Save seqset properties

diff --git a/src/jalview/gui/Jalview2XML.java b/src/jalview/gui/Jalview2XML.java
index 45c76ee..49b022c 100755 (executable)
--- a/src/jalview/gui/Jalview2XML.java
+++ b/src/jalview/gui/Jalview2XML.java
@@ -209,6 +209,19 @@ public class Jalview2XML
 
     vamsasSet.setGapChar(jal.getGapCharacter() + "");
 
+    if(jal.getProperties()!=null)
+    {
+      Enumeration en = jal.getProperties().keys();
+      while(en.hasMoreElements())
+      {
+        String key = en.nextElement().toString();
+        SequenceSetProperties ssp = new SequenceSetProperties();
+        ssp.setKey(key);
+        ssp.setValue(jal.getProperties().get(key).toString());
+        vamsasSet.addSequenceSetProperties(ssp);
+      }
+    }
+
     JSeq jseq;
 
     //SAVE SEQUENCES
@@ -1207,6 +1220,13 @@ public class Jalview2XML
     jalview.datamodel.Alignment al =
         new jalview.datamodel.Alignment(orderedSeqs);
 
+    for(int i=0; i<vamsasSet.getSequenceSetPropertiesCount(); i++ )
+    {
+      SequenceSetProperties ssp = vamsasSet.getSequenceSetProperties(i);
+      al.setProperty(ssp.getKey(), ssp.getValue());
+    }
+
+
     al.setDataset(null);
     /////////////////////////////////
 

diff --git a/src/jalview/schemabinding/version2/SequenceSet.java b/src/jalview/schemabinding/version2/SequenceSet.java
index 6f0342b..91b0057 100755 (executable)
--- a/src/jalview/schemabinding/version2/SequenceSet.java
+++ b/src/jalview/schemabinding/version2/SequenceSet.java
@@ -50,6 +50,11 @@ public class SequenceSet implements java.io.Serializable {
      */\r
     private java.util.Vector _annotationList;\r
 \r
+    /**\r
+     * Field _sequenceSetPropertiesList\r
+     */\r
+    private java.util.Vector _sequenceSetPropertiesList;\r
+\r
 \r
       //----------------/\r
      //- Constructors -/\r
@@ -59,6 +64,7 @@ public class SequenceSet implements java.io.Serializable {
         super();\r
         _sequenceList = new Vector();\r
         _annotationList = new Vector();\r
+        _sequenceSetPropertiesList = new Vector();\r
     } //-- jalview.schemabinding.version2.SequenceSet()\r
 \r
 \r
@@ -121,6 +127,33 @@ public class SequenceSet implements java.io.Serializable {
     } //-- void addSequence(int, jalview.schemabinding.version2.Sequence) \r
 \r
     /**\r
+     * Method addSequenceSetProperties\r
+     * \r
+     * \r
+     * \r
+     * @param vSequenceSetProperties\r
+     */\r
+    public void addSequenceSetProperties(jalview.schemabinding.version2.SequenceSetProperties vSequenceSetProperties)\r
+        throws java.lang.IndexOutOfBoundsException\r
+    {\r
+        _sequenceSetPropertiesList.addElement(vSequenceSetProperties);\r
+    } //-- void addSequenceSetProperties(jalview.schemabinding.version2.SequenceSetProperties) \r
+\r
+    /**\r
+     * Method addSequenceSetProperties\r
+     * \r
+     * \r
+     * \r
+     * @param index\r
+     * @param vSequenceSetProperties\r
+     */\r
+    public void addSequenceSetProperties(int index, jalview.schemabinding.version2.SequenceSetProperties vSequenceSetProperties)\r
+        throws java.lang.IndexOutOfBoundsException\r
+    {\r
+        _sequenceSetPropertiesList.insertElementAt(vSequenceSetProperties, index);\r
+    } //-- void addSequenceSetProperties(int, jalview.schemabinding.version2.SequenceSetProperties) \r
+\r
+    /**\r
      * Method enumerateAnnotation\r
      * \r
      * \r
@@ -145,6 +178,18 @@ public class SequenceSet implements java.io.Serializable {
     } //-- java.util.Enumeration enumerateSequence() \r
 \r
     /**\r
+     * Method enumerateSequenceSetProperties\r
+     * \r
+     * \r
+     * \r
+     * @return Enumeration\r
+     */\r
+    public java.util.Enumeration enumerateSequenceSetProperties()\r
+    {\r
+        return _sequenceSetPropertiesList.elements();\r
+    } //-- java.util.Enumeration enumerateSequenceSetProperties() \r
+\r
+    /**\r
      * Method getAnnotation\r
      * \r
      * \r
