyloxml/data/DomainArchitectureParser.java
index e76ba6a..4010912 100644 (file)
--- a/forester/java/src/org/forester/io/parsers/phyloxml/data/DomainArchitectureParser.java
+++ b/forester/java/src/org/forester/io/parsers/phyloxml/data/DomainArchitectureParser.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.io.parsers.phyloxml.data;
 

diff --git a/forester/java/src/org/forester/io/parsers/phyloxml/data/EventParser.java b/forester/java/src/org/forester/io/parsers/phyloxml/data/EventParser.java
index 5c2ee69..99b2bd3 100644 (file)
--- a/forester/java/src/org/forester/io/parsers/phyloxml/data/EventParser.java
+++ b/forester/java/src/org/forester/io/parsers/phyloxml/data/EventParser.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.io.parsers.phyloxml.data;
 

diff --git a/forester/java/src/org/forester/io/parsers/phyloxml/data/PhylogenyDataPhyloXmlParser.java b/forester/java/src/org/forester/io/parsers/phyloxml/data/PhylogenyDataPhyloXmlParser.java
index f74220e..e12b92a 100644 (file)
--- a/forester/java/src/org/forester/io/parsers/phyloxml/data/PhylogenyDataPhyloXmlParser.java
+++ b/forester/java/src/org/forester/io/parsers/phyloxml/data/PhylogenyDataPhyloXmlParser.java
@@ -22,7 +22,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.io.parsers.phyloxml.data;
 

diff --git a/forester/java/src/org/forester/io/parsers/phyloxml/data/PointParser.java b/forester/java/src/org/forester/io/parsers/phyloxml/data/PointParser.java
index e795460..c7006ab 100644 (file)
--- a/forester/java/src/org/forester/io/parsers/phyloxml/data/PointParser.java
+++ b/forester/java/src/org/forester/io/parsers/phyloxml/data/PointParser.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.io.parsers.phyloxml.data;
 

diff --git a/forester/java/src/org/forester/io/parsers/phyloxml/data/PolygonParser.java b/forester/java/src/org/forester/io/parsers/phyloxml/data/PolygonParser.java
index 447a641..b996f09 100644 (file)
--- a/forester/java/src/org/forester/io/parsers/phyloxml/data/PolygonParser.java
+++ b/forester/java/src/org/forester/io/parsers/phyloxml/data/PolygonParser.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.io.parsers.phyloxml.data;
 

diff --git a/forester/java/src/org/forester/io/parsers/phyloxml/data/ProteinDomainParser.java b/forester/java/src/org/forester/io/parsers/phyloxml/data/ProteinDomainParser.java
index 75498cd..e6a15df 100644 (file)
--- a/forester/java/src/org/forester/io/parsers/phyloxml/data/ProteinDomainParser.java
+++ b/forester/java/src/org/forester/io/parsers/phyloxml/data/ProteinDomainParser.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.io.parsers.phyloxml.data;
 

diff --git a/forester/java/src/org/forester/io/parsers/phyloxml/data/SequenceParser.java b/forester/java/src/org/forester/io/parsers/phyloxml/data/SequenceParser.java
index 5208b9f..fa1caad 100644 (file)
--- a/forester/java/src/org/forester/io/parsers/phyloxml/data/SequenceParser.java
+++ b/forester/java/src/org/forester/io/parsers/phyloxml/data/SequenceParser.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.io.parsers.phyloxml.data;
 

diff --git a/forester/java/src/org/forester/io/parsers/phyloxml/data/SequenceRelationParser.java b/forester/java/src/org/forester/io/parsers/phyloxml/data/SequenceRelationParser.java
index 624944d..468adc9 100644 (file)
--- a/forester/java/src/org/forester/io/parsers/phyloxml/data/SequenceRelationParser.java
+++ b/forester/java/src/org/forester/io/parsers/phyloxml/data/SequenceRelationParser.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.io.parsers.phyloxml.data;
 

diff --git a/forester/java/src/org/forester/io/parsers/phyloxml/data/TaxonomyParser.java b/forester/java/src/org/forester/io/parsers/phyloxml/data/TaxonomyParser.java
index a9ffca2..f55028f 100644 (file)
--- a/forester/java/src/org/forester/io/parsers/phyloxml/data/TaxonomyParser.java
+++ b/forester/java/src/org/forester/io/parsers/phyloxml/data/TaxonomyParser.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.io.parsers.phyloxml.data;
 

diff --git a/forester/java/src/org/forester/io/parsers/phyloxml/data/UriParser.java b/forester/java/src/org/forester/io/parsers/phyloxml/data/UriParser.java
index 40f5fa3..bc032f8 100644 (file)
--- a/forester/java/src/org/forester/io/parsers/phyloxml/data/UriParser.java
+++ b/forester/java/src/org/forester/io/parsers/phyloxml/data/UriParser.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.io.parsers.phyloxml.data;
 

diff --git a/forester/java/src/org/forester/io/parsers/tol/TolParser.java b/forester/java/src/org/forester/io/parsers/tol/TolParser.java
index 24aeeba..de48b4c 100644 (file)
--- a/forester/java/src/org/forester/io/parsers/tol/TolParser.java
+++ b/forester/java/src/org/forester/io/parsers/tol/TolParser.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.io.parsers.tol;
 

diff --git a/forester/java/src/org/forester/io/parsers/tol/TolXmlHandler.java b/forester/java/src/org/forester/io/parsers/tol/TolXmlHandler.java
index 975ca0d..3575986 100644 (file)
--- a/forester/java/src/org/forester/io/parsers/tol/TolXmlHandler.java
+++ b/forester/java/src/org/forester/io/parsers/tol/TolXmlHandler.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.io.parsers.tol;
 

diff --git a/forester/java/src/org/forester/io/parsers/tol/TolXmlMapping.java b/forester/java/src/org/forester/io/parsers/tol/TolXmlMapping.java
index bb7732d..165d9c0 100644 (file)
--- a/forester/java/src/org/forester/io/parsers/tol/TolXmlMapping.java
+++ b/forester/java/src/org/forester/io/parsers/tol/TolXmlMapping.java
@@ -23,7 +23,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.io.parsers.tol;
 

diff --git a/forester/java/src/org/forester/io/parsers/util/PhylogenyParserException.java b/forester/java/src/org/forester/io/parsers/util/PhylogenyParserException.java
index c94a60f..d4dc9b7 100644 (file)
--- a/forester/java/src/org/forester/io/parsers/util/PhylogenyParserException.java
+++ b/forester/java/src/org/forester/io/parsers/util/PhylogenyParserException.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.io.parsers.util;
 

diff --git a/forester/java/src/org/forester/io/writers/PhyloXmlNodeWriter.java b/forester/java/src/org/forester/io/writers/PhyloXmlNodeWriter.java
index 67d38d4..f072c58 100644 (file)
--- a/forester/java/src/org/forester/io/writers/PhyloXmlNodeWriter.java
+++ b/forester/java/src/org/forester/io/writers/PhyloXmlNodeWriter.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.io.writers;
 

diff --git a/forester/java/src/org/forester/io/writers/PhylogenyWriter.java b/forester/java/src/org/forester/io/writers/PhylogenyWriter.java
index 7e03ef3..454ca74 100644 (file)
--- a/forester/java/src/org/forester/io/writers/PhylogenyWriter.java
+++ b/forester/java/src/org/forester/io/writers/PhylogenyWriter.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.io.writers;
 

diff --git a/forester/java/src/org/forester/msa/BasicMsa.java b/forester/java/src/org/forester/msa/BasicMsa.java
index 907d212..5fc2590 100644 (file)
--- a/forester/java/src/org/forester/msa/BasicMsa.java
+++ b/forester/java/src/org/forester/msa/BasicMsa.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.msa;
 

diff --git a/forester/java/src/org/forester/msa/ClustalOmega.java b/forester/java/src/org/forester/msa/ClustalOmega.java
index 938fc78..417e889 100644 (file)
--- a/forester/java/src/org/forester/msa/ClustalOmega.java
+++ b/forester/java/src/org/forester/msa/ClustalOmega.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.msa;
 

