--- /dev/null
+/**
+ *
+ */
+package jalview.ws.jws2;
+
+import java.awt.event.ActionEvent;
+import java.awt.event.ActionListener;
+import java.util.List;
+
+import javax.swing.JMenu;
+import javax.swing.JMenuItem;
+
+import compbio.metadata.Argument;
+
+import jalview.api.AlignCalcWorkerI;
+import jalview.datamodel.AlignmentView;
+import jalview.gui.AlignFrame;
+import jalview.gui.JvSwingUtils;
+import jalview.ws.jws2.jabaws2.Jws2Instance;
+import jalview.ws.params.WsParamSetI;
+
+/**
+ * @author jimp
+ *
+ */
+public class SequenceAnnotationWSClient extends Jws2Client
+{
+
+ /**
+ * initialise a client so its attachWSMenuEntry method can be called.
+ */
+ public SequenceAnnotationWSClient()
+ {
+ // TODO Auto-generated constructor stub
+ }
+
+ public SequenceAnnotationWSClient(final Jws2Instance sh,
+ AlignFrame alignFrame, WsParamSetI preset, boolean editParams)
+ {
+ super(alignFrame, preset, null);
+ List<AlignCalcWorkerI> clnts = alignFrame.getViewport()
+ .getCalcManager()
+ .getRegisteredWorkersOfClass(AAConsClient.class);
+ if (clnts == null || clnts.size() == 0)
+ {
+ if (!processParams(sh, editParams))
+ {
+ return;
+ }
+ alignFrame
+ .getViewport()
+ .getCalcManager()
+ .registerWorker(
+ new AAConsClient(sh, alignFrame, preset, paramset));
+ }
+ else
+ {
+ AAConsClient worker = (AAConsClient) clnts.get(0);
+ if (editParams)
+ {
+ paramset = worker.getArguments();
+ preset = worker.getPreset();
+ }
+
+ if (!processParams(sh, editParams, true))
+ return;
+ // reinstate worker if it was blacklisted (might have happened due to invalid parameters)
+ alignFrame.getViewport().getCalcManager().workerMayRun(worker);
+ worker.updateParameters(preset, paramset);
+
+ }
+ }
+
+ /*
+ * (non-Javadoc)
+ *
+ * @see jalview.ws.jws2.Jws2Client#attachWSMenuEntry(javax.swing.JMenu,
+ * jalview.ws.jws2.jabaws2.Jws2Instance, jalview.gui.AlignFrame)
+ */
+ public void attachWSMenuEntry(JMenu wsmenu, final Jws2Instance service,
+ final AlignFrame alignFrame)
+ {
+ if (service.serviceType.toLowerCase().contains("aaconws"))
+ {
+ boolean hasparams = service.hasParameters();
+ String calcName = "AACons";
+ System.out.println("Making an aacons client!");
+ JMenuItem aacons = new JMenuItem("AACons Defaults");
+ aacons.addActionListener(new ActionListener()
+ {
+
+ @Override
+ public void actionPerformed(ActionEvent e)
+ {
+ new SequenceAnnotationWSClient(service, alignFrame, null, false);
+ }
+ });
+ wsmenu.add(aacons);
+ if (hasparams)
+ {
+ // only add these menu options if the service has user-modifiable
+ // arguments
+ aacons = new JMenuItem("Edit settings and run ...");
+ aacons.setToolTipText("View and change the parameters before alignment.");
+
+ aacons.addActionListener(new ActionListener()
+ {
+ public void actionPerformed(ActionEvent e)
+ {
+ new SequenceAnnotationWSClient(service, alignFrame, null, true);
+ }
+ });
+ wsmenu.add(aacons);
+ List<WsParamSetI> presets = service.getParamStore().getPresets();
+ if (presets != null && presets.size() > 0)
+ {
+ JMenu presetlist = new JMenu("Run " + calcName + "with preset");
+
+ for (final WsParamSetI preset : presets)
+ {
+ final JMenuItem methodR = new JMenuItem(preset.getName());
+ methodR.setToolTipText("<html><p>"
+ + JvSwingUtils.wrapTooltip("<strong>"
+ + (preset.isModifiable() ? "User Preset"
+ : "Service Preset") + "</strong><br/>"
+ + preset.getDescription() + "</p>") + "</html>");
+ methodR.addActionListener(new ActionListener()
+ {
+ public void actionPerformed(ActionEvent e)
+ {
+ new SequenceAnnotationWSClient(service, alignFrame, preset,
+ false);
+ }
+
+ });
+ presetlist.add(methodR);
+ }
+ wsmenu.add(presetlist);
+ }
+ }
+
+ }
+ }
+}
git://source.jalview.org / jalview.git / commitdiff