javadoc

diff --git a/src/jalview/datamodel/AlignmentOrder.java b/src/jalview/datamodel/AlignmentOrder.java
index 9a2ed8c..7127b52 100755 (executable)
--- a/src/jalview/datamodel/AlignmentOrder.java
+++ b/src/jalview/datamodel/AlignmentOrder.java
@@ -171,7 +171,7 @@ public class AlignmentOrder
      * replaces oldref with newref in the alignment order.\r
      * @param oldref\r
      * @param newref\r
-     * @return\r
+     * @return true if oldref was contained in order and replaced with newref\r
      */\r
     public boolean updateSequence(SequenceI oldref, SequenceI newref) {\r
       int found=Order.indexOf(oldref);\r