diff --git a/forester/java/src/org/forester/msa/Mafft.java b/forester/java/src/org/forester/msa/Mafft.java
index ec72c0d..ae9fdf1 100644 (file)
--- a/forester/java/src/org/forester/msa/Mafft.java
+++ b/forester/java/src/org/forester/msa/Mafft.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.msa;
 

diff --git a/forester/java/src/org/forester/msa/Msa.java b/forester/java/src/org/forester/msa/Msa.java
index 790b674..1eb9533 100644 (file)
--- a/forester/java/src/org/forester/msa/Msa.java
+++ b/forester/java/src/org/forester/msa/Msa.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.msa;
 

diff --git a/forester/java/src/org/forester/msa/MsaFormatException.java b/forester/java/src/org/forester/msa/MsaFormatException.java
index 791ccd9..1ae1bfc 100644 (file)
--- a/forester/java/src/org/forester/msa/MsaFormatException.java
+++ b/forester/java/src/org/forester/msa/MsaFormatException.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.msa;
 

diff --git a/forester/java/src/org/forester/msa/MsaInferrer.java b/forester/java/src/org/forester/msa/MsaInferrer.java
index 8c839f9..55aa7f7 100644 (file)
--- a/forester/java/src/org/forester/msa/MsaInferrer.java
+++ b/forester/java/src/org/forester/msa/MsaInferrer.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.msa;
 

diff --git a/forester/java/src/org/forester/msa/MsaMethods.java b/forester/java/src/org/forester/msa/MsaMethods.java
index ee9338b..06ca50b 100644 (file)
--- a/forester/java/src/org/forester/msa/MsaMethods.java
+++ b/forester/java/src/org/forester/msa/MsaMethods.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.msa;
 

diff --git a/forester/java/src/org/forester/msa/ResampleableMsa.java b/forester/java/src/org/forester/msa/ResampleableMsa.java
index ad36c53..b7c8a7d 100644 (file)
--- a/forester/java/src/org/forester/msa/ResampleableMsa.java
+++ b/forester/java/src/org/forester/msa/ResampleableMsa.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.msa;
 

diff --git a/forester/java/src/org/forester/pccx/BasicExternalNodeBasedCoverageExtender.java b/forester/java/src/org/forester/pccx/BasicExternalNodeBasedCoverageExtender.java
index 9df3549..83fcda5 100644 (file)
--- a/forester/java/src/org/forester/pccx/BasicExternalNodeBasedCoverageExtender.java
+++ b/forester/java/src/org/forester/pccx/BasicExternalNodeBasedCoverageExtender.java
@@ -22,7 +22,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.pccx;
 

diff --git a/forester/java/src/org/forester/pccx/BranchCountingBasedScoringMethod.java b/forester/java/src/org/forester/pccx/BranchCountingBasedScoringMethod.java
index f1b2268..00b4d48 100644 (file)
--- a/forester/java/src/org/forester/pccx/BranchCountingBasedScoringMethod.java
+++ b/forester/java/src/org/forester/pccx/BranchCountingBasedScoringMethod.java
@@ -22,7 +22,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.pccx;
 

diff --git a/forester/java/src/org/forester/pccx/BranchLengthBasedScoringMethod.java b/forester/java/src/org/forester/pccx/BranchLengthBasedScoringMethod.java
index 2b14bf4..5086f7d 100644 (file)
--- a/forester/java/src/org/forester/pccx/BranchLengthBasedScoringMethod.java
+++ b/forester/java/src/org/forester/pccx/BranchLengthBasedScoringMethod.java
@@ -22,7 +22,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.pccx;
 

diff --git a/forester/java/src/org/forester/pccx/Coverage.java b/forester/java/src/org/forester/pccx/Coverage.java
index c5d90ff..685333a 100644 (file)
--- a/forester/java/src/org/forester/pccx/Coverage.java
+++ b/forester/java/src/org/forester/pccx/Coverage.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.pccx;
 

diff --git a/forester/java/src/org/forester/pccx/CoverageCalculationMethod.java b/forester/java/src/org/forester/pccx/CoverageCalculationMethod.java
index 265e284..4ef0b78 100644 (file)
--- a/forester/java/src/org/forester/pccx/CoverageCalculationMethod.java
+++ b/forester/java/src/org/forester/pccx/CoverageCalculationMethod.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.pccx;
 

diff --git a/forester/java/src/org/forester/pccx/CoverageCalculationOptions.java b/forester/java/src/org/forester/pccx/CoverageCalculationOptions.java
index c757c3b..1249d11 100644 (file)
--- a/forester/java/src/org/forester/pccx/CoverageCalculationOptions.java
+++ b/forester/java/src/org/forester/pccx/CoverageCalculationOptions.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.pccx;
 

diff --git a/forester/java/src/org/forester/pccx/CoverageCalculator.java b/forester/java/src/org/forester/pccx/CoverageCalculator.java
index 2f16ae1..2031778 100644 (file)
--- a/forester/java/src/org/forester/pccx/CoverageCalculator.java
+++ b/forester/java/src/org/forester/pccx/CoverageCalculator.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.pccx;
 

diff --git a/forester/java/src/org/forester/pccx/CoverageExtender.java b/forester/java/src/org/forester/pccx/CoverageExtender.java
index 335b99b..dec2298 100644 (file)
--- a/forester/java/src/org/forester/pccx/CoverageExtender.java
+++ b/forester/java/src/org/forester/pccx/CoverageExtender.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.pccx;
 

diff --git a/forester/java/src/org/forester/pccx/ExternalNodeBasedCoverage.java b/forester/java/src/org/forester/pccx/ExternalNodeBasedCoverage.java
index d56917b..661fd0a 100644 (file)
--- a/forester/java/src/org/forester/pccx/ExternalNodeBasedCoverage.java
+++ b/forester/java/src/org/forester/pccx/ExternalNodeBasedCoverage.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.pccx;
 

diff --git a/forester/java/src/org/forester/pccx/ExternalNodeBasedCoverageMethod.java b/forester/java/src/org/forester/pccx/ExternalNodeBasedCoverageMethod.java
index a88018f..5e73593 100644 (file)
--- a/forester/java/src/org/forester/pccx/ExternalNodeBasedCoverageMethod.java
+++ b/forester/java/src/org/forester/pccx/ExternalNodeBasedCoverageMethod.java
@@ -22,7 +22,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.pccx;
 

diff --git a/forester/java/src/org/forester/pccx/ExternalNodeBasedCoverageMethodOptions.java b/forester/java/src/org/forester/pccx/ExternalNodeBasedCoverageMethodOptions.java
index 70b7265..bd5da8b 100644 (file)
--- a/forester/java/src/org/forester/pccx/ExternalNodeBasedCoverageMethodOptions.java
+++ b/forester/java/src/org/forester/pccx/ExternalNodeBasedCoverageMethodOptions.java
@@ -22,7 +22,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.pccx;
 

diff --git a/forester/java/src/org/forester/pccx/LogBranchLengthBasedScoringMethod.java b/forester/java/src/org/forester/pccx/LogBranchLengthBasedScoringMethod.java
index 62b4390..7ba40cb 100644 (file)
--- a/forester/java/src/org/forester/pccx/LogBranchLengthBasedScoringMethod.java
+++ b/forester/java/src/org/forester/pccx/LogBranchLengthBasedScoringMethod.java
@@ -22,7 +22,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.pccx;
 

diff --git a/forester/java/src/org/forester/pccx/ModelingUtils.java b/forester/java/src/org/forester/pccx/ModelingUtils.java
index 929f2e1..f8d4062 100644 (file)
--- a/forester/java/src/org/forester/pccx/ModelingUtils.java
+++ b/forester/java/src/org/forester/pccx/ModelingUtils.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.pccx;
 