@@ -252,6 +297,54 @@ public class SequenceSet implements java.io.Serializable {
     } //-- int getSequenceCount() \r
 \r
     /**\r
+     * Method getSequenceSetProperties\r
+     * \r
+     * \r
+     * \r
+     * @param index\r
+     * @return SequenceSetProperties\r
+     */\r
+    public jalview.schemabinding.version2.SequenceSetProperties getSequenceSetProperties(int index)\r
+        throws java.lang.IndexOutOfBoundsException\r
+    {\r
+        //-- check bounds for index\r
+        if ((index < 0) || (index > _sequenceSetPropertiesList.size())) {\r
+            throw new IndexOutOfBoundsException();\r
+        }\r
+        \r
+        return (jalview.schemabinding.version2.SequenceSetProperties) _sequenceSetPropertiesList.elementAt(index);\r
+    } //-- jalview.schemabinding.version2.SequenceSetProperties getSequenceSetProperties(int) \r
+\r
+    /**\r
+     * Method getSequenceSetProperties\r
+     * \r
+     * \r
+     * \r
+     * @return SequenceSetProperties\r
+     */\r
+    public jalview.schemabinding.version2.SequenceSetProperties[] getSequenceSetProperties()\r
+    {\r
+        int size = _sequenceSetPropertiesList.size();\r
+        jalview.schemabinding.version2.SequenceSetProperties[] mArray = new jalview.schemabinding.version2.SequenceSetProperties[size];\r
+        for (int index = 0; index < size; index++) {\r
+            mArray[index] = (jalview.schemabinding.version2.SequenceSetProperties) _sequenceSetPropertiesList.elementAt(index);\r
+        }\r
+        return mArray;\r
+    } //-- jalview.schemabinding.version2.SequenceSetProperties[] getSequenceSetProperties() \r
+\r
+    /**\r
+     * Method getSequenceSetPropertiesCount\r
+     * \r
+     * \r
+     * \r
+     * @return int\r
+     */\r
+    public int getSequenceSetPropertiesCount()\r
+    {\r
+        return _sequenceSetPropertiesList.size();\r
+    } //-- int getSequenceSetPropertiesCount() \r
+\r
+    /**\r
      * Method isValid\r
      * \r
      * \r
@@ -316,6 +409,15 @@ public class SequenceSet implements java.io.Serializable {
     } //-- void removeAllSequence() \r
 \r
     /**\r
+     * Method removeAllSequenceSetProperties\r
+     * \r
+     */\r
+    public void removeAllSequenceSetProperties()\r
+    {\r
+        _sequenceSetPropertiesList.removeAllElements();\r
+    } //-- void removeAllSequenceSetProperties() \r
+\r
+    /**\r
      * Method removeAnnotation\r
      * \r
      * \r
@@ -346,6 +448,21 @@ public class SequenceSet implements java.io.Serializable {
     } //-- jalview.schemabinding.version2.Sequence removeSequence(int) \r
 \r
     /**\r
+     * Method removeSequenceSetProperties\r
+     * \r
+     * \r
+     * \r
+     * @param index\r
+     * @return SequenceSetProperties\r
+     */\r
+    public jalview.schemabinding.version2.SequenceSetProperties removeSequenceSetProperties(int index)\r
+    {\r
+        java.lang.Object obj = _sequenceSetPropertiesList.elementAt(index);\r
+        _sequenceSetPropertiesList.removeElementAt(index);\r
+        return (jalview.schemabinding.version2.SequenceSetProperties) obj;\r
+    } //-- jalview.schemabinding.version2.SequenceSetProperties removeSequenceSetProperties(int) \r
+\r
+    /**\r
      * Method setAnnotation\r
      * \r
      * \r
@@ -424,6 +541,40 @@ public class SequenceSet implements java.io.Serializable {
     } //-- void setSequence(jalview.schemabinding.version2.Sequence) \r
 \r
     /**\r
+     * Method setSequenceSetProperties\r
+     * \r
+     * \r
+     * \r
+     * @param index\r
+     * @param vSequenceSetProperties\r
+     */\r
+    public void setSequenceSetProperties(int index, jalview.schemabinding.version2.SequenceSetProperties vSequenceSetProperties)\r
+        throws java.lang.IndexOutOfBoundsException\r
+    {\r
+        //-- check bounds for index\r
+        if ((index < 0) || (index > _sequenceSetPropertiesList.size())) {\r
+            throw new IndexOutOfBoundsException();\r
+        }\r
+        _sequenceSetPropertiesList.setElementAt(vSequenceSetProperties, index);\r
