seqs[j] replaces current
authoramwaterhouse <Andrew Waterhouse>
Wed, 26 Jul 2006 12:31:23 +0000 (12:31 +0000)
committeramwaterhouse <Andrew Waterhouse>
Wed, 26 Jul 2006 12:31:23 +0000 (12:31 +0000)
src/jalview/datamodel/Alignment.java

index c0c4ae0..90347ca 100755 (executable)
@@ -159,7 +159,6 @@ public class Alignment implements AlignmentI
         SequenceI[] seqs = getVisibleAndRepresentedSeqs();\r
         int j, jSize = seqs.length;\r
 \r
-        SequenceI current;\r
         int width = 0;\r
         for (int i = 0; i < jSize; i++)\r
         {\r
@@ -177,11 +176,9 @@ public class Alignment implements AlignmentI
 \r
             for (j = 0; j < jSize; j++)\r
             {\r
-                current = getSequenceAt(j);\r
-\r
-                if (current.getLength() > i)\r
+                if (seqs[j].getLength() > i)\r
                 {\r
-                    if (!jalview.util.Comparison.isGap(current.getCharAt(i)))\r
+                    if (!jalview.util.Comparison.isGap(seqs[j].getCharAt(i)))\r
                     {\r
                         if(delete)\r
                           endCol = i;\r