diff --git a/forester/java/src/org/forester/pccx/ScoringMethodForExternalNode.java b/forester/java/src/org/forester/pccx/ScoringMethodForExternalNode.java
index 5fab38a..d34fa09 100644 (file)
--- a/forester/java/src/org/forester/pccx/ScoringMethodForExternalNode.java
+++ b/forester/java/src/org/forester/pccx/ScoringMethodForExternalNode.java
@@ -22,7 +22,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.pccx;
 

diff --git a/forester/java/src/org/forester/pccx/TestPccx.java b/forester/java/src/org/forester/pccx/TestPccx.java
index 642d919..2e36f25 100644 (file)
--- a/forester/java/src/org/forester/pccx/TestPccx.java
+++ b/forester/java/src/org/forester/pccx/TestPccx.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.pccx;
 

diff --git a/forester/java/src/org/forester/phylogeny/Phylogeny.java b/forester/java/src/org/forester/phylogeny/Phylogeny.java
index aaa0fd3..67cdeb5 100644 (file)
--- a/forester/java/src/org/forester/phylogeny/Phylogeny.java
+++ b/forester/java/src/org/forester/phylogeny/Phylogeny.java
@@ -23,7 +23,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.phylogeny;
 

diff --git a/forester/java/src/org/forester/phylogeny/PhylogenyBranch.java b/forester/java/src/org/forester/phylogeny/PhylogenyBranch.java
index 5752fbf..4b9c673 100644 (file)
--- a/forester/java/src/org/forester/phylogeny/PhylogenyBranch.java
+++ b/forester/java/src/org/forester/phylogeny/PhylogenyBranch.java
@@ -23,7 +23,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.phylogeny;
 

diff --git a/forester/java/src/org/forester/phylogeny/PhylogenyMethods.java b/forester/java/src/org/forester/phylogeny/PhylogenyMethods.java
index f2a982d..d87188b 100644 (file)
--- a/forester/java/src/org/forester/phylogeny/PhylogenyMethods.java
+++ b/forester/java/src/org/forester/phylogeny/PhylogenyMethods.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.phylogeny;
 

diff --git a/forester/java/src/org/forester/phylogeny/PhylogenyNode.java b/forester/java/src/org/forester/phylogeny/PhylogenyNode.java
index 819ba7a..9663845 100644 (file)
--- a/forester/java/src/org/forester/phylogeny/PhylogenyNode.java
+++ b/forester/java/src/org/forester/phylogeny/PhylogenyNode.java
@@ -23,7 +23,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.phylogeny;
 

diff --git a/forester/java/src/org/forester/phylogeny/data/Annotation.java b/forester/java/src/org/forester/phylogeny/data/Annotation.java
index 829707a..260c055 100644 (file)
--- a/forester/java/src/org/forester/phylogeny/data/Annotation.java
+++ b/forester/java/src/org/forester/phylogeny/data/Annotation.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.phylogeny.data;
 

diff --git a/forester/java/src/org/forester/phylogeny/data/BinaryCharacters.java b/forester/java/src/org/forester/phylogeny/data/BinaryCharacters.java
index add1dfa..cea856f 100644 (file)
--- a/forester/java/src/org/forester/phylogeny/data/BinaryCharacters.java
+++ b/forester/java/src/org/forester/phylogeny/data/BinaryCharacters.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.phylogeny.data;
 

diff --git a/forester/java/src/org/forester/phylogeny/data/BranchColor.java b/forester/java/src/org/forester/phylogeny/data/BranchColor.java
index 84a356b..50d7054 100644 (file)
--- a/forester/java/src/org/forester/phylogeny/data/BranchColor.java
+++ b/forester/java/src/org/forester/phylogeny/data/BranchColor.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.phylogeny.data;
 

diff --git a/forester/java/src/org/forester/phylogeny/data/BranchData.java b/forester/java/src/org/forester/phylogeny/data/BranchData.java
index 6a517b8..68f8e2c 100644 (file)
--- a/forester/java/src/org/forester/phylogeny/data/BranchData.java
+++ b/forester/java/src/org/forester/phylogeny/data/BranchData.java
@@ -23,7 +23,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.phylogeny.data;
 

diff --git a/forester/java/src/org/forester/phylogeny/data/BranchWidth.java b/forester/java/src/org/forester/phylogeny/data/BranchWidth.java
index cfdf90d..cc7d853 100644 (file)
--- a/forester/java/src/org/forester/phylogeny/data/BranchWidth.java
+++ b/forester/java/src/org/forester/phylogeny/data/BranchWidth.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.phylogeny.data;
 

diff --git a/forester/java/src/org/forester/phylogeny/data/Confidence.java b/forester/java/src/org/forester/phylogeny/data/Confidence.java
index e9e631a..4ea14ef 100644 (file)
--- a/forester/java/src/org/forester/phylogeny/data/Confidence.java
+++ b/forester/java/src/org/forester/phylogeny/data/Confidence.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.phylogeny.data;
 

diff --git a/forester/java/src/org/forester/phylogeny/data/Date.java b/forester/java/src/org/forester/phylogeny/data/Date.java
index af70f80..5cd1039 100644 (file)
--- a/forester/java/src/org/forester/phylogeny/data/Date.java
+++ b/forester/java/src/org/forester/phylogeny/data/Date.java
@@ -23,7 +23,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.phylogeny.data;
 

diff --git a/forester/java/src/org/forester/phylogeny/data/Distribution.java b/forester/java/src/org/forester/phylogeny/data/Distribution.java
index e799d82..0616f94 100644 (file)
--- a/forester/java/src/org/forester/phylogeny/data/Distribution.java
+++ b/forester/java/src/org/forester/phylogeny/data/Distribution.java
@@ -23,7 +23,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.phylogeny.data;
 

diff --git a/forester/java/src/org/forester/phylogeny/data/DomainArchitecture.java b/forester/java/src/org/forester/phylogeny/data/DomainArchitecture.java
index 3dcf02a..0f09c55 100644 (file)
--- a/forester/java/src/org/forester/phylogeny/data/DomainArchitecture.java
+++ b/forester/java/src/org/forester/phylogeny/data/DomainArchitecture.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.phylogeny.data;
 

diff --git a/forester/java/src/org/forester/phylogeny/data/Event.java b/forester/java/src/org/forester/phylogeny/data/Event.java
index c362f7c..afd714c 100644 (file)
--- a/forester/java/src/org/forester/phylogeny/data/Event.java
+++ b/forester/java/src/org/forester/phylogeny/data/Event.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.phylogeny.data;
 

diff --git a/forester/java/src/org/forester/phylogeny/data/Identifier.java b/forester/java/src/org/forester/phylogeny/data/Identifier.java
index 97297f8..8a897af 100644 (file)
--- a/forester/java/src/org/forester/phylogeny/data/Identifier.java
+++ b/forester/java/src/org/forester/phylogeny/data/Identifier.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.phylogeny.data;
 

diff --git a/forester/java/src/org/forester/phylogeny/data/MultipleUris.java b/forester/java/src/org/forester/phylogeny/data/MultipleUris.java
index acf9ca0..fcde7d4 100644 (file)
--- a/forester/java/src/org/forester/phylogeny/data/MultipleUris.java
+++ b/forester/java/src/org/forester/phylogeny/data/MultipleUris.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.phylogeny.data;
 

diff --git a/forester/java/src/org/forester/phylogeny/data/NodeData.java b/forester/java/src/org/forester/phylogeny/data/NodeData.java
index bc7e8b9..6677f0f 100644 (file)
--- a/forester/java/src/org/forester/phylogeny/data/NodeData.java
+++ b/forester/java/src/org/forester/phylogeny/data/NodeData.java
@@ -23,7 +23,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.phylogeny.data;
 

diff --git a/forester/java/src/org/forester/phylogeny/data/PhylogenyData.java b/forester/java/src/org/forester/phylogeny/data/PhylogenyData.java
index 0bf8484..2db9364 100644 (file)
--- a/forester/java/src/org/forester/phylogeny/data/PhylogenyData.java
+++ b/forester/java/src/org/forester/phylogeny/data/PhylogenyData.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.phylogeny.data;
 