+    } //-- void setSequenceSetProperties(int, jalview.schemabinding.version2.SequenceSetProperties) \r
+\r
+    /**\r
+     * Method setSequenceSetProperties\r
+     * \r
+     * \r
+     * \r
+     * @param sequenceSetPropertiesArray\r
+     */\r
+    public void setSequenceSetProperties(jalview.schemabinding.version2.SequenceSetProperties[] sequenceSetPropertiesArray)\r
+    {\r
+        //-- copy array\r
+        _sequenceSetPropertiesList.removeAllElements();\r
+        for (int i = 0; i < sequenceSetPropertiesArray.length; i++) {\r
+            _sequenceSetPropertiesList.addElement(sequenceSetPropertiesArray[i]);\r
+        }\r
+    } //-- void setSequenceSetProperties(jalview.schemabinding.version2.SequenceSetProperties) \r
+\r
+    /**\r
      * Method unmarshal\r
      * \r
      * \r

diff --git a/src/jalview/schemabinding/version2/SequenceSetDescriptor.java b/src/jalview/schemabinding/version2/SequenceSetDescriptor.java
index 70ad2dc..22e00c3 100755 (executable)
--- a/src/jalview/schemabinding/version2/SequenceSetDescriptor.java
+++ b/src/jalview/schemabinding/version2/SequenceSetDescriptor.java
@@ -175,6 +175,41 @@ public class SequenceSetDescriptor extends org.exolab.castor.xml.util.XMLClassDe
         { //-- local scope\r
         }\r
         desc.setValidator(fieldValidator);\r
+        //-- _sequenceSetPropertiesList\r
+        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(jalview.schemabinding.version2.SequenceSetProperties.class, "_sequenceSetPropertiesList", "sequenceSetProperties", org.exolab.castor.xml.NodeType.Element);\r
+        handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
+            public java.lang.Object getValue( java.lang.Object object ) \r
+                throws IllegalStateException\r
+            {\r
+                SequenceSet target = (SequenceSet) object;\r
+                return target.getSequenceSetProperties();\r
+            }\r
+            public void setValue( java.lang.Object object, java.lang.Object value) \r
+                throws IllegalStateException, IllegalArgumentException\r
+            {\r
+                try {\r
+                    SequenceSet target = (SequenceSet) object;\r
+                    target.addSequenceSetProperties( (jalview.schemabinding.version2.SequenceSetProperties) value);\r
+                }\r
+                catch (java.lang.Exception ex) {\r
+                    throw new IllegalStateException(ex.toString());\r
+                }\r
+            }\r
+            public java.lang.Object newInstance( java.lang.Object parent ) {\r
+                return new jalview.schemabinding.version2.SequenceSetProperties();\r
+            }\r
+        } );\r
+        desc.setHandler(handler);\r
+        desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");\r
+        desc.setMultivalued(true);\r
+        addFieldDescriptor(desc);\r
+        \r
+        //-- validation code for: _sequenceSetPropertiesList\r
+        fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
+        fieldValidator.setMinOccurs(0);\r
+        { //-- local scope\r
+        }\r
+        desc.setValidator(fieldValidator);\r
     } //-- jalview.schemabinding.version2.SequenceSetDescriptor()\r
 \r
 \r

diff --git a/src/jalview/schemabinding/version2/SequenceSetProperties.java b/src/jalview/schemabinding/version2/SequenceSetProperties.java
new file mode 100644 (file)
index 0000000..8fd310f
--- /dev/null
+++ b/src/jalview/schemabinding/version2/SequenceSetProperties.java
@@ -0,0 +1,173 @@
+/*\r
+ * This class was automatically generated with \r
+ * <a href="http://www.castor.org">Castor 0.9.6</a>, using an XML\r
+ * Schema.\r
+ * $Id$\r
+ */\r
+\r
+package jalview.schemabinding.version2;\r
+\r
+  //---------------------------------/\r
+ //- Imported classes and packages -/\r
+//---------------------------------/\r
+\r
+import java.io.IOException;\r
+import java.io.Reader;\r
+import java.io.Serializable;\r
+import java.io.Writer;\r
