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seqs[j] replaces current
author
amwaterhouse
<Andrew Waterhouse>
Wed, 26 Jul 2006 12:31:23 +0000
(12:31 +0000)
committer
amwaterhouse
<Andrew Waterhouse>
Wed, 26 Jul 2006 12:31:23 +0000
(12:31 +0000)
src/jalview/datamodel/Alignment.java
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diff --git
a/src/jalview/datamodel/Alignment.java
b/src/jalview/datamodel/Alignment.java
index
c0c4ae0
..
90347ca
100755
(executable)
--- a/
src/jalview/datamodel/Alignment.java
+++ b/
src/jalview/datamodel/Alignment.java
@@
-159,7
+159,6
@@
public class Alignment implements AlignmentI
SequenceI[] seqs = getVisibleAndRepresentedSeqs();
\r
int j, jSize = seqs.length;
\r
\r
- SequenceI current;
\r
int width = 0;
\r
for (int i = 0; i < jSize; i++)
\r
{
\r
@@
-177,11
+176,9
@@
public class Alignment implements AlignmentI
\r
for (j = 0; j < jSize; j++)
\r
{
\r
- current = getSequenceAt(j);
\r
-
\r
- if (current.getLength() > i)
\r
+ if (seqs[j].getLength() > i)
\r
{
\r
- if (!jalview.util.Comparison.isGap(current.getCharAt(i)))
\r
+ if (!jalview.util.Comparison.isGap(seqs[j].getCharAt(i)))
\r
{
\r
if(delete)
\r
endCol = i;
\r