diff --git a/forester/java/src/org/forester/phylogeny/data/PhylogenyDataUtil.java b/forester/java/src/org/forester/phylogeny/data/PhylogenyDataUtil.java
index f129259..09707cd 100644 (file)
--- a/forester/java/src/org/forester/phylogeny/data/PhylogenyDataUtil.java
+++ b/forester/java/src/org/forester/phylogeny/data/PhylogenyDataUtil.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.phylogeny.data;
 

diff --git a/forester/java/src/org/forester/phylogeny/data/Polygon.java b/forester/java/src/org/forester/phylogeny/data/Polygon.java
index 577a532..feed628 100644 (file)
--- a/forester/java/src/org/forester/phylogeny/data/Polygon.java
+++ b/forester/java/src/org/forester/phylogeny/data/Polygon.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.phylogeny.data;
 

diff --git a/forester/java/src/org/forester/phylogeny/data/PropertiesMap.java b/forester/java/src/org/forester/phylogeny/data/PropertiesMap.java
index 1a9d6a1..0f47f27 100644 (file)
--- a/forester/java/src/org/forester/phylogeny/data/PropertiesMap.java
+++ b/forester/java/src/org/forester/phylogeny/data/PropertiesMap.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.phylogeny.data;
 

diff --git a/forester/java/src/org/forester/phylogeny/data/Property.java b/forester/java/src/org/forester/phylogeny/data/Property.java
index ff14b0f..b7b7c17 100644 (file)
--- a/forester/java/src/org/forester/phylogeny/data/Property.java
+++ b/forester/java/src/org/forester/phylogeny/data/Property.java
@@ -23,7 +23,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.phylogeny.data;
 

diff --git a/forester/java/src/org/forester/phylogeny/data/ProteinDomain.java b/forester/java/src/org/forester/phylogeny/data/ProteinDomain.java
index 5964f47..3adcdfd 100644 (file)
--- a/forester/java/src/org/forester/phylogeny/data/ProteinDomain.java
+++ b/forester/java/src/org/forester/phylogeny/data/ProteinDomain.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.phylogeny.data;
 

diff --git a/forester/java/src/org/forester/phylogeny/data/Sequence.java b/forester/java/src/org/forester/phylogeny/data/Sequence.java
index b549890..b9e6aa3 100644 (file)
--- a/forester/java/src/org/forester/phylogeny/data/Sequence.java
+++ b/forester/java/src/org/forester/phylogeny/data/Sequence.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.phylogeny.data;
 

diff --git a/forester/java/src/org/forester/phylogeny/data/SequenceRelation.java b/forester/java/src/org/forester/phylogeny/data/SequenceRelation.java
index b8ba724..45134e4 100644 (file)
--- a/forester/java/src/org/forester/phylogeny/data/SequenceRelation.java
+++ b/forester/java/src/org/forester/phylogeny/data/SequenceRelation.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.phylogeny.data;
 

diff --git a/forester/java/src/org/forester/phylogeny/data/Taxonomy.java b/forester/java/src/org/forester/phylogeny/data/Taxonomy.java
index 544522b..b354921 100644 (file)
--- a/forester/java/src/org/forester/phylogeny/data/Taxonomy.java
+++ b/forester/java/src/org/forester/phylogeny/data/Taxonomy.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.phylogeny.data;
 

diff --git a/forester/java/src/org/forester/phylogeny/data/Uri.java b/forester/java/src/org/forester/phylogeny/data/Uri.java
index 118a8e4..fb97b22 100644 (file)
--- a/forester/java/src/org/forester/phylogeny/data/Uri.java
+++ b/forester/java/src/org/forester/phylogeny/data/Uri.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.phylogeny.data;
 

diff --git a/forester/java/src/org/forester/phylogeny/factories/BasicPhylogenyFactory.java b/forester/java/src/org/forester/phylogeny/factories/BasicPhylogenyFactory.java
index dbe565e..d0abe40 100644 (file)
--- a/forester/java/src/org/forester/phylogeny/factories/BasicPhylogenyFactory.java
+++ b/forester/java/src/org/forester/phylogeny/factories/BasicPhylogenyFactory.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.phylogeny.factories;
 

diff --git a/forester/java/src/org/forester/phylogeny/factories/ParserBasedPhylogenyFactory.java b/forester/java/src/org/forester/phylogeny/factories/ParserBasedPhylogenyFactory.java
index 1828852..14f2f20 100644 (file)
--- a/forester/java/src/org/forester/phylogeny/factories/ParserBasedPhylogenyFactory.java
+++ b/forester/java/src/org/forester/phylogeny/factories/ParserBasedPhylogenyFactory.java
@@ -22,7 +22,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.phylogeny.factories;
 

diff --git a/forester/java/src/org/forester/phylogeny/factories/PhylogenyFactory.java b/forester/java/src/org/forester/phylogeny/factories/PhylogenyFactory.java
index 565e31a..7b2eac9 100644 (file)
--- a/forester/java/src/org/forester/phylogeny/factories/PhylogenyFactory.java
+++ b/forester/java/src/org/forester/phylogeny/factories/PhylogenyFactory.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.phylogeny.factories;
 

diff --git a/forester/java/src/org/forester/phylogeny/iterators/ExternalForwardIterator.java b/forester/java/src/org/forester/phylogeny/iterators/ExternalForwardIterator.java
index 4e6df65..35a02aa 100644 (file)
--- a/forester/java/src/org/forester/phylogeny/iterators/ExternalForwardIterator.java
+++ b/forester/java/src/org/forester/phylogeny/iterators/ExternalForwardIterator.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.phylogeny.iterators;
 

diff --git a/forester/java/src/org/forester/phylogeny/iterators/LevelOrderTreeIterator.java b/forester/java/src/org/forester/phylogeny/iterators/LevelOrderTreeIterator.java
index f5ab499..cc8e11b 100644 (file)
--- a/forester/java/src/org/forester/phylogeny/iterators/LevelOrderTreeIterator.java
+++ b/forester/java/src/org/forester/phylogeny/iterators/LevelOrderTreeIterator.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.phylogeny.iterators;
 

diff --git a/forester/java/src/org/forester/phylogeny/iterators/PhylogenyNodeIterator.java b/forester/java/src/org/forester/phylogeny/iterators/PhylogenyNodeIterator.java
index f10aecd..1fa01bd 100644 (file)
--- a/forester/java/src/org/forester/phylogeny/iterators/PhylogenyNodeIterator.java
+++ b/forester/java/src/org/forester/phylogeny/iterators/PhylogenyNodeIterator.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.phylogeny.iterators;
 

diff --git a/forester/java/src/org/forester/phylogeny/iterators/PostOrderStackObject.java b/forester/java/src/org/forester/phylogeny/iterators/PostOrderStackObject.java
index ae291ee..a3f004f 100644 (file)
--- a/forester/java/src/org/forester/phylogeny/iterators/PostOrderStackObject.java
+++ b/forester/java/src/org/forester/phylogeny/iterators/PostOrderStackObject.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.phylogeny.iterators;
 

diff --git a/forester/java/src/org/forester/phylogeny/iterators/PostorderTreeIterator.java b/forester/java/src/org/forester/phylogeny/iterators/PostorderTreeIterator.java
index 737a75d..9819b58 100644 (file)
--- a/forester/java/src/org/forester/phylogeny/iterators/PostorderTreeIterator.java
+++ b/forester/java/src/org/forester/phylogeny/iterators/PostorderTreeIterator.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.phylogeny.iterators;
 

diff --git a/forester/java/src/org/forester/phylogeny/iterators/PreorderTreeIterator.java b/forester/java/src/org/forester/phylogeny/iterators/PreorderTreeIterator.java
index c4e06f0..9d6f690 100644 (file)
--- a/forester/java/src/org/forester/phylogeny/iterators/PreorderTreeIterator.java
+++ b/forester/java/src/org/forester/phylogeny/iterators/PreorderTreeIterator.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.phylogeny.iterators;
 