+import org.exolab.castor.xml.MarshalException;\r
+import org.exolab.castor.xml.Marshaller;\r
+import org.exolab.castor.xml.Unmarshaller;\r
+import org.exolab.castor.xml.ValidationException;\r
+import org.xml.sax.ContentHandler;\r
+\r
+/**\r
+ * Class SequenceSetProperties.\r
+ * \r
+ * @version $Revision$ $Date$\r
+ */\r
+public class SequenceSetProperties implements java.io.Serializable {\r
+\r
+\r
+      //--------------------------/\r
+     //- Class/Member Variables -/\r
+    //--------------------------/\r
+\r
+    /**\r
+     * Field _key\r
+     */\r
+    private java.lang.String _key;\r
+\r
+    /**\r
+     * Field _value\r
+     */\r
+    private java.lang.String _value;\r
+\r
+\r
+      //----------------/\r
+     //- Constructors -/\r
+    //----------------/\r
+\r
+    public SequenceSetProperties() {\r
+        super();\r
+    } //-- jalview.schemabinding.version2.SequenceSetProperties()\r
+\r
+\r
+      //-----------/\r
+     //- Methods -/\r
+    //-----------/\r
+\r
+    /**\r
+     * Returns the value of field 'key'.\r
+     * \r
+     * @return String\r
+     * @return the value of field 'key'.\r
+     */\r
+    public java.lang.String getKey()\r
+    {\r
+        return this._key;\r
+    } //-- java.lang.String getKey() \r
+\r
+    /**\r
+     * Returns the value of field 'value'.\r
+     * \r
+     * @return String\r
+     * @return the value of field 'value'.\r
+     */\r
+    public java.lang.String getValue()\r
+    {\r
+        return this._value;\r
+    } //-- java.lang.String getValue() \r
+\r
+    /**\r
+     * Method isValid\r
+     * \r
+     * \r
+     * \r
+     * @return boolean\r
+     */\r
+    public boolean isValid()\r
+    {\r
+        try {\r
+            validate();\r
+        }\r
+        catch (org.exolab.castor.xml.ValidationException vex) {\r
+            return false;\r
+        }\r
+        return true;\r
+    } //-- boolean isValid() \r
+\r
+    /**\r
+     * Method marshal\r
+     * \r
+     * \r
+     * \r
+     * @param out\r
+     */\r
+    public void marshal(java.io.Writer out)\r
+        throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException\r
+    {\r
+        \r
+        Marshaller.marshal(this, out);\r
+    } //-- void marshal(java.io.Writer) \r
+\r
+    /**\r
+     * Method marshal\r
+     * \r
+     * \r
+     * \r
+     * @param handler\r
+     */\r
+    public void marshal(org.xml.sax.ContentHandler handler)\r
+        throws java.io.IOException, org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException\r
+    {\r
+        \r
+        Marshaller.marshal(this, handler);\r
+    } //-- void marshal(org.xml.sax.ContentHandler) \r
+\r
+    /**\r
+     * Sets the value of field 'key'.\r
+     * \r
+     * @param key the value of field 'key'.\r
+     */\r
+    public void setKey(java.lang.String key)\r
+    {\r
+        this._key = key;\r
+    } //-- void setKey(java.lang.String) \r
+\r
+    /**\r
+     * Sets the value of field 'value'.\r
+     * \r
+     * @param value the value of field 'value'.\r
+     */\r
+    public void setValue(java.lang.String value)\r
+    {\r
+        this._value = value;\r
+    } //-- void setValue(java.lang.String) \r
+\r
+    /**\r
+     * Method unmarshal\r
+     * \r
+     * \r
+     * \r
+     * @param reader\r
+     * @return Object\r
+     */\r
+    public static java.lang.Object unmarshal(java.io.Reader reader)\r
+        throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException\r
+    {\r
+        return (jalview.schemabinding.version2.SequenceSetProperties) Unmarshaller.unmarshal(jalview.schemabinding.version2.SequenceSetProperties.class, reader);\r
+    } //-- java.lang.Object unmarshal(java.io.Reader) \r
+\r
+    /**\r
+     * Method validate\r
+     * \r
+     */\r
+    public void validate()\r
+        throws org.exolab.castor.xml.ValidationException\r
+    {\r
+        org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();\r
+        validator.validate(this);\r
+    } //-- void validate() \r
