reload, just close this frame and open a new one

diff --git a/src/jalview/gui/AlignFrame.java b/src/jalview/gui/AlignFrame.java
index 3f26ca8..08c1aa9 100755 (executable)
--- a/src/jalview/gui/AlignFrame.java
+++ b/src/jalview/gui/AlignFrame.java
@@ -578,30 +578,17 @@ public class AlignFrame extends GAlignFrame implements DropTargetListener
       }
       else
       {
-        viewport.alignment.deleteAllGroups();
-        viewport.sequenceColours=null;
-        while (viewport.alignment.getHeight() > 0)
-        {
-          viewport.alignment.deleteSequence(0);
-        }
+        Rectangle bounds = this.getBounds();
 
-        viewport.historyList.clear();
-        viewport.redoList.clear();
-        Alignment dset = viewport.alignment.getDataset();
-        while (dset.getHeight() > 0)
-        {
-          dset.deleteSequence(0);
-        }
+        FileLoader loader = new FileLoader();
+        String protocol = fileName.startsWith("http:") ? "URL" : "File";
+        AlignFrame newframe =
+            loader.LoadFileWaitTillLoaded(fileName, protocol, currentFileFormat);
 
-        firePropertyChange("Alignment", null, viewport.alignment.getSequences());
+        newframe.setBounds(bounds);
 
-        updateEditMenuBar();
+        this.closeMenuItem_actionPerformed(true);
       }
-
-      FileLoader loader = new FileLoader();
-      String protocol = fileName.startsWith("http:")? "URL":"File";
-      loader.LoadFile(viewport, fileName, protocol, currentFileFormat);
-
     }
   }