Sets sequence features

diff --git a/src/jalview/gui/Jalview2XML.java b/src/jalview/gui/Jalview2XML.java
index bfd97f0..b8977c5 100755 (executable)
--- a/src/jalview/gui/Jalview2XML.java
+++ b/src/jalview/gui/Jalview2XML.java
@@ -682,16 +682,12 @@ public class Jalview2XML
     af.changeColour(af.viewport.getGlobalColourScheme());\r
     af.viewport.setColourAppliesToAllGroups(true);\r
 \r
-    System.out.println(view.getShowSequenceFeatures());\r
-\r
     if (view.getShowSequenceFeatures())\r
     {\r
-      ;\r
-    }\r
-\r
-    {\r
+      af.viewport.showSequenceFeatures = true;\r
       SequenceFeatureFetcher sft = new SequenceFeatureFetcher(al,\r
           af.alignPanel);\r
+       al.featuresAdded = true;\r
     }\r
 \r
     //LOAD TREES - THIS RELEASE ONLY ALLOWS 1 TREE\r