+\r
+}\r

diff --git a/src/jalview/schemabinding/version2/SequenceSetPropertiesDescriptor.java b/src/jalview/schemabinding/version2/SequenceSetPropertiesDescriptor.java
new file mode 100644 (file)
index 0000000..7d45070
--- /dev/null
+++ b/src/jalview/schemabinding/version2/SequenceSetPropertiesDescriptor.java
@@ -0,0 +1,242 @@
+/*\r
+ * This class was automatically generated with \r
+ * <a href="http://www.castor.org">Castor 0.9.6</a>, using an XML\r
+ * Schema.\r
+ * $Id$\r
+ */\r
+\r
+package jalview.schemabinding.version2;\r
+\r
+  //---------------------------------/\r
+ //- Imported classes and packages -/\r
+//---------------------------------/\r
+\r
+import org.exolab.castor.mapping.AccessMode;\r
+import org.exolab.castor.xml.TypeValidator;\r
+import org.exolab.castor.xml.XMLFieldDescriptor;\r
+import org.exolab.castor.xml.validators.*;\r
+\r
+/**\r
+ * Class SequenceSetPropertiesDescriptor.\r
+ * \r
+ * @version $Revision$ $Date$\r
+ */\r
+public class SequenceSetPropertiesDescriptor extends org.exolab.castor.xml.util.XMLClassDescriptorImpl {\r
+\r
+\r
+      //--------------------------/\r
+     //- Class/Member Variables -/\r
+    //--------------------------/\r
+\r
+    /**\r
+     * Field nsPrefix\r
+     */\r
+    private java.lang.String nsPrefix;\r
+\r
+    /**\r
+     * Field nsURI\r
+     */\r
+    private java.lang.String nsURI;\r
+\r
+    /**\r
+     * Field xmlName\r
+     */\r
+    private java.lang.String xmlName;\r
+\r
+    /**\r
+     * Field identity\r
+     */\r
+    private org.exolab.castor.xml.XMLFieldDescriptor identity;\r
+\r
+\r
+      //----------------/\r
+     //- Constructors -/\r
+    //----------------/\r
+\r
+    public SequenceSetPropertiesDescriptor() {\r
+        super();\r
+        nsURI = "www.vamsas.ac.uk/jalview/version2";\r
+        xmlName = "sequenceSetProperties";\r
+        org.exolab.castor.xml.util.XMLFieldDescriptorImpl  desc           = null;\r
+        org.exolab.castor.xml.XMLFieldHandler              handler        = null;\r
+        org.exolab.castor.xml.FieldValidator               fieldValidator = null;\r
+        //-- initialize attribute descriptors\r
+        \r
+        //-- _key\r
+        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_key", "key", org.exolab.castor.xml.NodeType.Attribute);\r
+        desc.setImmutable(true);\r
+        handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
+            public java.lang.Object getValue( java.lang.Object object ) \r
+                throws IllegalStateException\r
+            {\r
+                SequenceSetProperties target = (SequenceSetProperties) object;\r
+                return target.getKey();\r
+            }\r
+            public void setValue( java.lang.Object object, java.lang.Object value) \r
+                throws IllegalStateException, IllegalArgumentException\r
+            {\r
+                try {\r
+                    SequenceSetProperties target = (SequenceSetProperties) object;\r
+                    target.setKey( (java.lang.String) value);\r
+                }\r
+                catch (java.lang.Exception ex) {\r
+                    throw new IllegalStateException(ex.toString());\r
+                }\r
+            }\r
+            public java.lang.Object newInstance( java.lang.Object parent ) {\r
+                return null;\r
+            }\r
+        } );\r
+        desc.setHandler(handler);\r
+        addFieldDescriptor(desc);\r
+        \r
+        //-- validation code for: _key\r
+        fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
+        { //-- local scope\r
+            StringValidator typeValidator = new StringValidator();\r
+            typeValidator.setWhiteSpace("preserve");\r
+            fieldValidator.setValidator(typeValidator);\r
+        }\r
+        desc.setValidator(fieldValidator);\r
+        //-- _value\r
+        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_value", "value", org.exolab.castor.xml.NodeType.Attribute);\r