diff --git a/forester/java/src/org/forester/protein/BasicDomain.java b/forester/java/src/org/forester/protein/BasicDomain.java
index c6c5288..0232b91 100644 (file)
--- a/forester/java/src/org/forester/protein/BasicDomain.java
+++ b/forester/java/src/org/forester/protein/BasicDomain.java
@@ -22,7 +22,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.protein;
 

diff --git a/forester/java/src/org/forester/protein/BasicProtein.java b/forester/java/src/org/forester/protein/BasicProtein.java
index b364e29..9b688c9 100644 (file)
--- a/forester/java/src/org/forester/protein/BasicProtein.java
+++ b/forester/java/src/org/forester/protein/BasicProtein.java
@@ -22,7 +22,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.protein;
 

diff --git a/forester/java/src/org/forester/protein/BinaryDomainCombination.java b/forester/java/src/org/forester/protein/BinaryDomainCombination.java
index 02bd7f8..1098644 100644 (file)
--- a/forester/java/src/org/forester/protein/BinaryDomainCombination.java
+++ b/forester/java/src/org/forester/protein/BinaryDomainCombination.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.protein;
 

diff --git a/forester/java/src/org/forester/protein/Domain.java b/forester/java/src/org/forester/protein/Domain.java
index c2a09b9..3ede985 100644 (file)
--- a/forester/java/src/org/forester/protein/Domain.java
+++ b/forester/java/src/org/forester/protein/Domain.java
@@ -22,7 +22,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.protein;
 

diff --git a/forester/java/src/org/forester/protein/DomainId.java b/forester/java/src/org/forester/protein/DomainId.java
index 72bb39b..89a23cf 100644 (file)
--- a/forester/java/src/org/forester/protein/DomainId.java
+++ b/forester/java/src/org/forester/protein/DomainId.java
@@ -22,7 +22,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.protein;
 

diff --git a/forester/java/src/org/forester/protein/Protein.java b/forester/java/src/org/forester/protein/Protein.java
index a4512df..7206545 100644 (file)
--- a/forester/java/src/org/forester/protein/Protein.java
+++ b/forester/java/src/org/forester/protein/Protein.java
@@ -22,7 +22,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.protein;
 

diff --git a/forester/java/src/org/forester/protein/ProteinId.java b/forester/java/src/org/forester/protein/ProteinId.java
index 0319e99..bb13c6b 100644 (file)
--- a/forester/java/src/org/forester/protein/ProteinId.java
+++ b/forester/java/src/org/forester/protein/ProteinId.java
@@ -22,7 +22,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.protein;
 

diff --git a/forester/java/src/org/forester/rio/RIO.java b/forester/java/src/org/forester/rio/RIO.java
index d844d2b..cf5475f 100644 (file)
--- a/forester/java/src/org/forester/rio/RIO.java
+++ b/forester/java/src/org/forester/rio/RIO.java
@@ -23,7 +23,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.rio;
 

diff --git a/forester/java/src/org/forester/sdi/GSDI.java b/forester/java/src/org/forester/sdi/GSDI.java
index 63c6215..9f95b24 100644 (file)
--- a/forester/java/src/org/forester/sdi/GSDI.java
+++ b/forester/java/src/org/forester/sdi/GSDI.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.sdi;
 

diff --git a/forester/java/src/org/forester/sdi/SDI.java b/forester/java/src/org/forester/sdi/SDI.java
index 0bb74d3..2c59efa 100644 (file)
--- a/forester/java/src/org/forester/sdi/SDI.java
+++ b/forester/java/src/org/forester/sdi/SDI.java
@@ -23,7 +23,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.sdi;
 

diff --git a/forester/java/src/org/forester/sdi/SDIR.java b/forester/java/src/org/forester/sdi/SDIR.java
index 7af2359..85481ff 100644 (file)
--- a/forester/java/src/org/forester/sdi/SDIR.java
+++ b/forester/java/src/org/forester/sdi/SDIR.java
@@ -23,7 +23,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.sdi;
 

diff --git a/forester/java/src/org/forester/sdi/TestGSDI.java b/forester/java/src/org/forester/sdi/TestGSDI.java
index e7a9b46..4e39e5c 100644 (file)
--- a/forester/java/src/org/forester/sdi/TestGSDI.java
+++ b/forester/java/src/org/forester/sdi/TestGSDI.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.sdi;
 

diff --git a/forester/java/src/org/forester/sequence/BasicSequence.java b/forester/java/src/org/forester/sequence/BasicSequence.java
index 6b76f92..4a4662a 100644 (file)
--- a/forester/java/src/org/forester/sequence/BasicSequence.java
+++ b/forester/java/src/org/forester/sequence/BasicSequence.java
@@ -22,7 +22,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.sequence;
 

diff --git a/forester/java/src/org/forester/sequence/Sequence.java b/forester/java/src/org/forester/sequence/Sequence.java
index 90f3b04..3e2473a 100644 (file)
--- a/forester/java/src/org/forester/sequence/Sequence.java
+++ b/forester/java/src/org/forester/sequence/Sequence.java
@@ -22,7 +22,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.sequence;
 

diff --git a/forester/java/src/org/forester/species/BasicSpecies.java b/forester/java/src/org/forester/species/BasicSpecies.java
index 136b507..326c661 100644 (file)
--- a/forester/java/src/org/forester/species/BasicSpecies.java
+++ b/forester/java/src/org/forester/species/BasicSpecies.java
@@ -22,7 +22,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.species;
 

diff --git a/forester/java/src/org/forester/species/Species.java b/forester/java/src/org/forester/species/Species.java
index b54e5eb..b5331df 100644 (file)
--- a/forester/java/src/org/forester/species/Species.java
+++ b/forester/java/src/org/forester/species/Species.java
@@ -22,7 +22,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.species;
 

diff --git a/forester/java/src/org/forester/surfacing/AdjactantDirectedBinaryDomainCombination.java b/forester/java/src/org/forester/surfacing/AdjactantDirectedBinaryDomainCombination.java
index 3da8ed4..9d9a441 100644 (file)
--- a/forester/java/src/org/forester/surfacing/AdjactantDirectedBinaryDomainCombination.java
+++ b/forester/java/src/org/forester/surfacing/AdjactantDirectedBinaryDomainCombination.java
@@ -22,7 +22,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.surfacing;
 

diff --git a/forester/java/src/org/forester/surfacing/BasicBinaryDomainCombination.java b/forester/java/src/org/forester/surfacing/BasicBinaryDomainCombination.java
index 67e5ffd..39c7450 100644 (file)
--- a/forester/java/src/org/forester/surfacing/BasicBinaryDomainCombination.java
+++ b/forester/java/src/org/forester/surfacing/BasicBinaryDomainCombination.java
@@ -22,7 +22,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.surfacing;
 

diff --git a/forester/java/src/org/forester/surfacing/BasicCombinableDomains.java b/forester/java/src/org/forester/surfacing/BasicCombinableDomains.java
index 23f3058..300a4ed 100644 (file)
--- a/forester/java/src/org/forester/surfacing/BasicCombinableDomains.java
+++ b/forester/java/src/org/forester/surfacing/BasicCombinableDomains.java
@@ -22,7 +22,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.surfacing;
 

diff --git a/forester/java/src/org/forester/surfacing/BasicDomainSimilarityCalculator.java b/forester/java/src/org/forester/surfacing/BasicDomainSimilarityCalculator.java
index 69adcb9..9a9bbfb 100644 (file)
--- a/forester/java/src/org/forester/surfacing/BasicDomainSimilarityCalculator.java
+++ b/forester/java/src/org/forester/surfacing/BasicDomainSimilarityCalculator.java
@@ -23,7 +23,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.surfacing;
 

diff --git a/forester/java/src/org/forester/surfacing/CombinableDomains.java b/forester/java/src/org/forester/surfacing/CombinableDomains.java
index d90eed4..28ca259 100644 (file)
--- a/forester/java/src/org/forester/surfacing/CombinableDomains.java
+++ b/forester/java/src/org/forester/surfacing/CombinableDomains.java
@@ -22,7 +22,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.surfacing;
 

diff --git a/forester/java/src/org/forester/surfacing/CombinationsBasedPairwiseDomainSimilarity.java b/forester/java/src/org/forester/surfacing/CombinationsBasedPairwiseDomainSimilarity.java
index 3b0c6dc..f271afa 100644 (file)
--- a/forester/java/src/org/forester/surfacing/CombinationsBasedPairwiseDomainSimilarity.java
+++ b/forester/java/src/org/forester/surfacing/CombinationsBasedPairwiseDomainSimilarity.java
@@ -23,7 +23,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.surfacing;
 

diff --git a/forester/java/src/org/forester/surfacing/CombinationsBasedPairwiseDomainSimilarityCalculator.java b/forester/java/src/org/forester/surfacing/CombinationsBasedPairwiseDomainSimilarityCalculator.java
index 965f595..27327b6 100644 (file)
--- a/forester/java/src/org/forester/surfacing/CombinationsBasedPairwiseDomainSimilarityCalculator.java
+++ b/forester/java/src/org/forester/surfacing/CombinationsBasedPairwiseDomainSimilarityCalculator.java
@@ -23,7 +23,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.surfacing;
 

diff --git a/forester/java/src/org/forester/surfacing/CountsBasedPairwiseDomainSimilarity.java b/forester/java/src/org/forester/surfacing/CountsBasedPairwiseDomainSimilarity.java
index a037ed5..81fdce7 100644 (file)
--- a/forester/java/src/org/forester/surfacing/CountsBasedPairwiseDomainSimilarity.java
+++ b/forester/java/src/org/forester/surfacing/CountsBasedPairwiseDomainSimilarity.java
@@ -23,7 +23,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.surfacing;
 

diff --git a/forester/java/src/org/forester/surfacing/DirectedBinaryDomainCombination.java b/forester/java/src/org/forester/surfacing/DirectedBinaryDomainCombination.java
index e57e137..2e5d797 100644 (file)
--- a/forester/java/src/org/forester/surfacing/DirectedBinaryDomainCombination.java
+++ b/forester/java/src/org/forester/surfacing/DirectedBinaryDomainCombination.java
@@ -22,7 +22,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.surfacing;
 

diff --git a/forester/java/src/org/forester/surfacing/DirectedCombinableDomains.java b/forester/java/src/org/forester/surfacing/DirectedCombinableDomains.java
index 1f2a674..16c2940 100644 (file)
--- a/forester/java/src/org/forester/surfacing/DirectedCombinableDomains.java
+++ b/forester/java/src/org/forester/surfacing/DirectedCombinableDomains.java
@@ -22,7 +22,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.surfacing;
 

diff --git a/forester/java/src/org/forester/surfacing/DomainArchitectureBasedGenomeSimilarityCalculator.java b/forester/java/src/org/forester/surfacing/DomainArchitectureBasedGenomeSimilarityCalculator.java
index 1461963..cdc9416 100644 (file)
--- a/forester/java/src/org/forester/surfacing/DomainArchitectureBasedGenomeSimilarityCalculator.java
+++ b/forester/java/src/org/forester/surfacing/DomainArchitectureBasedGenomeSimilarityCalculator.java
@@ -22,7 +22,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.surfacing;
 

diff --git a/forester/java/src/org/forester/surfacing/DomainCountsBasedPairwiseSimilarityCalculator.java b/forester/java/src/org/forester/surfacing/DomainCountsBasedPairwiseSimilarityCalculator.java
index c61dcad..6077ffc 100644 (file)
--- a/forester/java/src/org/forester/surfacing/DomainCountsBasedPairwiseSimilarityCalculator.java
+++ b/forester/java/src/org/forester/surfacing/DomainCountsBasedPairwiseSimilarityCalculator.java
@@ -23,7 +23,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.surfacing;
 

diff --git a/forester/java/src/org/forester/surfacing/DomainCountsDifferenceUtil.java b/forester/java/src/org/forester/surfacing/DomainCountsDifferenceUtil.java
index 1a742fd..20a25d4 100644 (file)
--- a/forester/java/src/org/forester/surfacing/DomainCountsDifferenceUtil.java
+++ b/forester/java/src/org/forester/surfacing/DomainCountsDifferenceUtil.java
@@ -23,7 +23,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.surfacing;
 

diff --git a/forester/java/src/org/forester/surfacing/DomainLengths.java b/forester/java/src/org/forester/surfacing/DomainLengths.java
index 37ebfdc..7e628ce 100644 (file)
--- a/forester/java/src/org/forester/surfacing/DomainLengths.java
+++ b/forester/java/src/org/forester/surfacing/DomainLengths.java
@@ -22,7 +22,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.surfacing;
 

diff --git a/forester/java/src/org/forester/surfacing/DomainLengthsTable.java b/forester/java/src/org/forester/surfacing/DomainLengthsTable.java
index cbd14b0..9a9e0a7 100644 (file)
--- a/forester/java/src/org/forester/surfacing/DomainLengthsTable.java
+++ b/forester/java/src/org/forester/surfacing/DomainLengthsTable.java
@@ -22,7 +22,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.surfacing;
 

diff --git a/forester/java/src/org/forester/surfacing/DomainParsimonyCalculator.java b/forester/java/src/org/forester/surfacing/DomainParsimonyCalculator.java
index 4b7303d..e2e0af3 100644 (file)
--- a/forester/java/src/org/forester/surfacing/DomainParsimonyCalculator.java
+++ b/forester/java/src/org/forester/surfacing/DomainParsimonyCalculator.java
@@ -22,7 +22,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.surfacing;
 

diff --git a/forester/java/src/org/forester/surfacing/DomainSimilarity.java b/forester/java/src/org/forester/surfacing/DomainSimilarity.java
index fc21dda..b9e9860 100644 (file)
--- a/forester/java/src/org/forester/surfacing/DomainSimilarity.java
+++ b/forester/java/src/org/forester/surfacing/DomainSimilarity.java
@@ -22,7 +22,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.surfacing;
 

diff --git a/forester/java/src/org/forester/surfacing/DomainSimilarityCalculator.java b/forester/java/src/org/forester/surfacing/DomainSimilarityCalculator.java
index 27ea841..fa0ea62 100644 (file)
--- a/forester/java/src/org/forester/surfacing/DomainSimilarityCalculator.java
+++ b/forester/java/src/org/forester/surfacing/DomainSimilarityCalculator.java
@@ -23,7 +23,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.surfacing;
 

diff --git a/forester/java/src/org/forester/surfacing/GenomeWideCombinableDomains.java b/forester/java/src/org/forester/surfacing/GenomeWideCombinableDomains.java
index 245f565..f444ff7 100644 (file)
--- a/forester/java/src/org/forester/surfacing/GenomeWideCombinableDomains.java
+++ b/forester/java/src/org/forester/surfacing/GenomeWideCombinableDomains.java
@@ -23,7 +23,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.surfacing;
 

diff --git a/forester/java/src/org/forester/surfacing/PairwiseDomainSimilarity.java b/forester/java/src/org/forester/surfacing/PairwiseDomainSimilarity.java
index 8880b05..2fa6f4e 100644 (file)
--- a/forester/java/src/org/forester/surfacing/PairwiseDomainSimilarity.java
+++ b/forester/java/src/org/forester/surfacing/PairwiseDomainSimilarity.java
@@ -22,7 +22,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.surfacing;
 

diff --git a/forester/java/src/org/forester/surfacing/PairwiseDomainSimilarityCalculator.java b/forester/java/src/org/forester/surfacing/PairwiseDomainSimilarityCalculator.java
index 291a350..58fd1a1 100644 (file)
--- a/forester/java/src/org/forester/surfacing/PairwiseDomainSimilarityCalculator.java
+++ b/forester/java/src/org/forester/surfacing/PairwiseDomainSimilarityCalculator.java
@@ -23,7 +23,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.surfacing;
 