+        desc.setImmutable(true);\r
+        handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
+            public java.lang.Object getValue( java.lang.Object object ) \r
+                throws IllegalStateException\r
+            {\r
+                SequenceSetProperties target = (SequenceSetProperties) object;\r
+                return target.getValue();\r
+            }\r
+            public void setValue( java.lang.Object object, java.lang.Object value) \r
+                throws IllegalStateException, IllegalArgumentException\r
+            {\r
+                try {\r
+                    SequenceSetProperties target = (SequenceSetProperties) object;\r
+                    target.setValue( (java.lang.String) value);\r
+                }\r
+                catch (java.lang.Exception ex) {\r
+                    throw new IllegalStateException(ex.toString());\r
+                }\r
+            }\r
+            public java.lang.Object newInstance( java.lang.Object parent ) {\r
+                return null;\r
+            }\r
+        } );\r
+        desc.setHandler(handler);\r
+        addFieldDescriptor(desc);\r
+        \r
+        //-- validation code for: _value\r
+        fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
+        { //-- local scope\r
+            StringValidator typeValidator = new StringValidator();\r
+            typeValidator.setWhiteSpace("preserve");\r
+            fieldValidator.setValidator(typeValidator);\r
+        }\r
+        desc.setValidator(fieldValidator);\r
+        //-- initialize element descriptors\r
+        \r
+    } //-- jalview.schemabinding.version2.SequenceSetPropertiesDescriptor()\r
+\r
+\r
+      //-----------/\r
+     //- Methods -/\r
+    //-----------/\r
+\r
+    /**\r
+     * Method getAccessMode\r
+     * \r
+     * \r
+     * \r
+     * @return AccessMode\r
+     */\r
+    public org.exolab.castor.mapping.AccessMode getAccessMode()\r
+    {\r
+        return null;\r
+    } //-- org.exolab.castor.mapping.AccessMode getAccessMode() \r
+\r
+    /**\r
+     * Method getExtends\r
+     * \r
+     * \r
+     * \r
+     * @return ClassDescriptor\r
+     */\r
+    public org.exolab.castor.mapping.ClassDescriptor getExtends()\r
+    {\r
+        return null;\r
+    } //-- org.exolab.castor.mapping.ClassDescriptor getExtends() \r
+\r
+    /**\r
+     * Method getIdentity\r
+     * \r
+     * \r
+     * \r
+     * @return FieldDescriptor\r
+     */\r
+    public org.exolab.castor.mapping.FieldDescriptor getIdentity()\r
+    {\r
+        return identity;\r
+    } //-- org.exolab.castor.mapping.FieldDescriptor getIdentity() \r
+\r
+    /**\r
+     * Method getJavaClass\r
+     * \r
+     * \r
+     * \r
+     * @return Class\r
+     */\r
+    public java.lang.Class getJavaClass()\r
+    {\r
+        return jalview.schemabinding.version2.SequenceSetProperties.class;\r
+    } //-- java.lang.Class getJavaClass() \r
+\r
+    /**\r
+     * Method getNameSpacePrefix\r
+     * \r
+     * \r
+     * \r
+     * @return String\r
+     */\r
+    public java.lang.String getNameSpacePrefix()\r
+    {\r
+        return nsPrefix;\r
+    } //-- java.lang.String getNameSpacePrefix() \r
+\r
+    /**\r
+     * Method getNameSpaceURI\r
+     * \r
+     * \r
+     * \r
+     * @return String\r
+     */\r
+    public java.lang.String getNameSpaceURI()\r
+    {\r
+        return nsURI;\r
+    } //-- java.lang.String getNameSpaceURI() \r
+\r
+    /**\r
+     * Method getValidator\r
+     * \r
+     * \r
+     * \r
+     * @return TypeValidator\r
+     */\r
+    public org.exolab.castor.xml.TypeValidator getValidator()\r
+    {\r
+        return this;\r
+    } //-- org.exolab.castor.xml.TypeValidator getValidator() \r
+\r
+    /**\r
+     * Method getXMLName\r
+     * \r
+     * \r
+     * \r
+     * @return String\r
+     */\r
+    public java.lang.String getXMLName()\r
+    {\r
+        return xmlName;\r
+    } //-- java.lang.String getXMLName() \r
+\r
+}\r