diff --git a/forester/java/src/org/forester/surfacing/PairwiseGenomeComparator.java b/forester/java/src/org/forester/surfacing/PairwiseGenomeComparator.java
index 4c3e442..6281764 100644 (file)
--- a/forester/java/src/org/forester/surfacing/PairwiseGenomeComparator.java
+++ b/forester/java/src/org/forester/surfacing/PairwiseGenomeComparator.java
@@ -22,7 +22,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.surfacing;
 

diff --git a/forester/java/src/org/forester/surfacing/PrintableDomainSimilarity.java b/forester/java/src/org/forester/surfacing/PrintableDomainSimilarity.java
index d4d23db..6966aee 100644 (file)
--- a/forester/java/src/org/forester/surfacing/PrintableDomainSimilarity.java
+++ b/forester/java/src/org/forester/surfacing/PrintableDomainSimilarity.java
@@ -22,7 +22,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.surfacing;
 

diff --git a/forester/java/src/org/forester/surfacing/PrintableSpeciesSpecificDomainSimilariyData.java b/forester/java/src/org/forester/surfacing/PrintableSpeciesSpecificDomainSimilariyData.java
index 7317338..28ca512 100644 (file)
--- a/forester/java/src/org/forester/surfacing/PrintableSpeciesSpecificDomainSimilariyData.java
+++ b/forester/java/src/org/forester/surfacing/PrintableSpeciesSpecificDomainSimilariyData.java
@@ -23,7 +23,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.surfacing;
 

diff --git a/forester/java/src/org/forester/surfacing/ProteinCountsBasedPairwiseDomainSimilarityCalculator.java b/forester/java/src/org/forester/surfacing/ProteinCountsBasedPairwiseDomainSimilarityCalculator.java
index fbcedb6..309d321 100644 (file)
--- a/forester/java/src/org/forester/surfacing/ProteinCountsBasedPairwiseDomainSimilarityCalculator.java
+++ b/forester/java/src/org/forester/surfacing/ProteinCountsBasedPairwiseDomainSimilarityCalculator.java
@@ -23,7 +23,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.surfacing;
 

diff --git a/forester/java/src/org/forester/surfacing/SimpleDomain.java b/forester/java/src/org/forester/surfacing/SimpleDomain.java
index 74173df..5182865 100644 (file)
--- a/forester/java/src/org/forester/surfacing/SimpleDomain.java
+++ b/forester/java/src/org/forester/surfacing/SimpleDomain.java
@@ -22,7 +22,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.surfacing;
 

diff --git a/forester/java/src/org/forester/surfacing/SpeciesSpecificDomainSimilariyData.java b/forester/java/src/org/forester/surfacing/SpeciesSpecificDomainSimilariyData.java
index 1e72929..d605344 100644 (file)
--- a/forester/java/src/org/forester/surfacing/SpeciesSpecificDomainSimilariyData.java
+++ b/forester/java/src/org/forester/surfacing/SpeciesSpecificDomainSimilariyData.java
@@ -23,7 +23,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.surfacing;
 

diff --git a/forester/java/src/org/forester/surfacing/SurfacingConstants.java b/forester/java/src/org/forester/surfacing/SurfacingConstants.java
index c78f157..c1991f6 100644 (file)
--- a/forester/java/src/org/forester/surfacing/SurfacingConstants.java
+++ b/forester/java/src/org/forester/surfacing/SurfacingConstants.java
@@ -22,7 +22,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.surfacing;
 

diff --git a/forester/java/src/org/forester/surfacing/SurfacingUtil.java b/forester/java/src/org/forester/surfacing/SurfacingUtil.java
index 6c036fd..06c8ca0 100644 (file)
--- a/forester/java/src/org/forester/surfacing/SurfacingUtil.java
+++ b/forester/java/src/org/forester/surfacing/SurfacingUtil.java
@@ -22,7 +22,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.surfacing;
 

diff --git a/forester/java/src/org/forester/surfacing/TestSurfacing.java b/forester/java/src/org/forester/surfacing/TestSurfacing.java
index 5cdd6eb..f243dab 100644 (file)
--- a/forester/java/src/org/forester/surfacing/TestSurfacing.java
+++ b/forester/java/src/org/forester/surfacing/TestSurfacing.java
@@ -22,7 +22,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.surfacing;
 

diff --git a/forester/java/src/org/forester/test/Test.java b/forester/java/src/org/forester/test/Test.java
index 7960f72..e4bec20 100644 (file)
--- a/forester/java/src/org/forester/test/Test.java
+++ b/forester/java/src/org/forester/test/Test.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.test;
 

diff --git a/forester/java/src/org/forester/test/examples/Example1.java b/forester/java/src/org/forester/test/examples/Example1.java
index cd65138..63536b7 100644 (file)
--- a/forester/java/src/org/forester/test/examples/Example1.java
+++ b/forester/java/src/org/forester/test/examples/Example1.java
@@ -22,7 +22,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.test.examples;
 

diff --git a/forester/java/src/org/forester/test/examples/Example2.java b/forester/java/src/org/forester/test/examples/Example2.java
index 221ed0b..6f9cfa1 100644 (file)
--- a/forester/java/src/org/forester/test/examples/Example2.java
+++ b/forester/java/src/org/forester/test/examples/Example2.java
@@ -22,7 +22,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.test.examples;
 

diff --git a/forester/java/src/org/forester/test/examples/Example3.java b/forester/java/src/org/forester/test/examples/Example3.java
index d5c2bb6..60354f4 100644 (file)
--- a/forester/java/src/org/forester/test/examples/Example3.java
+++ b/forester/java/src/org/forester/test/examples/Example3.java
@@ -22,7 +22,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.test.examples;
 

diff --git a/forester/java/src/org/forester/test/examples/Example4.java b/forester/java/src/org/forester/test/examples/Example4.java
index 2c5cb17..7f35850 100644 (file)
--- a/forester/java/src/org/forester/test/examples/Example4.java
+++ b/forester/java/src/org/forester/test/examples/Example4.java
@@ -22,7 +22,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.test.examples;
 

diff --git a/forester/java/src/org/forester/test/examples/Example5.java b/forester/java/src/org/forester/test/examples/Example5.java
index facc4b9..09935c8 100644 (file)
--- a/forester/java/src/org/forester/test/examples/Example5.java
+++ b/forester/java/src/org/forester/test/examples/Example5.java
@@ -22,7 +22,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.test.examples;
 

diff --git a/forester/java/src/org/forester/tools/ConfidenceAssessor.java b/forester/java/src/org/forester/tools/ConfidenceAssessor.java
index 1a9d85e..2dc710c 100644 (file)
--- a/forester/java/src/org/forester/tools/ConfidenceAssessor.java
+++ b/forester/java/src/org/forester/tools/ConfidenceAssessor.java
@@ -22,7 +22,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.tools;
 

diff --git a/forester/java/src/org/forester/tools/PhylogenyDecorator.java b/forester/java/src/org/forester/tools/PhylogenyDecorator.java
index f9bcd1f..f4f6c1a 100644 (file)
--- a/forester/java/src/org/forester/tools/PhylogenyDecorator.java
+++ b/forester/java/src/org/forester/tools/PhylogenyDecorator.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.tools;
 

diff --git a/forester/java/src/org/forester/tools/SupportCount.java b/forester/java/src/org/forester/tools/SupportCount.java
index 5c8e924..50702d4 100644 (file)
--- a/forester/java/src/org/forester/tools/SupportCount.java
+++ b/forester/java/src/org/forester/tools/SupportCount.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.tools;
 

diff --git a/forester/java/src/org/forester/tools/TreeSplitMatrix.java b/forester/java/src/org/forester/tools/TreeSplitMatrix.java
index ebd8792..58d6eb6 100644 (file)
--- a/forester/java/src/org/forester/tools/TreeSplitMatrix.java
+++ b/forester/java/src/org/forester/tools/TreeSplitMatrix.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.tools;
 

diff --git a/forester/java/src/org/forester/util/AsciiHistogram.java b/forester/java/src/org/forester/util/AsciiHistogram.java
index f9b0bb3..7c8082f 100644 (file)
--- a/forester/java/src/org/forester/util/AsciiHistogram.java
+++ b/forester/java/src/org/forester/util/AsciiHistogram.java
@@ -22,7 +22,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.util;
 

diff --git a/forester/java/src/org/forester/util/BasicDescriptiveStatistics.java b/forester/java/src/org/forester/util/BasicDescriptiveStatistics.java
index 240d439..057b388 100644 (file)
--- a/forester/java/src/org/forester/util/BasicDescriptiveStatistics.java
+++ b/forester/java/src/org/forester/util/BasicDescriptiveStatistics.java
@@ -23,7 +23,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.util;
 

diff --git a/forester/java/src/org/forester/util/BasicTableParser.java b/forester/java/src/org/forester/util/BasicTableParser.java
index 2917a31..aaa5781 100644 (file)
--- a/forester/java/src/org/forester/util/BasicTableParser.java
+++ b/forester/java/src/org/forester/util/BasicTableParser.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.util;
 

diff --git a/forester/java/src/org/forester/util/CommandLineArguments.java b/forester/java/src/org/forester/util/CommandLineArguments.java
index 91f11bd..7e2a167 100644 (file)
--- a/forester/java/src/org/forester/util/CommandLineArguments.java
+++ b/forester/java/src/org/forester/util/CommandLineArguments.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.util;
 

diff --git a/forester/java/src/org/forester/util/CommandProcessBuilder.java b/forester/java/src/org/forester/util/CommandProcessBuilder.java
index 645a6cd..b5887a8 100644 (file)
--- a/forester/java/src/org/forester/util/CommandProcessBuilder.java
+++ b/forester/java/src/org/forester/util/CommandProcessBuilder.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.util;
 

diff --git a/forester/java/src/org/forester/util/DescriptiveStatistics.java b/forester/java/src/org/forester/util/DescriptiveStatistics.java
index 014b530..beeade9 100644 (file)
--- a/forester/java/src/org/forester/util/DescriptiveStatistics.java
+++ b/forester/java/src/org/forester/util/DescriptiveStatistics.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.util;
 

diff --git a/forester/java/src/org/forester/util/ExternalProgram.java b/forester/java/src/org/forester/util/ExternalProgram.java
index 7a76b6b..d28e31d 100644 (file)
--- a/forester/java/src/org/forester/util/ExternalProgram.java
+++ b/forester/java/src/org/forester/util/ExternalProgram.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.util;
 

diff --git a/forester/java/src/org/forester/util/FailedConditionCheckException.java b/forester/java/src/org/forester/util/FailedConditionCheckException.java
index cad5191..82c65c1 100644 (file)
--- a/forester/java/src/org/forester/util/FailedConditionCheckException.java
+++ b/forester/java/src/org/forester/util/FailedConditionCheckException.java
@@ -22,7 +22,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.util;
 

diff --git a/forester/java/src/org/forester/util/ForesterConstants.java b/forester/java/src/org/forester/util/ForesterConstants.java
index 34b2322..897fb7a 100644 (file)
--- a/forester/java/src/org/forester/util/ForesterConstants.java
+++ b/forester/java/src/org/forester/util/ForesterConstants.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.util;
 

diff --git a/forester/java/src/org/forester/util/ForesterUtil.java b/forester/java/src/org/forester/util/ForesterUtil.java
index cb04e65..caf4045 100644 (file)
--- a/forester/java/src/org/forester/util/ForesterUtil.java
+++ b/forester/java/src/org/forester/util/ForesterUtil.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.util;
 

diff --git a/forester/java/src/org/forester/util/IllegalFormatUseException.java b/forester/java/src/org/forester/util/IllegalFormatUseException.java
index 437d548..6580cf9 100644 (file)
--- a/forester/java/src/org/forester/util/IllegalFormatUseException.java
+++ b/forester/java/src/org/forester/util/IllegalFormatUseException.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.util;
 

diff --git a/forester/java/src/org/forester/util/SequenceIdParser.java b/forester/java/src/org/forester/util/SequenceIdParser.java
index 3b6bc5d..c96d0f4 100644 (file)
--- a/forester/java/src/org/forester/util/SequenceIdParser.java
+++ b/forester/java/src/org/forester/util/SequenceIdParser.java
@@ -24,7 +24,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA\r
 //\r
 // Contact: phylosoft @ gmail . com\r
-// WWW: www.phylosoft.org/forester\r
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester\r
 \r
 package org.forester.util;\r
 \r

diff --git a/forester/java/src/org/forester/util/WindowsUtils.java b/forester/java/src/org/forester/util/WindowsUtils.java
index 9fa599f..b65d9fe 100644 (file)
--- a/forester/java/src/org/forester/util/WindowsUtils.java
+++ b/forester/java/src/org/forester/util/WindowsUtils.java
@@ -19,7 +19,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.util;
 

diff --git a/forester/java/src/org/forester/ws/seqdb/EbiDbEntry.java b/forester/java/src/org/forester/ws/seqdb/EbiDbEntry.java
index d845951..c8131ad 100644 (file)
--- a/forester/java/src/org/forester/ws/seqdb/EbiDbEntry.java
+++ b/forester/java/src/org/forester/ws/seqdb/EbiDbEntry.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.ws.seqdb;
 

diff --git a/forester/java/src/org/forester/ws/seqdb/SequenceDatabaseEntry.java b/forester/java/src/org/forester/ws/seqdb/SequenceDatabaseEntry.java
index 9ae7892..46c5fdf 100644 (file)
--- a/forester/java/src/org/forester/ws/seqdb/SequenceDatabaseEntry.java
+++ b/forester/java/src/org/forester/ws/seqdb/SequenceDatabaseEntry.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.ws.seqdb;
 

diff --git a/forester/java/src/org/forester/ws/seqdb/SequenceDbWsTools.java b/forester/java/src/org/forester/ws/seqdb/SequenceDbWsTools.java
index 5004a47..c2258d6 100644 (file)
--- a/forester/java/src/org/forester/ws/seqdb/SequenceDbWsTools.java
+++ b/forester/java/src/org/forester/ws/seqdb/SequenceDbWsTools.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.ws.seqdb;
 

diff --git a/forester/java/src/org/forester/ws/seqdb/UniProtEntry.java b/forester/java/src/org/forester/ws/seqdb/UniProtEntry.java
index fc85037..263a115 100644 (file)
--- a/forester/java/src/org/forester/ws/seqdb/UniProtEntry.java
+++ b/forester/java/src/org/forester/ws/seqdb/UniProtEntry.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.ws.seqdb;
 

diff --git a/forester/java/src/org/forester/ws/seqdb/UniProtTaxonomy.java b/forester/java/src/org/forester/ws/seqdb/UniProtTaxonomy.java
index 0884a6f..b50d41e 100644 (file)
--- a/forester/java/src/org/forester/ws/seqdb/UniProtTaxonomy.java
+++ b/forester/java/src/org/forester/ws/seqdb/UniProtTaxonomy.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.ws.seqdb;
 

diff --git a/forester/java/src/org/forester/ws/wabi/RestUtil.java b/forester/java/src/org/forester/ws/wabi/RestUtil.java
index fe4a8ee..cce2569 100644 (file)
--- a/forester/java/src/org/forester/ws/wabi/RestUtil.java
+++ b/forester/java/src/org/forester/ws/wabi/RestUtil.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.ws.wabi;
 

diff --git a/forester/java/src/org/forester/ws/wabi/TxSearch.java b/forester/java/src/org/forester/ws/wabi/TxSearch.java
index e4a5b25..78ac76c 100644 (file)
--- a/forester/java/src/org/forester/ws/wabi/TxSearch.java
+++ b/forester/java/src/org/forester/ws/wabi/TxSearch.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.ws.wabi;
 

diff --git a/forester/java/src/org/forester/ws/wabi/WabiTools.java b/forester/java/src/org/forester/ws/wabi/WabiTools.java
index c1a2e79..b5a94dc 100644 (file)
--- a/forester/java/src/org/forester/ws/wabi/WabiTools.java
+++ b/forester/java/src/org/forester/ws/wabi/WabiTools.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.ws.wabi;